Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:41:23 (3089605): wrapper (7.7.26015): starting
20:41:23 (3089605): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 20:41:24] Arguments: --nthreads 12
[2026-01-16 20:41:24] Threads: 12
[2026-01-16 20:41:24] Checking for CVMFS
[2026-01-16 20:41:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 20:41:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 20:41:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 20:41:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 20:41:26] 2.13.3.0 40677 10969 66456 155219 0 236 4082982 4096000 18696 130560 0 92529659 99.983 1169876 227 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 20:41:26] CVMFS is ok
[2026-01-16 20:41:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 20:41:26] Checking for apptainer binary...
[2026-01-16 20:41:26] apptainer is not installed, using version from CVMFS
[2026-01-16 20:41:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 20:41:28] epyc7v12
[2026-01-16 20:41:28] apptainer works
[2026-01-16 20:41:28] Set ATHENA_PROC_NUMBER=12
[2026-01-16 20:41:28] Set ATHENA_CORE_NUMBER=12
[2026-01-16 20:41:28] Starting ATLAS job with PandaID=6961933929
[2026-01-16 20:41:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31426/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 23:53:25]  *** The last 200 lines of the pilot log: ***
[2026-01-16 23:53:25] 2026-01-16 23:52:41,360 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2416.8626249999998
[2026-01-16 23:53:25] 2026-01-16 23:52:41,415 | INFO     | using path: /opt/boinc/instance_homes/boinc_31426/slots/0/PanDA_Pilot-6961933929/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,415 | INFO     | extracted standard info from prmon json
[2026-01-16 23:53:25] 2026-01-16 23:52:41,415 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 23:53:25] 2026-01-16 23:52:41,416 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 23:53:25] 2026-01-16 23:52:41,418 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 23:53:25] 2026-01-16 23:52:41,418 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 23:53:25] 2026-01-16 23:52:41,425 | INFO     | fitting pss+swap vs Time
[2026-01-16 23:53:25] 2026-01-16 23:52:41,425 | INFO     | sum of square deviations: 1995284232.365595
[2026-01-16 23:53:25] 2026-01-16 23:52:41,426 | INFO     | sum of deviations: 45741901238.053734
[2026-01-16 23:53:25] 2026-01-16 23:52:41,427 | INFO     | mean x: 1768601838.5268817
[2026-01-16 23:53:25] 2026-01-16 23:52:41,427 | INFO     | mean y: 2602034.989247312
[2026-01-16 23:53:25] 2026-01-16 23:52:41,427 | INFO     | intersect: -40542604164.24149
[2026-01-16 23:53:25] 2026-01-16 23:52:41,427 | INFO     | chi2: 2.913928159865761
[2026-01-16 23:53:25] 2026-01-16 23:52:41,427 | INFO     | sum of square deviations: 1838659564.861876
[2026-01-16 23:53:25] 2026-01-16 23:52:41,429 | INFO     | sum of deviations: 58101195290.29278
[2026-01-16 23:53:25] 2026-01-16 23:52:41,429 | INFO     | mean x: 1768601686.0276244
[2026-01-16 23:53:25] 2026-01-16 23:52:41,429 | INFO     | mean y: 2613772.541436464
[2026-01-16 23:53:25] 2026-01-16 23:52:41,429 | INFO     | intersect: -55884769576.94309
[2026-01-16 23:53:25] 2026-01-16 23:52:41,429 | INFO     | chi2: 2.041534572606723
[2026-01-16 23:53:25] 2026-01-16 23:52:41,429 | INFO     | current chi2=2.041534572606723 (change=29.938747264765357 %)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,430 | INFO     | sum of square deviations: 1690453659.8579507
[2026-01-16 23:53:25] 2026-01-16 23:52:41,431 | INFO     | sum of deviations: 56252475913.53408
[2026-01-16 23:53:25] 2026-01-16 23:52:41,431 | INFO     | mean x: 1768601533.528409
[2026-01-16 23:53:25] 2026-01-16 23:52:41,431 | INFO     | mean y: 2611869.6931818184
[2026-01-16 23:53:25] 2026-01-16 23:52:41,431 | INFO     | intersect: -58850356139.97487
[2026-01-16 23:53:25] 2026-01-16 23:52:41,431 | INFO     | chi2: 2.040573056195111
[2026-01-16 23:53:25] 2026-01-16 23:52:41,432 | INFO     | current chi2=2.040573056195111 (change=0.04709772856720225 %)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,432 | INFO     | right removable region: 175
[2026-01-16 23:53:25] 2026-01-16 23:52:41,432 | INFO     | sum of square deviations: 1838656514.861876
[2026-01-16 23:53:25] 2026-01-16 23:52:41,433 | INFO     | sum of deviations: 6450931561.591152
[2026-01-16 23:53:25] 2026-01-16 23:52:41,433 | INFO     | mean x: 1768601991.0276244
[2026-01-16 23:53:25] 2026-01-16 23:52:41,433 | INFO     | mean y: 2640001.281767956
[2026-01-16 23:53:25] 2026-01-16 23:52:41,434 | INFO     | intersect: -6202505066.10464
[2026-01-16 23:53:25] 2026-01-16 23:52:41,434 | INFO     | chi2: 1.095202877124358
[2026-01-16 23:53:25] 2026-01-16 23:52:41,434 | INFO     | current chi2=1.095202877124358 (change=62.41489779299116 %)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,434 | INFO     | sum of square deviations: 1690447559.8579507
[2026-01-16 23:53:25] 2026-01-16 23:52:41,435 | INFO     | sum of deviations: -5883793209.886363
[2026-01-16 23:53:25] 2026-01-16 23:52:41,436 | INFO     | mean x: 1768602143.528409
[2026-01-16 23:53:25] 2026-01-16 23:52:41,436 | INFO     | mean y: 2652686.977272727
[2026-01-16 23:53:25] 2026-01-16 23:52:41,436 | INFO     | intersect: 6158471731.702535
[2026-01-16 23:53:25] 2026-01-16 23:52:41,436 | INFO     | chi2: 0.9594650149438004
[2026-01-16 23:53:25] 2026-01-16 23:52:41,436 | INFO     | current chi2=0.9594650149438004 (change=12.39385551441944 %)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,436 | INFO     | left removable region: 20
[2026-01-16 23:53:25] 2026-01-16 23:52:41,437 | INFO     | sum of square deviations: 1154661074.8387098
[2026-01-16 23:53:25] 2026-01-16 23:52:41,437 | INFO     | sum of deviations: 1813313644.064516
[2026-01-16 23:53:25] 2026-01-16 23:52:41,438 | INFO     | mean x: 1768602113.032258
[2026-01-16 23:53:25] 2026-01-16 23:52:41,438 | INFO     | mean y: 2672077.9870967744
[2026-01-16 23:53:25] 2026-01-16 23:52:41,438 | INFO     | intersect: -2774792593.133565
[2026-01-16 23:53:25] 2026-01-16 23:52:41,438 | INFO     | chi2: 0.0016881108887528762
[2026-01-16 23:53:25] 2026-01-16 23:52:41,438 | INFO     | current memory leak: 1.57 B/s (using 155 data points, chi2=0.00)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,439 | INFO     | could have reported an average CPU frequency of 2423 MHz (10 samples)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,439 | INFO     | ..............................
[2026-01-16 23:53:25] 2026-01-16 23:52:41,439 | INFO     | . Timing measurements:
[2026-01-16 23:53:25] 2026-01-16 23:52:41,439 | INFO     | . get job = 0 s
[2026-01-16 23:53:25] 2026-01-16 23:52:41,439 | INFO     | . initial setup = 3 s
[2026-01-16 23:53:25] 2026-01-16 23:52:41,439 | INFO     | . payload setup = 17 s
[2026-01-16 23:53:25] 2026-01-16 23:52:41,440 | INFO     | . stage-in = 0 s
[2026-01-16 23:53:25] 2026-01-16 23:52:41,440 | INFO     | . payload execution = 11358 s
[2026-01-16 23:53:25] 2026-01-16 23:52:41,440 | INFO     | . stage-out = 2 s
[2026-01-16 23:53:25] 2026-01-16 23:52:41,440 | INFO     | . log creation = 0 s
[2026-01-16 23:53:25] 2026-01-16 23:52:41,440 | INFO     | ..............................
[2026-01-16 23:53:25] 2026-01-16 23:52:41,671 | INFO     | 
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | job summary report
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | --------------------------------------------------
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | PanDA job id: 6961933929
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | task id: 47898826
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | errors: (none)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | pilot state: finished 
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | transexitcode: 0
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | exeerrorcode: 0
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | exeerrordiag: 
[2026-01-16 23:53:25] 2026-01-16 23:52:41,672 | INFO     | exitcode: 0
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | exitmsg: OK
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | cpuconsumptiontime: 65509 s
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | nevents: 400
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | neventsw: 0
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | pid: 3105714
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | pgrp: 3105714
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | corecount: 12
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | event service: False
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | sizes: {0: 2283765, 1: 2283964, 12: 2283964, 15: 2284254, 23: 2284282, 11379: 2313884, 11383: 2322928, 11386: 2322984, 11402: 2323178}
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | --------------------------------------------------
[2026-01-16 23:53:25] 2026-01-16 23:52:41,673 | INFO     | 
[2026-01-16 23:53:25] 2026-01-16 23:52:41,674 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31426/slots/0
[2026-01-16 23:53:25] 2026-01-16 23:52:41,740 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,741 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,741 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,741 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,741 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,741 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,741 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,741 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,741 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,742 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 23:53:25] 2026-01-16 23:52:41,743 | INFO     | job 6961933929 has completed (purged errors)
[2026-01-16 23:53:25] 2026-01-16 23:52:41,743 | INFO     | overall cleanup function is called
[2026-01-16 23:53:25] 2026-01-16 23:52:42,764 | INFO     | --- collectZombieJob: --- 10, [3105714]
[2026-01-16 23:53:25] 2026-01-16 23:52:42,764 | INFO     | zombie collector waiting for pid 3105714
[2026-01-16 23:53:25] 2026-01-16 23:52:42,764 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 23:53:25] 2026-01-16 23:52:42,764 | INFO     | collected zombie processes
[2026-01-16 23:53:25] 2026-01-16 23:52:42,765 | INFO     | will attempt to kill all subprocesses of pid=3105714
[2026-01-16 23:53:25] 2026-01-16 23:52:44,501 | INFO     | process IDs to be killed: [3105714] (in reverse order)
[2026-01-16 23:53:25] 2026-01-16 23:52:45,080 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 23:53:25] 2026-01-16 23:52:45,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 23:53:25] 2026-01-16 23:52:45,148 | INFO     | did not find any defunct processes belonging to 3105714
[2026-01-16 23:53:25] 2026-01-16 23:52:45,203 | INFO     | did not find any defunct processes belonging to 3105714
[2026-01-16 23:53:25] 2026-01-16 23:52:45,209 | INFO     | ready for new job
[2026-01-16 23:53:25] 2026-01-16 23:52:45,209 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 23:53:25] 2026-01-16 23:52:45,214 | INFO     | ***************************************
[2026-01-16 23:53:25] 2026-01-16 23:52:45,214 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 23:53:25] 2026-01-16 23:52:45,214 | INFO     | ***************************************
[2026-01-16 23:53:25] 2026-01-16 23:52:45,214 | INFO     | 
[2026-01-16 23:53:25] 2026-01-16 23:52:45,243 | INFO     | architecture information:
[2026-01-16 23:53:25] 2026-01-16 23:52:45,246 | INFO     | executing command: cat /etc/os-release
[2026-01-16 23:53:25] 2026-01-16 23:52:45,299 | INFO     | cat /etc/os-release:
[2026-01-16 23:53:25] NAME="CentOS Linux"
[2026-01-16 23:53:25] VERSION="7 (Core)"
[2026-01-16 23:53:25] ID="centos"
[2026-01-16 23:53:25] ID_LIKE="rhel fedora"
[2026-01-16 23:53:25] VERSION_ID="7"
[2026-01-16 23:53:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 23:53:25] ANSI_COLOR="0;31"
[2026-01-16 23:53:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 23:53:25] HOME_URL="https://www.centos.org/"
[2026-01-16 23:53:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 23:53:25] 
[2026-01-16 23:53:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 23:53:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 23:53:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 23:53:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 23:53:25] 
[2026-01-16 23:53:25] 2026-01-16 23:52:45,300 | INFO     | ***************************************
[2026-01-16 23:53:25] 2026-01-16 23:52:45,806 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31426/slots/0
[2026-01-16 23:53:25] 2026-01-16 23:52:45,866 | INFO     | sufficient remaining disk space (358584680448 B)
[2026-01-16 23:53:25] 2026-01-16 23:52:45,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 23:53:25] 2026-01-16 23:52:45,867 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 23:53:25] 2026-01-16 23:52:45,867 | INFO     | update_server=False
[2026-01-16 23:53:25] 2026-01-16 23:52:45,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 23:53:25] 2026-01-16 23:52:45,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 23:53:25] 2026-01-16 23:52:45,867 | INFO     | aborting loop
[2026-01-16 23:53:25] 2026-01-16 23:52:45,867 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 23:53:25] 2026-01-16 23:52:45,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 23:53:25] 2026-01-16 23:52:46,335 | INFO     | all payload control threads have been joined
[2026-01-16 23:53:25] 2026-01-16 23:52:46,505 | INFO     | all job control threads have been joined
[2026-01-16 23:53:25] 2026-01-16 23:52:46,562 | INFO     | all data control threads have been joined
[2026-01-16 23:53:25] 2026-01-16 23:52:46,692 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 23:53:25] 2026-01-16 23:52:46,872 | INFO     | [job] job monitor thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:46,873 | INFO     | [job] retrieve thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,284 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,340 | INFO     | [payload] control thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,364 | INFO     | [payload] failed_post thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,408 | INFO     | [data] copytool_in thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,453 | INFO     | [payload] validate_post thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,534 | INFO     | [job] control thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,567 | INFO     | [data] control thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,697 | INFO     | [job] queue monitor thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,718 | INFO     | [job] validate thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:47,876 | INFO     | [data] copytool_out thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:48,340 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:48,375 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:49,924 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:52:55,942 | INFO     | job.realtimelogging is not enabled
[2026-01-16 23:53:25] 2026-01-16 23:52:56,948 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 23:53:25] 2026-01-16 23:53:12,628 | INFO     | 11444s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-16 23:53:25] 2026-01-16 23:53:15,402 | INFO     | PID=3096121 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 23:53:25] 2026-01-16 23:53:15,402 | INFO     | .. there are 19 such processes running
[2026-01-16 23:53:25] 2026-01-16 23:53:15,406 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 23:53:25] 2026-01-16 23:53:15,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 23:53:25] 2026-01-16 23:53:15,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 23:53:25] 2026-01-16 23:53:19,550 | INFO     | [monitor] cgroup control has ended
[2026-01-16 23:53:25] 2026-01-16 23:53:19,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136231369918272)>', '<ExcThread(monitor, started 136230977132288)>']
[2026-01-16 23:53:25] 2026-01-16 23:53:20,434 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 23:53:25] 2026-01-16 23:53:20,434 | INFO     | [monitor] control thread has ended
[2026-01-16 23:53:25] 2026-01-16 23:53:24,806 | INFO     | all workflow threads have been joined
[2026-01-16 23:53:25] 2026-01-16 23:53:24,806 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 23:53:25] 2026-01-16 23:53:24,807 | INFO     | traces error code: 0
[2026-01-16 23:53:25] 2026-01-16 23:53:24,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 23:53:25] 2026-01-16 23:53:25,156 [wrapper] ==== pilot stdout END ====
[2026-01-16 23:53:25] 2026-01-16 23:53:25,167 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 23:53:25] 2026-01-16 23:53:25,180 [wrapper] pilotpid: 3096121
[2026-01-16 23:53:25] 2026-01-16 23:53:25,189 [wrapper] Pilot exit status: 0
[2026-01-16 23:53:25] 2026-01-16 23:53:25,220 [wrapper] pandaids: 6961933929
[2026-01-16 23:53:25] 2026-01-16 23:53:25,444 [wrapper] cleanup supervisor_pilot 3903486 3096122
[2026-01-16 23:53:25] ./runpilot2-wrapper.sh: line 616: 3903486 Terminated              sleep 900
[2026-01-16 23:53:25] 2026-01-16 23:53:25,457 [wrapper] Test setup, not cleaning
[2026-01-16 23:53:25] 2026-01-16 23:53:25,464 [wrapper] apfmon messages muted
[2026-01-16 23:53:25] 2026-01-16 23:53:25,476 [wrapper] ==== wrapper stdout END ====
[2026-01-16 23:53:25] 2026-01-16 23:53:25,482 [wrapper] ==== wrapper stderr END ====
[2026-01-16 23:53:25]  *** Error codes and diagnostics ***
[2026-01-16 23:53:25]     "exeErrorCode": 0,
[2026-01-16 23:53:25]     "exeErrorDiag": "",
[2026-01-16 23:53:25]     "pilotErrorCode": 0,
[2026-01-16 23:53:25]     "pilotErrorDiag": "",
[2026-01-16 23:53:25]  *** Listing of results directory ***
[2026-01-16 23:53:25] total 442508
[2026-01-16 23:53:25] -rw-r--r-- 1 boinc boinc    579449 Jan  7 13:00 pilot3.tar.gz
[2026-01-16 23:53:25] -rwx------ 1 boinc boinc     36322 Jan  7 13:04 runpilot2-wrapper.sh
[2026-01-16 23:53:25] -rw-r--r-- 1 boinc boinc      5112 Jan  7 13:05 queuedata.json
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc       100 Jan 16 20:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 23:53:25] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 20:41 run_atlas
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc       105 Jan 16 20:41 job.xml
[2026-01-16 23:53:25] -rw-r--r-- 2 boinc boinc 223110077 Jan 16 20:41 EVNT.47898824._000124.pool.root.1
[2026-01-16 23:53:25] -rw-r--r-- 2 boinc boinc     15847 Jan 16 20:41 start_atlas.sh
[2026-01-16 23:53:25] drwxrwx--x 2 boinc boinc      4096 Jan 16 20:41 shared
[2026-01-16 23:53:25] -rw-r--r-- 2 boinc boinc    592400 Jan 16 20:41 input.tar.gz
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 20:41 init_data.xml
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc         0 Jan 16 20:41 boinc_setup_complete
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc         0 Jan 16 20:41 boinc_lockfile
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc      2515 Jan 16 20:41 pandaJob.out
[2026-01-16 23:53:25] -rw------- 1 boinc boinc   1004099 Jan 16 20:41 agis_schedconf.cvmfs.json
[2026-01-16 23:53:25] drwx------ 5 boinc boinc      4096 Jan 16 20:42 pilot3
[2026-01-16 23:53:25] -rw------- 1 boinc boinc 222003876 Jan 16 23:51 HITS.47898826._007457.pool.root.1
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc       530 Jan 16 23:51 boinc_task_state.xml
[2026-01-16 23:53:25] -rw------- 1 boinc boinc      1024 Jan 16 23:52 memory_monitor_summary.json
[2026-01-16 23:53:25] -rw------- 1 boinc boinc   1516246 Jan 16 23:52 agis_ddmendpoints.agis.ALL.json
[2026-01-16 23:53:25] -rw------- 1 boinc boinc    480322 Jan 16 23:52 log.47898826._007457.job.log.tgz.1
[2026-01-16 23:53:25] -rw------- 1 boinc boinc      7727 Jan 16 23:52 heartbeat.json
[2026-01-16 23:53:25] -rw------- 1 boinc boinc        95 Jan 16 23:53 pilot_heartbeat.json
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 23:53 boinc_mmap_file
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc        28 Jan 16 23:53 wrapper_checkpoint.txt
[2026-01-16 23:53:25] -rw------- 1 boinc boinc      5036 Jan 16 23:53 pilotlog.txt
[2026-01-16 23:53:25] -rw------- 1 boinc boinc   1559160 Jan 16 23:53 log.47898826._007457.job.log.1
[2026-01-16 23:53:25] -rw------- 1 boinc boinc       357 Jan 16 23:53 output.list
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc       620 Jan 16 23:53 runtime_log
[2026-01-16 23:53:25] -rw------- 1 boinc boinc   2058240 Jan 16 23:53 result.tar.gz
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc      9168 Jan 16 23:53 runtime_log.err
[2026-01-16 23:53:25] -rw------- 1 boinc boinc       654 Jan 16 23:53 3M6MDmZOix8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmo0hKDmBUX7Jm.diag
[2026-01-16 23:53:25] -rw-rw-r-- 1 boinc boinc     20979 Jan 16 23:53 stderr.txt
[2026-01-16 23:53:25] HITS file was successfully produced:
[2026-01-16 23:53:25] -rw------- 1 boinc boinc 222003876 Jan 16 23:51 shared/HITS.pool.root.1
[2026-01-16 23:53:25]  *** Contents of shared directory: ***
[2026-01-16 23:53:25] total 437304
[2026-01-16 23:53:25] -rw-r--r-- 2 boinc boinc 223110077 Jan 16 20:41 ATLAS.root_0
[2026-01-16 23:53:25] -rw-r--r-- 2 boinc boinc     15847 Jan 16 20:41 start_atlas.sh
[2026-01-16 23:53:25] -rw-r--r-- 2 boinc boinc    592400 Jan 16 20:41 input.tar.gz
[2026-01-16 23:53:25] -rw------- 1 boinc boinc 222003876 Jan 16 23:51 HITS.pool.root.1
[2026-01-16 23:53:25] -rw------- 1 boinc boinc   2058240 Jan 16 23:53 result.tar.gz
23:53:27 (3089605): run_atlas exited; CPU time 66129.047919
23:53:27 (3089605): called boinc_finish(0)

</stderr_txt>
]]>

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