Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:03:54 (862737): wrapper (7.7.26015): starting
09:03:54 (862737): wrapper: running run_atlas (--nthreads 8)
[2026-01-15 09:03:54] Arguments: --nthreads 8
[2026-01-15 09:03:54] Threads: 8
[2026-01-15 09:03:54] Checking for CVMFS
[2026-01-15 09:03:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 09:03:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 09:03:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 09:03:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 09:03:55] 2.13.3.0 2033223 25638 207852 155174 3 709 33075786 40960001 31135 16776704 0 117654565 99.646 121319203 36409 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-15 09:03:55] CVMFS is ok
[2026-01-15 09:03:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 09:03:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 09:03:55] Further information can be found at the LHC@home message board.
[2026-01-15 09:03:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 09:03:55] Checking for apptainer binary...
[2026-01-15 09:03:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 09:03:55] Running /usr/bin/apptainer --version
[2026-01-15 09:03:56] apptainer version 1.4.5-2.el9
[2026-01-15 09:03:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 09:03:56] c-212-17.aglt2.org
[2026-01-15 09:03:56] apptainer works
[2026-01-15 09:03:56] Set ATHENA_PROC_NUMBER=8
[2026-01-15 09:03:56] Set ATHENA_CORE_NUMBER=8
[2026-01-15 09:03:56] Starting ATLAS job with PandaID=6962319601
[2026-01-15 09:03:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 12:34:53]  *** The last 200 lines of the pilot log: ***
[2026-01-15 12:34:53] 2026-01-15 17:34:16,179 | INFO     | .. there are 29 such processes running
[2026-01-15 12:34:53] 2026-01-15 17:34:17,180 | INFO     | time since job start (12594s) is within the limit (174528.0s)
[2026-01-15 12:34:53] 2026-01-15 17:34:17,207 | INFO     | monitor loop #827: job 0:6962319601 is in state 'finished'
[2026-01-15 12:34:53] 2026-01-15 17:34:17,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,068 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 12:34:53] 2026-01-15 17:34:19,085 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3266.685958333334
[2026-01-15 12:34:53] 2026-01-15 17:34:19,123 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6962319601/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,124 | INFO     | extracted standard info from prmon json
[2026-01-15 12:34:53] 2026-01-15 17:34:19,124 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 12:34:53] 2026-01-15 17:34:19,124 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 12:34:53] 2026-01-15 17:34:19,124 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 12:34:53] 2026-01-15 17:34:19,124 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 12:34:53] 2026-01-15 17:34:19,131 | INFO     | fitting pss+swap vs Time
[2026-01-15 12:34:53] 2026-01-15 17:34:19,132 | INFO     | sum of square deviations: 2710630557.4951525
[2026-01-15 12:34:53] 2026-01-15 17:34:19,133 | INFO     | sum of deviations: 67458092321.24272
[2026-01-15 12:34:53] 2026-01-15 17:34:19,133 | INFO     | mean x: 1768492183.5048544
[2026-01-15 12:34:53] 2026-01-15 17:34:19,133 | INFO     | mean y: 2436378.7572815535
[2026-01-15 12:34:53] 2026-01-15 17:34:19,133 | INFO     | intersect: -44009134528.385765
[2026-01-15 12:34:53] 2026-01-15 17:34:19,133 | INFO     | chi2: 3.989013917566619
[2026-01-15 12:34:53] 2026-01-15 17:34:19,133 | INFO     | sum of square deviations: 2518003994.995033
[2026-01-15 12:34:53] 2026-01-15 17:34:19,138 | INFO     | sum of deviations: 78241926406.64177
[2026-01-15 12:34:53] 2026-01-15 17:34:19,138 | INFO     | mean x: 1768492031.004975
[2026-01-15 12:34:53] 2026-01-15 17:34:19,139 | INFO     | mean y: 2444715.3582089553
[2026-01-15 12:34:53] 2026-01-15 17:34:19,139 | INFO     | intersect: -54949899925.73782
[2026-01-15 12:34:53] 2026-01-15 17:34:19,139 | INFO     | chi2: 3.319594025375791
[2026-01-15 12:34:53] 2026-01-15 17:34:19,139 | INFO     | current chi2=3.319594025375791 (change=16.781588282830253 %)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,139 | INFO     | right removable region: 200
[2026-01-15 12:34:53] 2026-01-15 17:34:19,139 | INFO     | sum of square deviations: 2518003384.995033
[2026-01-15 12:34:53] 2026-01-15 17:34:19,140 | INFO     | sum of deviations: 10276798694.840801
[2026-01-15 12:34:53] 2026-01-15 17:34:19,140 | INFO     | mean x: 1768492336.004975
[2026-01-15 12:34:53] 2026-01-15 17:34:19,140 | INFO     | mean y: 2481529.15920398
[2026-01-15 12:34:53] 2026-01-15 17:34:19,140 | INFO     | intersect: -7215316444.741352
[2026-01-15 12:34:53] 2026-01-15 17:34:19,141 | INFO     | chi2: 0.9664188446051134
[2026-01-15 12:34:53] 2026-01-15 17:34:19,141 | INFO     | current chi2=0.9664188446051134 (change=75.77298889960632 %)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,141 | INFO     | sum of square deviations: 2334725224.9948916
[2026-01-15 12:34:53] 2026-01-15 17:34:19,146 | INFO     | sum of deviations: -5269119333.22449
[2026-01-15 12:34:53] 2026-01-15 17:34:19,146 | INFO     | mean x: 1768492488.5051022
[2026-01-15 12:34:53] 2026-01-15 17:34:19,146 | INFO     | mean y: 2494413.224489796
[2026-01-15 12:34:53] 2026-01-15 17:34:19,146 | INFO     | intersect: 3993712678.262471
[2026-01-15 12:34:53] 2026-01-15 17:34:19,146 | INFO     | chi2: 0.747924610614864
[2026-01-15 12:34:53] 2026-01-15 17:34:19,147 | INFO     | current chi2=0.747924610614864 (change=22.60864791802853 %)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,147 | INFO     | left removable region: 20
[2026-01-15 12:34:53] 2026-01-15 17:34:19,147 | INFO     | sum of square deviations: 1808352320.9944415
[2026-01-15 12:34:53] 2026-01-15 17:34:19,148 | INFO     | sum of deviations: 2581301492.8944445
[2026-01-15 12:34:53] 2026-01-15 17:34:19,148 | INFO     | mean x: 1768492610.5055556
[2026-01-15 12:34:53] 2026-01-15 17:34:19,148 | INFO     | mean y: 2508328.605555556
[2026-01-15 12:34:53] 2026-01-15 17:34:19,148 | INFO     | intersect: -2521896104.4644403
[2026-01-15 12:34:53] 2026-01-15 17:34:19,148 | INFO     | chi2: 0.00047536984992497763
[2026-01-15 12:34:53] 2026-01-15 17:34:19,148 | INFO     | current memory leak: 1.43 B/s (using 180 data points, chi2=0.00)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | could have reported an average CPU frequency of 3153 MHz (10 samples)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | ..............................
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | . Timing measurements:
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | . get job = 0 s
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | . initial setup = 2 s
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | . payload setup = 15 s
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | . stage-in = 0 s
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | . payload execution = 12534 s
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | . stage-out = 2 s
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | . log creation = 0 s
[2026-01-15 12:34:53] 2026-01-15 17:34:19,149 | INFO     | ..............................
[2026-01-15 12:34:53] 2026-01-15 17:34:19,186 | INFO     | time since job start (12596s) is within the limit (174528.0s)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,700 | INFO     | 
[2026-01-15 12:34:53] 2026-01-15 17:34:19,701 | INFO     | job summary report
[2026-01-15 12:34:53] 2026-01-15 17:34:19,701 | INFO     | --------------------------------------------------
[2026-01-15 12:34:53] 2026-01-15 17:34:19,701 | INFO     | PanDA job id: 6962319601
[2026-01-15 12:34:53] 2026-01-15 17:34:19,701 | INFO     | task id: 47898826
[2026-01-15 12:34:53] 2026-01-15 17:34:19,701 | INFO     | errors: (none)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | pilot state: finished 
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | transexitcode: 0
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | exeerrorcode: 0
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | exeerrordiag: 
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | exitcode: 0
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | exitmsg: OK
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | cpuconsumptiontime: 48689 s
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | nevents: 400
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | neventsw: 0
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | pid: 886260
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | pgrp: 886260
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | corecount: 8
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | event service: False
[2026-01-15 12:34:53] 2026-01-15 17:34:19,702 | INFO     | sizes: {0: 2283969, 1: 2283969, 11: 2283997, 14: 2284287, 22: 2284315, 12554: 2314452, 12557: 2323450, 12558: 2323506, 12565: 2323700}
[2026-01-15 12:34:53] 2026-01-15 17:34:19,703 | INFO     | --------------------------------------------------
[2026-01-15 12:34:53] 2026-01-15 17:34:19,703 | INFO     | 
[2026-01-15 12:34:53] 2026-01-15 17:34:19,703 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-15 12:34:53] 2026-01-15 17:34:19,732 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,733 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,733 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,733 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,733 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,733 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,733 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,733 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,733 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,733 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | job 6962319601 has completed (purged errors)
[2026-01-15 12:34:53] 2026-01-15 17:34:19,734 | INFO     | overall cleanup function is called
[2026-01-15 12:34:53] 2026-01-15 17:34:20,742 | INFO     | --- collectZombieJob: --- 10, [886260]
[2026-01-15 12:34:53] 2026-01-15 17:34:20,742 | INFO     | zombie collector waiting for pid 886260
[2026-01-15 12:34:53] 2026-01-15 17:34:20,742 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 12:34:53] 2026-01-15 17:34:20,743 | INFO     | collected zombie processes
[2026-01-15 12:34:53] 2026-01-15 17:34:20,743 | INFO     | will attempt to kill all subprocesses of pid=886260
[2026-01-15 12:34:53] 2026-01-15 17:34:20,773 [wrapper] supervise_pilot (15 min periods counter: 15)
[2026-01-15 12:34:53] 2026-01-15 17:34:21,285 | INFO     | process IDs to be killed: [886260] (in reverse order)
[2026-01-15 12:34:53] 2026-01-15 17:34:21,482 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 12:34:53] 2026-01-15 17:34:21,483 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 12:34:53] 2026-01-15 17:34:21,509 | INFO     | did not find any defunct processes belonging to 886260
[2026-01-15 12:34:53] 2026-01-15 17:34:21,536 | INFO     | did not find any defunct processes belonging to 886260
[2026-01-15 12:34:53] 2026-01-15 17:34:21,536 | INFO     | ready for new job
[2026-01-15 12:34:53] 2026-01-15 17:34:21,537 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 12:34:53] 2026-01-15 17:34:21,547 | INFO     | ***************************************
[2026-01-15 12:34:53] 2026-01-15 17:34:21,548 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 12:34:53] 2026-01-15 17:34:21,548 | INFO     | ***************************************
[2026-01-15 12:34:53] 2026-01-15 17:34:21,548 | INFO     | 
[2026-01-15 12:34:53] 2026-01-15 17:34:21,557 | INFO     | architecture information:
[2026-01-15 12:34:53] 2026-01-15 17:34:21,565 | INFO     | executing command: cat /etc/os-release
[2026-01-15 12:34:53] 2026-01-15 17:34:21,598 | INFO     | cat /etc/os-release:
[2026-01-15 12:34:53] NAME="CentOS Linux"
[2026-01-15 12:34:53] VERSION="7 (Core)"
[2026-01-15 12:34:53] ID="centos"
[2026-01-15 12:34:53] ID_LIKE="rhel fedora"
[2026-01-15 12:34:53] VERSION_ID="7"
[2026-01-15 12:34:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 12:34:53] ANSI_COLOR="0;31"
[2026-01-15 12:34:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 12:34:53] HOME_URL="https://www.centos.org/"
[2026-01-15 12:34:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 12:34:53] 
[2026-01-15 12:34:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 12:34:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 12:34:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 12:34:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 12:34:53] 
[2026-01-15 12:34:53] 2026-01-15 17:34:21,599 | INFO     | ***************************************
[2026-01-15 12:34:53] 2026-01-15 17:34:22,106 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-15 12:34:53] 2026-01-15 17:34:22,136 | INFO     | sufficient remaining disk space (127764791296 B)
[2026-01-15 12:34:53] 2026-01-15 17:34:22,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 12:34:53] 2026-01-15 17:34:22,138 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 12:34:53] 2026-01-15 17:34:22,139 | INFO     | update_server=False
[2026-01-15 12:34:53] 2026-01-15 17:34:22,139 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 12:34:53] 2026-01-15 17:34:22,139 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 12:34:53] 2026-01-15 17:34:22,219 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 12:34:53] 2026-01-15 17:34:22,220 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 12:34:53] 2026-01-15 17:34:22,220 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:34:53] 2026-01-15 17:34:22,221 | INFO     | will abort loop
[2026-01-15 12:34:53] 2026-01-15 17:34:22,501 | INFO     | all data control threads have been joined
[2026-01-15 12:34:53] 2026-01-15 17:34:22,744 | INFO     | all job control threads have been joined
[2026-01-15 12:34:53] 2026-01-15 17:34:22,790 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 12:34:53] 2026-01-15 17:34:23,144 | INFO     | [job] retrieve thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:23,195 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:23,209 | INFO     | [job] validate thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:23,227 | INFO     | [job] job monitor thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:23,291 | INFO     | [data] copytool_in thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:23,305 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:23,507 | INFO     | [data] control thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:23,508 | INFO     | all payload control threads have been joined
[2026-01-15 12:34:53] 2026-01-15 17:34:23,749 | INFO     | [job] control thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:23,843 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:24,081 | INFO     | [payload] failed_post thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:24,145 | INFO     | [data] copytool_out thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:24,205 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:24,307 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:34:53] 2026-01-15 17:34:24,513 | INFO     | [payload] control thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:24,520 | INFO     | [payload] validate_post thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:25,313 | INFO     | [job] queue monitor thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:26,804 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 12:34:53] 2026-01-15 17:34:44,330 | INFO     | [monitor] cgroup control has ended
[2026-01-15 12:34:53] 2026-01-15 17:34:45,371 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140178004932416)>', '<ExcThread(monitor, started 140177624246016)>']
[2026-01-15 12:34:53] 2026-01-15 17:34:50,396 | INFO     | all workflow threads have been joined
[2026-01-15 12:34:53] 2026-01-15 17:34:50,396 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 12:34:53] 2026-01-15 17:34:50,397 | INFO     | traces error code: 0
[2026-01-15 12:34:53] 2026-01-15 17:34:50,397 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 12:34:53] 2026-01-15 17:34:53,081 | INFO     | PID=873838 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 12:34:53] 2026-01-15 17:34:53,081 | INFO     | .. there are 29 such processes running
[2026-01-15 12:34:53] 2026-01-15 17:34:53,082 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 12:34:53] 2026-01-15 17:34:53,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 12:34:53] 2026-01-15 17:34:53,082 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 12:34:53] 2026-01-15 17:34:53,082 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 12:34:53] 2026-01-15 17:34:53,082 | CRITICAL | thread 'MainThread' is not alive
[2026-01-15 12:34:53] 2026-01-15 17:34:53,082 | INFO     | [monitor] control thread has ended
[2026-01-15 12:34:53] 2026-01-15 17:34:53,326 [wrapper] ==== pilot stdout END ====
[2026-01-15 12:34:53] 2026-01-15 17:34:53,330 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 12:34:53] 2026-01-15 17:34:53,333 [wrapper] pilotpid: 873838
[2026-01-15 12:34:53] 2026-01-15 17:34:53,338 [wrapper] Pilot exit status: 0
[2026-01-15 12:34:53] 2026-01-15 17:34:53,350 [wrapper] pandaids: 6962319601
[2026-01-15 12:34:53] 2026-01-15 17:34:53,484 [wrapper] cleanup supervisor_pilot 2809779 873839
[2026-01-15 12:34:53] 2026-01-15 17:34:53,488 [wrapper] Test setup, not cleaning
[2026-01-15 12:34:53] 2026-01-15 17:34:53,491 [wrapper] apfmon messages muted
[2026-01-15 12:34:53] 2026-01-15 17:34:53,495 [wrapper] ==== wrapper stdout END ====
[2026-01-15 12:34:53] 2026-01-15 17:34:53,498 [wrapper] ==== wrapper stderr END ====
[2026-01-15 12:34:53]  *** Error codes and diagnostics ***
[2026-01-15 12:34:53]     "exeErrorCode": 0,
[2026-01-15 12:34:53]     "exeErrorDiag": "",
[2026-01-15 12:34:53]     "pilotErrorCode": 0,
[2026-01-15 12:34:53]     "pilotErrorDiag": "",
[2026-01-15 12:34:53]  *** Listing of results directory ***
[2026-01-15 12:34:53] total 444944
[2026-01-15 12:34:53] -rwx------. 1 boincer umatlas     36322 Jan  7 15:59 runpilot2-wrapper.sh
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas    579449 Jan  7 16:00 pilot3.tar.gz
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas      5112 Jan  7 16:02 queuedata.json
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas       100 Jan 15 09:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 12:34:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 09:03 run_atlas
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas       105 Jan 15 09:03 job.xml
[2026-01-15 12:34:53] -rw-r--r--. 2 boincer umatlas 225917383 Jan 15 09:03 EVNT.47898824._000585.pool.root.1
[2026-01-15 12:34:53] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 09:03 shared
[2026-01-15 12:34:53] -rw-r--r--. 2 boincer umatlas    592396 Jan 15 09:03 input.tar.gz
[2026-01-15 12:34:53] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 09:03 start_atlas.sh
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas         0 Jan 15 09:03 boinc_lockfile
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas      2519 Jan 15 09:03 pandaJob.out
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas        57 Jan 15 09:03 setup.sh.local
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas   1004248 Jan 15 09:04 agis_schedconf.cvmfs.json
[2026-01-15 12:34:53] drwx------. 5 boincer umatlas      4096 Jan 15 09:04 pilot3
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas      6957 Jan 15 12:28 init_data.xml
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas       531 Jan 15 12:33 boinc_task_state.xml
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas 221531881 Jan 15 12:33 HITS.47898826._013478.pool.root.1
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas        95 Jan 15 12:34 pilot_heartbeat.json
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas      1074 Jan 15 12:34 memory_monitor_summary.json
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas   1516246 Jan 15 12:34 agis_ddmendpoints.agis.ALL.json
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas    441245 Jan 15 12:34 log.47898826._013478.job.log.tgz.1
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas      7822 Jan 15 12:34 heartbeat.json
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 12:34 boinc_mmap_file
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas        28 Jan 15 12:34 wrapper_checkpoint.txt
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas       892 Jan 15 12:34 pilotlog.txt
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas   1681502 Jan 15 12:34 log.47898826._013478.job.log.1
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas       357 Jan 15 12:34 output.list
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas       620 Jan 15 12:34 runtime_log
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas   2140160 Jan 15 12:34 result.tar.gz
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas      9343 Jan 15 12:34 runtime_log.err
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas       660 Jan 15 12:34 iShMDm4npx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIkdKDm4MKiKn.diag
[2026-01-15 12:34:53] -rw-r--r--. 1 boincer umatlas     21302 Jan 15 12:34 stderr.txt
[2026-01-15 12:34:53] HITS file was successfully produced:
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas 221531881 Jan 15 12:33 shared/HITS.pool.root.1
[2026-01-15 12:34:53]  *** Contents of shared directory: ***
[2026-01-15 12:34:53] total 439660
[2026-01-15 12:34:53] -rw-r--r--. 2 boincer umatlas 225917383 Jan 15 09:03 ATLAS.root_0
[2026-01-15 12:34:53] -rw-r--r--. 2 boincer umatlas    592396 Jan 15 09:03 input.tar.gz
[2026-01-15 12:34:53] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 09:03 start_atlas.sh
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas 221531881 Jan 15 12:33 HITS.pool.root.1
[2026-01-15 12:34:53] -rw-------. 1 boincer umatlas   2140160 Jan 15 12:34 result.tar.gz
12:34:55 (862737): run_atlas exited; CPU time 49241.988869
12:34:55 (862737): called boinc_finish(0)

</stderr_txt>
]]>

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