Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
12:45:12 (551965): wrapper (7.7.26015): starting
12:45:12 (551965): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 12:45:12] Arguments: --nthreads 4
[2026-01-15 12:45:12] Threads: 4
[2026-01-15 12:45:12] Checking for CVMFS
[2026-01-15 12:45:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 12:45:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 12:45:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 12:45:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 12:45:13] 2.13.3.0 3426809 1999 51792 155181 2 188 3616475 6144000 6454 130560 0 13192903 99.998 80634 963 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2026-01-15 12:45:13] CVMFS is ok
[2026-01-15 12:45:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 12:45:13] Checking for apptainer binary...
[2026-01-15 12:45:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 12:45:13] Running /usr/bin/apptainer --version
[2026-01-15 12:45:13] apptainer version 1.4.5
[2026-01-15 12:45:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 12:45:13] Starfish-Cruncher
[2026-01-15 12:45:13] apptainer works
[2026-01-15 12:45:13] Set ATHENA_PROC_NUMBER=4
[2026-01-15 12:45:13] Set ATHENA_CORE_NUMBER=4
[2026-01-15 12:45:13] Starting ATLAS job with PandaID=6970568836
[2026-01-15 12:45:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 14:03:36]  *** The last 200 lines of the pilot log: ***
[2026-01-15 14:03:36]  lfn=log.48215263._050989.job.log.tgz.1
[2026-01-15 14:03:36]  mtime=0
[2026-01-15 14:03:36]  protocol_id=None
[2026-01-15 14:03:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-15 14:03:36]  replicas=None
[2026-01-15 14:03:36]  scope=mc23_13p6TeV
[2026-01-15 14:03:36]  status=None
[2026-01-15 14:03:36]  status_code=0
[2026-01-15 14:03:36]  storage_token=
[2026-01-15 14:03:36]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6970568836/log.48215263._050989.job.log.tgz.1
[2026-01-15 14:03:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/fa/log.48215263._050989.job.log.tgz.1
[2026-01-15 14:03:36]  workdir=None
[2026-01-15 14:03:36] ]
[2026-01-15 14:03:36] 2026-01-15 20:02:41,364 | INFO     | transferring file log.48215263._050989.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6970568836/log.48215263._050989.job.log.tgz.1 to /var/lib/boinc
[2026-01-15 14:03:36] 2026-01-15 20:02:41,364 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6970568836/log.48215263._050989.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.482152
[2026-01-15 14:03:36] 2026-01-15 20:02:41,380 | INFO     | adding to output.list: log.48215263._050989.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/fa/log.48215263._050989.job.log.tg
[2026-01-15 14:03:36] 2026-01-15 20:02:41,381 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 14:03:36] 2026-01-15 20:02:41,381 | INFO     | summary of transferred files:
[2026-01-15 14:03:36] 2026-01-15 20:02:41,381 | INFO     |  -- lfn=log.48215263._050989.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 14:03:36] 2026-01-15 20:02:41,381 | INFO     | stage-out finished correctly
[2026-01-15 14:03:36] 2026-01-15 20:02:41,448 | INFO     | time since job start (4639s) is within the limit (349056.0s)
[2026-01-15 14:03:36] 2026-01-15 20:02:42,755 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 14:03:36] 2026-01-15 20:02:42,852 | INFO     | monitor loop #346: job 0:6970568836 is in state 'finished'
[2026-01-15 14:03:36] 2026-01-15 20:02:42,852 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 14:03:36] 2026-01-15 20:02:43,460 | INFO     | time since job start (4641s) is within the limit (349056.0s)
[2026-01-15 14:03:36] 2026-01-15 20:02:43,520 | INFO     | job 6970568836 has state=finished
[2026-01-15 14:03:36] 2026-01-15 20:02:43,520 | INFO     | preparing for final server update for job 6970568836 in state='finished'
[2026-01-15 14:03:36] 2026-01-15 20:02:43,520 | INFO     | this job has now completed (state=finished)
[2026-01-15 14:03:36] 2026-01-15 20:02:43,520 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 14:03:36] 2026-01-15 20:02:43,520 | INFO     | log transfer has been attempted: DONE
[2026-01-15 14:03:36] 2026-01-15 20:02:43,521 | INFO     | job 6970568836 has finished - writing final server update
[2026-01-15 14:03:36] 2026-01-15 20:02:43,521 | INFO     | total number of processed events: 400 (read)
[2026-01-15 14:03:36] 2026-01-15 20:02:43,521 | INFO     | executing command: lscpu
[2026-01-15 14:03:36] 2026-01-15 20:02:43,551 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 14:03:36] 2026-01-15 20:02:45,355 | INFO     | monitor loop #347: job 0:6970568836 is in state 'finished'
[2026-01-15 14:03:36] 2026-01-15 20:02:45,355 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 14:03:36] 2026-01-15 20:02:45,465 | INFO     | time since job start (4643s) is within the limit (349056.0s)
[2026-01-15 14:03:36] 2026-01-15 20:02:46,457 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 14:03:36] 2026-01-15 20:02:46,461 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3600.805
[2026-01-15 14:03:36] 2026-01-15 20:02:46,466 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6970568836/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 14:03:36] 2026-01-15 20:02:46,467 | INFO     | extracted standard info from prmon json
[2026-01-15 14:03:36] 2026-01-15 20:02:46,467 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 14:03:36] 2026-01-15 20:02:46,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 14:03:36] 2026-01-15 20:02:46,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 14:03:36] 2026-01-15 20:02:46,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 14:03:36] 2026-01-15 20:02:46,468 | INFO     | fitting pss+swap vs Time
[2026-01-15 14:03:36] 2026-01-15 20:02:46,468 | INFO     | sum of square deviations: 101843770.0
[2026-01-15 14:03:36] 2026-01-15 20:02:46,469 | INFO     | sum of deviations: -2897615228.999999
[2026-01-15 14:03:36] 2026-01-15 20:02:46,469 | INFO     | mean x: 1768505125.0
[2026-01-15 14:03:36] 2026-01-15 20:02:46,469 | INFO     | mean y: 2390784.2463768115
[2026-01-15 14:03:36] 2026-01-15 20:02:46,469 | INFO     | intersect: 50319139494.20229
[2026-01-15 14:03:36] 2026-01-15 20:02:46,469 | INFO     | chi2: 0.005314931885408693
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | current memory leak: -28.45 B/s (using 69 data points, chi2=0.01)
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | could have reported an average CPU frequency of 3590 MHz (6 samples)
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | ..............................
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | . Timing measurements:
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | . get job = 0 s
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | . initial setup = 2 s
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | . payload setup = 4 s
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | . stage-in = 0 s
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | . payload execution = 4615 s
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | . stage-out = 0 s
[2026-01-15 14:03:36] 2026-01-15 20:02:46,470 | INFO     | . log creation = 0 s
[2026-01-15 14:03:36] 2026-01-15 20:02:46,471 | INFO     | ..............................
[2026-01-15 14:03:36] 2026-01-15 20:02:46,737 | INFO     | 
[2026-01-15 14:03:36] 2026-01-15 20:02:46,737 | INFO     | job summary report
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | --------------------------------------------------
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | PanDA job id: 6970568836
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | task id: 48215263
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | errors: (none)
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | pilot state: finished 
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | transexitcode: 0
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | exeerrorcode: 0
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | exeerrordiag: 
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | exitcode: 0
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | exitmsg: OK
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | cpuconsumptiontime: 17652 s
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | nevents: 400
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | neventsw: 0
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | pid: 562688
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | pgrp: 562688
[2026-01-15 14:03:36] 2026-01-15 20:02:46,738 | INFO     | corecount: 4
[2026-01-15 14:03:36] 2026-01-15 20:02:46,739 | INFO     | event service: False
[2026-01-15 14:03:36] 2026-01-15 20:02:46,739 | INFO     | sizes: {0: 2283124, 1: 2283987, 4: 2284249, 12: 2284277, 4623: 2310552, 4624: 2319564, 4625: 2319748, 4629: 2319942}
[2026-01-15 14:03:36] 2026-01-15 20:02:46,739 | INFO     | --------------------------------------------------
[2026-01-15 14:03:36] 2026-01-15 20:02:46,739 | INFO     | 
[2026-01-15 14:03:36] 2026-01-15 20:02:46,739 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-01-15 14:03:36] 2026-01-15 20:02:46,756 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,758 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,758 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,758 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,758 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 14:03:36] 2026-01-15 20:02:46,758 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,758 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 14:03:36] 2026-01-15 20:02:46,758 | INFO     | job 6970568836 has completed (purged errors)
[2026-01-15 14:03:36] 2026-01-15 20:02:46,758 | INFO     | overall cleanup function is called
[2026-01-15 14:03:36] 2026-01-15 20:02:47,766 | INFO     | --- collectZombieJob: --- 10, [562688]
[2026-01-15 14:03:36] 2026-01-15 20:02:47,766 | INFO     | zombie collector waiting for pid 562688
[2026-01-15 14:03:36] 2026-01-15 20:02:47,766 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 14:03:36] 2026-01-15 20:02:47,766 | INFO     | collected zombie processes
[2026-01-15 14:03:36] 2026-01-15 20:02:47,766 | INFO     | will attempt to kill all subprocesses of pid=562688
[2026-01-15 14:03:36] 2026-01-15 20:02:47,942 | INFO     | process IDs to be killed: [562688] (in reverse order)
[2026-01-15 14:03:36] 2026-01-15 20:02:48,004 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 14:03:36] 2026-01-15 20:02:48,005 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 14:03:36] 2026-01-15 20:02:48,009 | INFO     | did not find any defunct processes belonging to 562688
[2026-01-15 14:03:36] 2026-01-15 20:02:48,014 | INFO     | did not find any defunct processes belonging to 562688
[2026-01-15 14:03:36] 2026-01-15 20:02:48,014 | INFO     | ready for new job
[2026-01-15 14:03:36] 2026-01-15 20:02:48,014 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 14:03:36] 2026-01-15 20:02:48,016 | INFO     | ***************************************
[2026-01-15 14:03:36] 2026-01-15 20:02:48,016 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 14:03:36] 2026-01-15 20:02:48,016 | INFO     | ***************************************
[2026-01-15 14:03:36] 2026-01-15 20:02:48,016 | INFO     | 
[2026-01-15 14:03:36] 2026-01-15 20:02:48,017 | INFO     | architecture information:
[2026-01-15 14:03:36] 2026-01-15 20:02:48,017 | INFO     | executing command: cat /etc/os-release
[2026-01-15 14:03:36] 2026-01-15 20:02:48,031 | INFO     | cat /etc/os-release:
[2026-01-15 14:03:36] NAME="CentOS Linux"
[2026-01-15 14:03:36] VERSION="7 (Core)"
[2026-01-15 14:03:36] ID="centos"
[2026-01-15 14:03:36] ID_LIKE="rhel fedora"
[2026-01-15 14:03:36] VERSION_ID="7"
[2026-01-15 14:03:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 14:03:36] ANSI_COLOR="0;31"
[2026-01-15 14:03:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 14:03:36] HOME_URL="https://www.centos.org/"
[2026-01-15 14:03:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 14:03:36] 
[2026-01-15 14:03:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 14:03:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 14:03:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 14:03:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 14:03:36] 
[2026-01-15 14:03:36] 2026-01-15 20:02:48,032 | INFO     | ***************************************
[2026-01-15 14:03:36] 2026-01-15 20:02:48,534 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-01-15 14:03:36] 2026-01-15 20:02:48,549 | INFO     | sufficient remaining disk space (1805669892096 B)
[2026-01-15 14:03:36] 2026-01-15 20:02:48,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 14:03:36] 2026-01-15 20:02:48,549 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 14:03:36] 2026-01-15 20:02:48,549 | INFO     | update_server=False
[2026-01-15 14:03:36] 2026-01-15 20:02:48,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 14:03:36] 2026-01-15 20:02:48,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 14:03:36] 2026-01-15 20:02:48,595 | INFO     | all data control threads have been joined
[2026-01-15 14:03:36] 2026-01-15 20:02:48,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 14:03:36] 2026-01-15 20:02:48,863 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 14:03:36] 2026-01-15 20:02:48,863 | INFO     | aborting loop
[2026-01-15 14:03:36] 2026-01-15 20:02:49,465 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 14:03:36] 2026-01-15 20:02:49,550 | INFO     | [job] queue monitor thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:49,555 | INFO     | [job] retrieve thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:49,600 | INFO     | [data] control thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:49,616 | INFO     | all job control threads have been joined
[2026-01-15 14:03:36] 2026-01-15 20:02:49,619 | INFO     | [payload] failed_post thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:49,868 | INFO     | [job] job monitor thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:50,016 | INFO     | [data] copytool_in thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:50,047 | INFO     | all payload control threads have been joined
[2026-01-15 14:03:36] 2026-01-15 20:02:50,325 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:50,621 | INFO     | [job] control thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:50,722 | INFO     | [job] validate thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:50,910 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:50,995 | INFO     | [payload] validate_post thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:51,052 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:51,052 | INFO     | [payload] control thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:51,483 | INFO     | [data] copytool_out thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:52,834 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:02:58,885 | INFO     | job.realtimelogging is not enabled
[2026-01-15 14:03:36] 2026-01-15 20:02:59,890 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 14:03:36] 2026-01-15 20:03:18,732 | INFO     | PID=555864 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 14:03:36] 2026-01-15 20:03:18,732 | INFO     | .. there are 8 such processes running
[2026-01-15 14:03:36] 2026-01-15 20:03:18,732 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 14:03:36] 2026-01-15 20:03:18,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 14:03:36] 2026-01-15 20:03:18,733 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 14:03:36] 2026-01-15 20:03:29,905 | INFO     | [monitor] cgroup control has ended
[2026-01-15 14:03:36] 2026-01-15 20:03:30,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132419371284288)>', '<ExcThread(monitor, started 132418589677312)>']
[2026-01-15 14:03:36] 2026-01-15 20:03:31,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 14:03:36] 2026-01-15 20:03:31,799 | INFO     | [monitor] control thread has ended
[2026-01-15 14:03:36] 2026-01-15 20:03:35,890 | INFO     | all workflow threads have been joined
[2026-01-15 14:03:36] 2026-01-15 20:03:35,890 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 14:03:36] 2026-01-15 20:03:35,890 | INFO     | traces error code: 0
[2026-01-15 14:03:36] 2026-01-15 20:03:35,890 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 14:03:36] 2026-01-15 20:03:35,975 [wrapper] ==== pilot stdout END ====
[2026-01-15 14:03:36] 2026-01-15 20:03:35,978 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 14:03:36] 2026-01-15 20:03:35,980 [wrapper] pilotpid: 555864
[2026-01-15 14:03:36] 2026-01-15 20:03:35,982 [wrapper] Pilot exit status: 0
[2026-01-15 14:03:36] 2026-01-15 20:03:35,998 [wrapper] pandaids: 6970568836
[2026-01-15 14:03:36] 2026-01-15 20:03:36,040 [wrapper] cleanup supervisor_pilot  769824 555865
[2026-01-15 14:03:36] 2026-01-15 20:03:36,042 [wrapper] Test setup, not cleaning
[2026-01-15 14:03:36] 2026-01-15 20:03:36,044 [wrapper] apfmon messages muted
[2026-01-15 14:03:36] 2026-01-15 20:03:36,047 [wrapper] ==== wrapper stdout END ====
[2026-01-15 14:03:36] 2026-01-15 20:03:36,049 [wrapper] ==== wrapper stderr END ====
[2026-01-15 14:03:36]  *** Error codes and diagnostics ***
[2026-01-15 14:03:36]     "exeErrorCode": 0,
[2026-01-15 14:03:36]     "exeErrorDiag": "",
[2026-01-15 14:03:36]     "pilotErrorCode": 0,
[2026-01-15 14:03:36]     "pilotErrorDiag": "",
[2026-01-15 14:03:36]  *** Listing of results directory ***
[2026-01-15 14:03:36] total 732784
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc    579449 Jan 15 02:34 pilot3.tar.gz
[2026-01-15 14:03:36] -rwx------ 1 boinc boinc     36322 Jan 15 02:38 runpilot2-wrapper.sh
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc      5112 Jan 15 02:44 queuedata.json
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc       100 Jan 15 12:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 14:03:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 12:45 run_atlas
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc       105 Jan 15 12:45 job.xml
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc      9664 Jan 15 12:45 init_data.xml
[2026-01-15 14:03:36] -rw-r--r-- 2 boinc boinc 595471143 Jan 15 12:45 EVNT.32794306._001981.pool.root.1
[2026-01-15 14:03:36] -rw-r--r-- 2 boinc boinc     15847 Jan 15 12:45 start_atlas.sh
[2026-01-15 14:03:36] drwxrwx--x 2 boinc boinc      4096 Jan 15 12:45 shared
[2026-01-15 14:03:36] -rw-r--r-- 2 boinc boinc    592406 Jan 15 12:45 input.tar.gz
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc         0 Jan 15 12:45 boinc_lockfile
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc      2509 Jan 15 12:45 pandaJob.out
[2026-01-15 14:03:36] -rw------- 1 boinc boinc   1004083 Jan 15 12:45 agis_schedconf.cvmfs.json
[2026-01-15 14:03:36] -rw------- 1 boinc boinc   1516246 Jan 15 12:45 agis_ddmendpoints.agis.ALL.json
[2026-01-15 14:03:36] drwx------ 5 boinc boinc      4096 Jan 15 12:45 pilot3
[2026-01-15 14:03:36] -rw------- 1 boinc boinc 149051825 Jan 15 14:02 HITS.48215263._050989.pool.root.1
[2026-01-15 14:03:36] -rw------- 1 boinc boinc        95 Jan 15 14:02 pilot_heartbeat.json
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc       530 Jan 15 14:02 boinc_task_state.xml
[2026-01-15 14:03:36] -rw------- 1 boinc boinc      1022 Jan 15 14:02 memory_monitor_summary.json
[2026-01-15 14:03:36] -rw------- 1 boinc boinc    262967 Jan 15 14:02 log.48215263._050989.job.log.tgz.1
[2026-01-15 14:03:36] -rw------- 1 boinc boinc      7756 Jan 15 14:02 heartbeat.json
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc      8192 Jan 15 14:03 boinc_mmap_file
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc        27 Jan 15 14:03 wrapper_checkpoint.txt
[2026-01-15 14:03:36] -rw------- 1 boinc boinc      4903 Jan 15 14:03 pilotlog.txt
[2026-01-15 14:03:36] -rw------- 1 boinc boinc    693543 Jan 15 14:03 log.48215263._050989.job.log.1
[2026-01-15 14:03:36] -rw------- 1 boinc boinc       357 Jan 15 14:03 output.list
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc       620 Jan 15 14:03 runtime_log
[2026-01-15 14:03:36] -rw------- 1 boinc boinc    972800 Jan 15 14:03 result.tar.gz
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc      8933 Jan 15 14:03 runtime_log.err
[2026-01-15 14:03:36] -rw------- 1 boinc boinc       651 Jan 15 14:03 3qeNDmU3X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFwuKDmu21KPn.diag
[2026-01-15 14:03:36] -rw-r--r-- 1 boinc boinc     21383 Jan 15 14:03 stderr.txt
[2026-01-15 14:03:36] HITS file was successfully produced:
[2026-01-15 14:03:36] -rw------- 1 boinc boinc 149051825 Jan 15 14:02 shared/HITS.pool.root.1
[2026-01-15 14:03:36]  *** Contents of shared directory: ***
[2026-01-15 14:03:36] total 728632
[2026-01-15 14:03:36] -rw-r--r-- 2 boinc boinc 595471143 Jan 15 12:45 ATLAS.root_0
[2026-01-15 14:03:36] -rw-r--r-- 2 boinc boinc     15847 Jan 15 12:45 start_atlas.sh
[2026-01-15 14:03:36] -rw-r--r-- 2 boinc boinc    592406 Jan 15 12:45 input.tar.gz
[2026-01-15 14:03:36] -rw------- 1 boinc boinc 149051825 Jan 15 14:02 HITS.pool.root.1
[2026-01-15 14:03:36] -rw------- 1 boinc boinc    972800 Jan 15 14:03 result.tar.gz
14:03:37 (551965): run_atlas exited; CPU time 17712.985177
14:03:37 (551965): called boinc_finish(0)

</stderr_txt>
]]>

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