Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:16:48 (4130758): wrapper (7.7.26015): starting
04:16:48 (4130758): wrapper: running run_atlas (--nthreads 8)
[2026-01-15 04:16:48] Arguments: --nthreads 8
[2026-01-15 04:16:48] Threads: 8
[2026-01-15 04:16:48] Checking for CVMFS
[2026-01-15 04:16:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 04:16:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 04:16:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 04:16:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 04:16:49] 2.11.3.0 1904511 65313 154660 155171 1 26 34766780 45568001 10435 130560 0 289317454 99.745 213060213 20304 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-01-15 04:16:49] CVMFS is ok
[2026-01-15 04:16:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 04:16:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 04:16:49] Further information can be found at the LHC@home message board.
[2026-01-15 04:16:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 04:16:49] Checking for apptainer binary...
[2026-01-15 04:16:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 04:16:49] Running /usr/bin/apptainer --version
[2026-01-15 04:16:49] apptainer version 1.4.1-1.el9
[2026-01-15 04:16:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 04:16:51] wns0020.triumf.lcg
[2026-01-15 04:16:51] apptainer works
[2026-01-15 04:16:51] Set ATHENA_PROC_NUMBER=8
[2026-01-15 04:16:51] Set ATHENA_CORE_NUMBER=8
[2026-01-15 04:16:52] Starting ATLAS job with PandaID=6970569000
[2026-01-15 04:16:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 04:21:40]  *** The last 200 lines of the pilot log: ***
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | WARNING  | wrong length of table data, x=[1768479496.0], y=[8103.0] (must be same and length>=4)
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | INFO     | correcting setup and stagein times since remote i/o verification was done
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | INFO     | ..............................
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . Timing measurements:
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . get job = 0 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . initial setup = 3 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . payload setup = 24 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . stage-in = 1 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . payload execution = 52 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . stage-out = 1 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . log creation = 0 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | ..............................
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6970569000/pilotlog.txt
[2026-01-15 04:21:41] 2026-01-15 12:21:05,764 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-15 04:21:41] - Log from pilotlog.txt -
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | INFO     | extracted standard info from prmon json
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | WARNING  | wrong length of table data, x=[1768479496.0], y=[8103.0] (must be same and length>=4)
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | INFO     | correcting setup and stagein times since remote i/o verification was done
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | INFO     | ..............................
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . Timing measurements:
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . get job = 0 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . initial setup = 3 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . payload setup = 24 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . stage-in = 1 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . payload execution = 52 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . stage-out = 1 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . log creation = 0 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | ..............................
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6970569000/pilotlog.txt
[2026-01-15 04:21:41] 2026-01-15 12:21:05,764 | WARNING  | 
[2026-01-15 04:21:41] [begin log extracts]
[2026-01-15 04:21:41] - Log from pilotlog.txt -
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | INFO     | extracted standard info from prmon json
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 04:21:41] 2026-01-15 12:21:05,745 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | WARNING  | wrong length of table data, x=[1768479496.0], y=[8103.0] (must be same and length>=4)
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | INFO     | correcting setup and stagein times since remote i/o verification was done
[2026-01-15 04:21:41] 2026-01-15 12:21:05,746 | INFO     | ..............................
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . Timing measurements:
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . get job = 0 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . initial setup = 3 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . payload setup = 24 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . stage-in = 1 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . payload execution = 52 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . stage-out = 1 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | . log creation = 0 s
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | ..............................
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-15 04:21:41] 2026-01-15 12:21:05,747 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6970569000/pilotlog.txt
[2026-01-15 04:21:41] [end log extracts]
[2026-01-15 04:21:41] 2026-01-15 12:21:05,765 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-01-15 04:21:41] 2026-01-15 12:21:05,765 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-15 04:21:41] 2026-01-15 12:21:06,240 | INFO     | 
[2026-01-15 04:21:41] 2026-01-15 12:21:06,240 | INFO     | job summary report
[2026-01-15 04:21:41] 2026-01-15 12:21:06,240 | INFO     | --------------------------------------------------
[2026-01-15 04:21:41] 2026-01-15 12:21:06,240 | INFO     | PanDA job id: 6970569000
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | task id: 48215263
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-15 04:18:44,137 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | pilot state: failed 
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | transexitcode: 65
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | exeerrorcode: 65
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | exitcode: 65
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | cpuconsumptiontime: 18 s
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | nevents: 0
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | neventsw: 0
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | pid: 4141057
[2026-01-15 04:21:41] 2026-01-15 12:21:06,241 | INFO     | pgrp: 4141057
[2026-01-15 04:21:41] 2026-01-15 12:21:06,242 | INFO     | corecount: 8
[2026-01-15 04:21:41] 2026-01-15 12:21:06,242 | INFO     | event service: False
[2026-01-15 04:21:41] 2026-01-15 12:21:06,242 | INFO     | sizes: {0: 2283772, 1: 2283971, 11: 2284233, 12: 2284261, 81: 2307481, 82: 2307457, 84: 2311961, 209: 2312099}
[2026-01-15 04:21:41] 2026-01-15 12:21:06,242 | INFO     | --------------------------------------------------
[2026-01-15 04:21:41] 2026-01-15 12:21:06,242 | INFO     | 
[2026-01-15 04:21:41] 2026-01-15 12:21:06,242 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-15 04:21:41] 2026-01-15 12:21:06,397 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,397 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,398 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,399 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,399 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,399 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 04:21:41] 2026-01-15 12:21:06,399 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,399 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 04:21:41] 2026-01-15 12:21:06,399 | INFO     | job 6970569000 has completed (purged errors)
[2026-01-15 04:21:41] 2026-01-15 12:21:06,399 | INFO     | overall cleanup function is called
[2026-01-15 04:21:41] 2026-01-15 12:21:07,406 | INFO     | --- collectZombieJob: --- 10, [4141057]
[2026-01-15 04:21:41] 2026-01-15 12:21:07,406 | INFO     | zombie collector waiting for pid 4141057
[2026-01-15 04:21:41] 2026-01-15 12:21:07,406 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 04:21:41] 2026-01-15 12:21:07,406 | INFO     | collected zombie processes
[2026-01-15 04:21:41] 2026-01-15 12:21:07,407 | INFO     | will attempt to kill all subprocesses of pid=4141057
[2026-01-15 04:21:41] 2026-01-15 12:21:07,923 | INFO     | process IDs to be killed: [4141057] (in reverse order)
[2026-01-15 04:21:41] 2026-01-15 12:21:07,998 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 04:21:41] 2026-01-15 12:21:07,998 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 04:21:41] 2026-01-15 12:21:08,048 | INFO     | did not find any defunct processes belonging to 4141057
[2026-01-15 04:21:41] 2026-01-15 12:21:08,076 | INFO     | did not find any defunct processes belonging to 4141057
[2026-01-15 04:21:41] 2026-01-15 12:21:08,077 | INFO     | ready for new job
[2026-01-15 04:21:41] 2026-01-15 12:21:08,077 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 04:21:41] 2026-01-15 12:21:08,079 | INFO     | ***************************************
[2026-01-15 04:21:41] 2026-01-15 12:21:08,079 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 04:21:41] 2026-01-15 12:21:08,079 | INFO     | ***************************************
[2026-01-15 04:21:41] 2026-01-15 12:21:08,079 | INFO     | 
[2026-01-15 04:21:41] 2026-01-15 12:21:08,081 | INFO     | architecture information:
[2026-01-15 04:21:41] 2026-01-15 12:21:08,146 | INFO     | executing command: cat /etc/os-release
[2026-01-15 04:21:41] 2026-01-15 12:21:08,204 | INFO     | cat /etc/os-release:
[2026-01-15 04:21:41] NAME="CentOS Linux"
[2026-01-15 04:21:41] VERSION="7 (Core)"
[2026-01-15 04:21:41] ID="centos"
[2026-01-15 04:21:41] ID_LIKE="rhel fedora"
[2026-01-15 04:21:41] VERSION_ID="7"
[2026-01-15 04:21:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 04:21:41] ANSI_COLOR="0;31"
[2026-01-15 04:21:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 04:21:41] HOME_URL="https://www.centos.org/"
[2026-01-15 04:21:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 04:21:41] 
[2026-01-15 04:21:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 04:21:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 04:21:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 04:21:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 04:21:41] 
[2026-01-15 04:21:41] 2026-01-15 12:21:08,204 | INFO     | ***************************************
[2026-01-15 04:21:41] 2026-01-15 12:21:08,709 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-15 04:21:41] 2026-01-15 12:21:08,722 | INFO     | sufficient remaining disk space (1341225172992 B)
[2026-01-15 04:21:41] 2026-01-15 12:21:08,722 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 04:21:41] 2026-01-15 12:21:08,722 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 04:21:41] 2026-01-15 12:21:08,723 | INFO     | update_server=False
[2026-01-15 04:21:41] 2026-01-15 12:21:08,723 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 04:21:41] 2026-01-15 12:21:08,750 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 04:21:41] 2026-01-15 12:21:08,750 | INFO     | aborting loop
[2026-01-15 04:21:41] 2026-01-15 12:21:08,756 | INFO     | all payload control threads have been joined
[2026-01-15 04:21:41] 2026-01-15 12:21:09,178 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 04:21:41] 2026-01-15 12:21:09,306 | INFO     | all data control threads have been joined
[2026-01-15 04:21:41] 2026-01-15 12:21:09,647 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 04:21:41] 2026-01-15 12:21:09,693 | INFO     | [monitor] cgroup control has ended
[2026-01-15 04:21:41] 2026-01-15 12:21:09,736 | INFO     | [job] retrieve thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:09,756 | INFO     | [job] job monitor thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:09,762 | INFO     | [payload] control thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:09,801 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:10,312 | INFO     | [data] control thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:10,334 | INFO     | [payload] failed_post thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:10,374 | INFO     | all job control threads have been joined
[2026-01-15 04:21:41] 2026-01-15 12:21:10,579 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:10,653 | INFO     | [job] validate thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:10,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 04:21:41] 2026-01-15 12:21:11,005 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:11,100 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:11,105 | INFO     | [data] copytool_in thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:11,213 | INFO     | [payload] validate_post thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:11,380 | INFO     | [job] control thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:11,671 | INFO     | [data] copytool_out thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:11,861 | INFO     | [job] queue monitor thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:13,186 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 04:21:41] 2026-01-15 12:21:13,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465793611584)>', '<ExcThread(monitor, started 140465395447552)>']
[2026-01-15 04:21:41] 2026-01-15 12:21:18,836 | INFO     | all workflow threads have been joined
[2026-01-15 04:21:41] 2026-01-15 12:21:18,836 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 04:21:41] 2026-01-15 12:21:18,837 | INFO     | traces error code: 0
[2026-01-15 04:21:41] 2026-01-15 12:21:18,837 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 04:21:41] 2026-01-15 12:21:38,587 | INFO     | PID=4134447 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 04:21:41] 2026-01-15 12:21:38,588 | INFO     | .. there are 19 such processes running
[2026-01-15 04:21:41] 2026-01-15 12:21:38,589 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 04:21:41] 2026-01-15 12:21:38,589 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 04:21:41] 2026-01-15 12:21:38,589 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 04:21:41] 2026-01-15 12:21:38,589 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 04:21:41] 2026-01-15 12:21:38,589 | INFO     | [monitor] control thread has ended
[2026-01-15 04:21:41] 2026-01-15 12:21:39,471 [wrapper] ==== pilot stdout END ====
[2026-01-15 04:21:41] 2026-01-15 12:21:39,527 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 04:21:41] 2026-01-15 12:21:39,572 [wrapper] pilotpid: 4134447
[2026-01-15 04:21:41] 2026-01-15 12:21:39,616 [wrapper] Pilot exit status: 0
[2026-01-15 04:21:41] 2026-01-15 12:21:39,808 [wrapper] pandaids: 6970569000
[2026-01-15 04:21:41] 2026-01-15 12:21:40,155 [wrapper] cleanup supervisor_pilot 4134453 4134448
[2026-01-15 04:21:41] 2026-01-15 12:21:40,186 [wrapper] Test setup, not cleaning
[2026-01-15 04:21:41] 2026-01-15 12:21:40,204 [wrapper] apfmon messages muted
[2026-01-15 04:21:41] 2026-01-15 12:21:40,219 [wrapper] ==== wrapper stdout END ====
[2026-01-15 04:21:41] 2026-01-15 12:21:40,249 [wrapper] ==== wrapper stderr END ====
[2026-01-15 04:21:41]  *** Error codes and diagnostics ***
[2026-01-15 04:21:41]     "exeErrorCode": 65,
[2026-01-15 04:21:41]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-01-15 04:21:41]     "pilotErrorCode": 1305,
[2026-01-15 04:21:41]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-01-15 04:21:41]  *** Listing of results directory ***
[2026-01-15 04:21:41] total 583568
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc    579449 Jan 15 00:34 pilot3.tar.gz
[2026-01-15 04:21:41] -rwx------. 1 boinc boinc     36322 Jan 15 00:36 runpilot2-wrapper.sh
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc      5112 Jan 15 00:38 queuedata.json
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc       100 Jan 15 04:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 04:21:41] -rwxr-xr-x. 1 boinc boinc      7986 Jan 15 04:16 run_atlas
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc       105 Jan 15 04:16 job.xml
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc      6445 Jan 15 04:16 init_data.xml
[2026-01-15 04:21:41] -rw-r--r--. 2 boinc boinc 593418598 Jan 15 04:16 EVNT.32794306._001988.pool.root.1
[2026-01-15 04:21:41] -rw-r--r--. 2 boinc boinc     15847 Jan 15 04:16 start_atlas.sh
[2026-01-15 04:21:41] drwxrwx--x. 2 boinc boinc      4096 Jan 15 04:16 shared
[2026-01-15 04:21:41] -rw-r--r--. 2 boinc boinc    592404 Jan 15 04:16 input.tar.gz
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc         0 Jan 15 04:16 boinc_lockfile
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc      2506 Jan 15 04:16 pandaJob.out
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc   1004221 Jan 15 04:17 agis_schedconf.cvmfs.json
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc   1516246 Jan 15 04:17 agis_ddmendpoints.agis.ALL.json
[2026-01-15 04:21:41] drwx------. 5 boinc boinc      4096 Jan 15 04:17 pilot3
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc       523 Jan 15 04:18 boinc_task_state.xml
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc       952 Jan 15 04:18 memory_monitor_summary.json
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc     21869 Jan 15 04:18 log.48215263._051153.job.log.tgz.1
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc      8391 Jan 15 04:21 heartbeat.json
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc        95 Jan 15 04:21 pilot_heartbeat.json
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc       823 Jan 15 04:21 pilotlog.txt
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc      8192 Jan 15 04:21 boinc_mmap_file
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc        22 Jan 15 04:21 wrapper_checkpoint.txt
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc     90866 Jan 15 04:21 log.48215263._051153.job.log.1
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc       188 Jan 15 04:21 output.list
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc       620 Jan 15 04:21 runtime_log
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc    133120 Jan 15 04:21 result.tar.gz
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc       647 Jan 15 04:21 SYXNDmM1X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmJluKDmAqkcHn.diag
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc      8634 Jan 15 04:21 runtime_log.err
[2026-01-15 04:21:41] -rw-r--r--. 1 boinc boinc     21769 Jan 15 04:21 stderr.txt
[2026-01-15 04:21:41] No HITS result produced
[2026-01-15 04:21:41]  *** Contents of shared directory: ***
[2026-01-15 04:21:41] total 580244
[2026-01-15 04:21:41] -rw-r--r--. 2 boinc boinc 593418598 Jan 15 04:16 ATLAS.root_0
[2026-01-15 04:21:41] -rw-r--r--. 2 boinc boinc     15847 Jan 15 04:16 start_atlas.sh
[2026-01-15 04:21:41] -rw-r--r--. 2 boinc boinc    592404 Jan 15 04:16 input.tar.gz
[2026-01-15 04:21:41] -rw-------. 1 boinc boinc    133120 Jan 15 04:21 result.tar.gz
04:21:42 (4130758): run_atlas exited; CPU time 26.728685
04:21:42 (4130758): called boinc_finish(0)

</stderr_txt>
]]>

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