Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:12:42 (1445524): wrapper (7.7.26015): starting
07:12:42 (1445524): wrapper: running run_atlas (--nthreads 8)
[2026-01-15 07:12:42] Arguments: --nthreads 8
[2026-01-15 07:12:42] Threads: 8
[2026-01-15 07:12:42] Checking for CVMFS
[2026-01-15 07:12:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 07:12:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 07:12:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 07:12:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 07:12:43] 2.13.3.0 15397 101895 233784 155170 1 201 32681756 32935936 26338 16776704 0 732176709 99.543 863133948 36432 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 07:12:43] CVMFS is ok
[2026-01-15 07:12:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 07:12:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 07:12:43] Further information can be found at the LHC@home message board.
[2026-01-15 07:12:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 07:12:43] Checking for apptainer binary...
[2026-01-15 07:12:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 07:12:43] Running /usr/bin/apptainer --version
[2026-01-15 07:12:43] apptainer version 1.4.5-2.el9
[2026-01-15 07:12:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 07:12:43] c7-16-8.aglt2.org
[2026-01-15 07:12:43] apptainer works
[2026-01-15 07:12:43] Set ATHENA_PROC_NUMBER=8
[2026-01-15 07:12:43] Set ATHENA_CORE_NUMBER=8
[2026-01-15 07:12:43] Starting ATLAS job with PandaID=6970539327
[2026-01-15 07:12:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 08:52:35]  *** The last 200 lines of the pilot log: ***
[2026-01-15 08:52:35] 2026-01-15 13:51:48,208 | INFO     | transferring file log.48215263._050937.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6970539327/log.48215263._050937.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 08:52:36] 2026-01-15 13:51:48,209 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6970539327/log.48215263._050937.job.log.tgz.1 /tmp/boinchome/slots/4/log.48215263._050937.job
[2026-01-15 08:52:36] 2026-01-15 13:51:48,255 | INFO     | adding to output.list: log.48215263._050937.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b3/a0/log.48215263._050937.job.log.tg
[2026-01-15 08:52:36] 2026-01-15 13:51:48,256 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 08:52:36] 2026-01-15 13:51:48,256 | INFO     | summary of transferred files:
[2026-01-15 08:52:36] 2026-01-15 13:51:48,256 | INFO     |  -- lfn=log.48215263._050937.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 08:52:36] 2026-01-15 13:51:48,257 | INFO     | stage-out finished correctly
[2026-01-15 08:52:36] 2026-01-15 13:51:48,329 | INFO     | monitor loop #356: job 0:6970539327 is in state 'finished'
[2026-01-15 08:52:36] 2026-01-15 13:51:48,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 08:52:36] 2026-01-15 13:51:48,548 | INFO     | PID=1451561 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-15 08:52:36] 2026-01-15 13:51:48,548 | INFO     | .. there are 24 such processes running
[2026-01-15 08:52:36] 2026-01-15 13:51:48,827 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 08:52:36] 2026-01-15 13:51:49,603 | INFO     | time since job start (5912s) is within the limit (349056.0s)
[2026-01-15 08:52:36] 2026-01-15 13:51:50,864 | INFO     | monitor loop #357: job 0:6970539327 is in state 'finished'
[2026-01-15 08:52:36] 2026-01-15 13:51:50,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 08:52:36] 2026-01-15 13:51:51,319 | INFO     | job 6970539327 has state=finished
[2026-01-15 08:52:36] 2026-01-15 13:51:51,319 | INFO     | preparing for final server update for job 6970539327 in state='finished'
[2026-01-15 08:52:36] 2026-01-15 13:51:51,320 | INFO     | this job has now completed (state=finished)
[2026-01-15 08:52:36] 2026-01-15 13:51:51,320 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 08:52:36] 2026-01-15 13:51:51,320 | INFO     | log transfer has been attempted: DONE
[2026-01-15 08:52:36] 2026-01-15 13:51:51,320 | INFO     | job 6970539327 has finished - writing final server update
[2026-01-15 08:52:36] 2026-01-15 13:51:51,320 | INFO     | total number of processed events: 400 (read)
[2026-01-15 08:52:36] 2026-01-15 13:51:51,321 | INFO     | executing command: lscpu
[2026-01-15 08:52:36] 2026-01-15 13:51:51,597 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 08:52:36] 2026-01-15 13:51:51,631 | INFO     | time since job start (5914s) is within the limit (349056.0s)
[2026-01-15 08:52:36] 2026-01-15 13:51:53,369 | INFO     | monitor loop #358: job 0:6970539327 is in state 'finished'
[2026-01-15 08:52:36] 2026-01-15 13:51:53,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 08:52:36] 2026-01-15 13:51:53,641 | INFO     | time since job start (5916s) is within the limit (349056.0s)
[2026-01-15 08:52:36] 2026-01-15 13:51:55,648 | INFO     | time since job start (5918s) is within the limit (349056.0s)
[2026-01-15 08:52:36] 2026-01-15 13:51:55,874 | INFO     | monitor loop #359: job 0:6970539327 is in state 'finished'
[2026-01-15 08:52:36] 2026-01-15 13:51:55,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 08:52:36] 2026-01-15 13:51:57,655 | INFO     | time since job start (5920s) is within the limit (349056.0s)
[2026-01-15 08:52:36] 2026-01-15 13:51:58,379 | INFO     | monitor loop #360: job 0:6970539327 is in state 'finished'
[2026-01-15 08:52:36] 2026-01-15 13:51:58,379 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 08:52:36] 2026-01-15 13:51:59,662 | INFO     | time since job start (5922s) is within the limit (349056.0s)
[2026-01-15 08:52:36] 2026-01-15 13:52:00,884 | INFO     | monitor loop #361: job 0:6970539327 is in state 'finished'
[2026-01-15 08:52:36] 2026-01-15 13:52:00,884 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 08:52:36] 2026-01-15 13:52:01,429 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 08:52:36] 2026-01-15 13:52:01,452 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3067.7799583333326
[2026-01-15 08:52:36] 2026-01-15 13:52:01,466 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6970539327/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 08:52:36] 2026-01-15 13:52:01,467 | INFO     | extracted standard info from prmon json
[2026-01-15 08:52:36] 2026-01-15 13:52:01,467 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 08:52:36] 2026-01-15 13:52:01,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 08:52:36] 2026-01-15 13:52:01,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 08:52:36] 2026-01-15 13:52:01,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 08:52:36] 2026-01-15 13:52:01,469 | INFO     | fitting pss+swap vs Time
[2026-01-15 08:52:36] 2026-01-15 13:52:01,469 | INFO     | sum of square deviations: 218563615.595506
[2026-01-15 08:52:36] 2026-01-15 13:52:01,470 | INFO     | sum of deviations: -2205782161.1123595
[2026-01-15 08:52:36] 2026-01-15 13:52:01,470 | INFO     | mean x: 1768482248.0674157
[2026-01-15 08:52:36] 2026-01-15 13:52:01,470 | INFO     | mean y: 2544416.6853932585
[2026-01-15 08:52:36] 2026-01-15 13:52:01,470 | INFO     | intersect: 17850375970.910454
[2026-01-15 08:52:36] 2026-01-15 13:52:01,470 | INFO     | chi2: 0.013811792355154682
[2026-01-15 08:52:36] 2026-01-15 13:52:01,470 | INFO     | current memory leak: -10.09 B/s (using 89 data points, chi2=0.01)
[2026-01-15 08:52:36] 2026-01-15 13:52:01,470 | INFO     | could have reported an average CPU frequency of 3102 MHz (7 samples)
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | ..............................
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | . Timing measurements:
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | . get job = 0 s
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | . initial setup = 4 s
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | . payload setup = 18 s
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | . stage-in = 0 s
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | . payload execution = 5851 s
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | . stage-out = 3 s
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | . log creation = 0 s
[2026-01-15 08:52:36] 2026-01-15 13:52:01,471 | INFO     | ..............................
[2026-01-15 08:52:36] 2026-01-15 13:52:01,566 | INFO     | 
[2026-01-15 08:52:36] 2026-01-15 13:52:01,567 | INFO     | job summary report
[2026-01-15 08:52:36] 2026-01-15 13:52:01,567 | INFO     | --------------------------------------------------
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | PanDA job id: 6970539327
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | task id: 48215263
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | errors: (none)
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | pilot state: finished 
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | transexitcode: 0
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | exeerrorcode: 0
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | exeerrordiag: 
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | exitcode: 0
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | exitmsg: OK
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | cpuconsumptiontime: 21557 s
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | nevents: 400
[2026-01-15 08:52:36] 2026-01-15 13:52:01,568 | INFO     | neventsw: 0
[2026-01-15 08:52:36] 2026-01-15 13:52:01,569 | INFO     | pid: 1461507
[2026-01-15 08:52:36] 2026-01-15 13:52:01,569 | INFO     | pgrp: 1461507
[2026-01-15 08:52:36] 2026-01-15 13:52:01,569 | INFO     | corecount: 8
[2026-01-15 08:52:36] 2026-01-15 13:52:01,569 | INFO     | event service: False
[2026-01-15 08:52:36] 2026-01-15 13:52:01,569 | INFO     | sizes: {0: 2283124, 1: 2283980, 12: 2283980, 18: 2284270, 23: 2284298, 5875: 2311046, 5878: 2320044, 5880: 2320100, 5891: 2320294}
[2026-01-15 08:52:36] 2026-01-15 13:52:01,569 | INFO     | --------------------------------------------------
[2026-01-15 08:52:36] 2026-01-15 13:52:01,569 | INFO     | 
[2026-01-15 08:52:36] 2026-01-15 13:52:01,569 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-15 08:52:36] 2026-01-15 13:52:01,670 | INFO     | time since job start (5924s) is within the limit (349056.0s)
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,689 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | job 6970539327 has completed (purged errors)
[2026-01-15 08:52:36] 2026-01-15 13:52:01,690 | INFO     | overall cleanup function is called
[2026-01-15 08:52:36] 2026-01-15 13:52:02,702 | INFO     | --- collectZombieJob: --- 10, [1461507]
[2026-01-15 08:52:36] 2026-01-15 13:52:02,702 | INFO     | zombie collector waiting for pid 1461507
[2026-01-15 08:52:36] 2026-01-15 13:52:02,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 08:52:36] 2026-01-15 13:52:02,703 | INFO     | collected zombie processes
[2026-01-15 08:52:36] 2026-01-15 13:52:02,703 | INFO     | will attempt to kill all subprocesses of pid=1461507
[2026-01-15 08:52:36] 2026-01-15 13:52:03,544 | INFO     | process IDs to be killed: [1461507] (in reverse order)
[2026-01-15 08:52:36] 2026-01-15 13:52:03,735 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 08:52:36] 2026-01-15 13:52:03,735 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 08:52:36] 2026-01-15 13:52:03,757 | INFO     | did not find any defunct processes belonging to 1461507
[2026-01-15 08:52:36] 2026-01-15 13:52:03,777 | INFO     | did not find any defunct processes belonging to 1461507
[2026-01-15 08:52:36] 2026-01-15 13:52:03,778 | INFO     | ready for new job
[2026-01-15 08:52:36] 2026-01-15 13:52:03,778 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 08:52:36] 2026-01-15 13:52:03,780 | INFO     | ***************************************
[2026-01-15 08:52:36] 2026-01-15 13:52:03,781 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 08:52:36] 2026-01-15 13:52:03,781 | INFO     | ***************************************
[2026-01-15 08:52:36] 2026-01-15 13:52:03,781 | INFO     | 
[2026-01-15 08:52:36] 2026-01-15 13:52:03,808 | INFO     | architecture information:
[2026-01-15 08:52:36] 2026-01-15 13:52:03,825 | INFO     | executing command: cat /etc/os-release
[2026-01-15 08:52:36] 2026-01-15 13:52:03,884 | INFO     | cat /etc/os-release:
[2026-01-15 08:52:36] NAME="CentOS Linux"
[2026-01-15 08:52:36] VERSION="7 (Core)"
[2026-01-15 08:52:36] ID="centos"
[2026-01-15 08:52:36] ID_LIKE="rhel fedora"
[2026-01-15 08:52:36] VERSION_ID="7"
[2026-01-15 08:52:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 08:52:36] ANSI_COLOR="0;31"
[2026-01-15 08:52:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 08:52:36] HOME_URL="https://www.centos.org/"
[2026-01-15 08:52:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 08:52:36] 
[2026-01-15 08:52:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 08:52:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 08:52:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 08:52:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 08:52:36] 
[2026-01-15 08:52:36] 2026-01-15 13:52:03,884 | INFO     | ***************************************
[2026-01-15 08:52:36] 2026-01-15 13:52:04,387 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-15 08:52:36] 2026-01-15 13:52:04,437 | INFO     | sufficient remaining disk space (70280806400 B)
[2026-01-15 08:52:36] 2026-01-15 13:52:04,437 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 08:52:36] 2026-01-15 13:52:04,437 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 08:52:36] 2026-01-15 13:52:04,437 | INFO     | update_server=False
[2026-01-15 08:52:36] 2026-01-15 13:52:04,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 08:52:36] 2026-01-15 13:52:04,438 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 08:52:36] 2026-01-15 13:52:04,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 08:52:36] 2026-01-15 13:52:04,438 | INFO     | aborting loop
[2026-01-15 08:52:36] 2026-01-15 13:52:04,479 | INFO     | all job control threads have been joined
[2026-01-15 08:52:36] 2026-01-15 13:52:04,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 08:52:36] 2026-01-15 13:52:04,800 | INFO     | all payload control threads have been joined
[2026-01-15 08:52:36] 2026-01-15 13:52:04,871 | INFO     | all data control threads have been joined
[2026-01-15 08:52:36] 2026-01-15 13:52:05,443 | INFO     | [job] retrieve thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,444 | INFO     | [job] job monitor thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,485 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,486 | INFO     | [data] copytool_in thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,486 | INFO     | [job] control thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,610 | INFO     | [payload] failed_post thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,625 | INFO     | [payload] validate_post thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,812 | INFO     | [payload] control thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,862 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,866 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:05,878 | INFO     | [data] control thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:06,172 | INFO     | [job] validate thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:06,425 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:06,444 | INFO     | [data] copytool_out thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:06,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 08:52:36] 2026-01-15 13:52:07,577 | INFO     | [job] queue monitor thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:08,701 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 08:52:36] 2026-01-15 13:52:27,545 | INFO     | [monitor] cgroup control has ended
[2026-01-15 08:52:36] 2026-01-15 13:52:28,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140020175058752)>', '<ExcThread(monitor, started 140019540940544)>']
[2026-01-15 08:52:36] 2026-01-15 13:52:33,204 | INFO     | all workflow threads have been joined
[2026-01-15 08:52:36] 2026-01-15 13:52:33,207 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 08:52:36] 2026-01-15 13:52:33,207 | INFO     | traces error code: 0
[2026-01-15 08:52:36] 2026-01-15 13:52:33,207 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 08:52:36] 2026-01-15 13:52:35,384 | INFO     | PID=1451561 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 08:52:36] 2026-01-15 13:52:35,384 | INFO     | .. there are 24 such processes running
[2026-01-15 08:52:36] 2026-01-15 13:52:35,385 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 08:52:36] 2026-01-15 13:52:35,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 08:52:36] 2026-01-15 13:52:35,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 08:52:36] 2026-01-15 13:52:35,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 08:52:36] 2026-01-15 13:52:35,385 | INFO     | [monitor] control thread has ended
[2026-01-15 08:52:36] 2026-01-15 13:52:35,700 [wrapper] ==== pilot stdout END ====
[2026-01-15 08:52:36] 2026-01-15 13:52:35,728 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 08:52:36] 2026-01-15 13:52:35,761 [wrapper] pilotpid: 1451561
[2026-01-15 08:52:36] 2026-01-15 13:52:35,772 [wrapper] Pilot exit status: 0
[2026-01-15 08:52:36] 2026-01-15 13:52:35,785 [wrapper] pandaids: 6970539327
[2026-01-15 08:52:36] 2026-01-15 13:52:35,897 [wrapper] cleanup supervisor_pilot 1811188 1451563
[2026-01-15 08:52:36] 2026-01-15 13:52:35,899 [wrapper] Test setup, not cleaning
[2026-01-15 08:52:36] 2026-01-15 13:52:35,901 [wrapper] apfmon messages muted
[2026-01-15 08:52:36] 2026-01-15 13:52:35,904 [wrapper] ==== wrapper stdout END ====
[2026-01-15 08:52:36] 2026-01-15 13:52:35,906 [wrapper] ==== wrapper stderr END ====
[2026-01-15 08:52:36]  *** Error codes and diagnostics ***
[2026-01-15 08:52:36]     "exeErrorCode": 0,
[2026-01-15 08:52:36]     "exeErrorDiag": "",
[2026-01-15 08:52:36]     "pilotErrorCode": 0,
[2026-01-15 08:52:36]     "pilotErrorDiag": "",
[2026-01-15 08:52:36]  *** Listing of results directory ***
[2026-01-15 08:52:36] total 729520
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-15 08:52:36] -rwx------. 1 boincer umatlas     36322 Jan 15 03:36 runpilot2-wrapper.sh
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:38 queuedata.json
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas       100 Jan 15 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 08:52:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 07:12 run_atlas
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas       105 Jan 15 07:12 job.xml
[2026-01-15 08:52:36] -rw-r--r--. 2 boincer umatlas 593256336 Jan 15 07:12 EVNT.32794306._001979.pool.root.1
[2026-01-15 08:52:36] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 07:12 start_atlas.sh
[2026-01-15 08:52:36] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 07:12 shared
[2026-01-15 08:52:36] -rw-r--r--. 2 boincer umatlas    592404 Jan 15 07:12 input.tar.gz
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas         0 Jan 15 07:12 boinc_lockfile
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas      2509 Jan 15 07:12 pandaJob.out
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas        57 Jan 15 07:12 setup.sh.local
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas   1004126 Jan 15 07:13 agis_schedconf.cvmfs.json
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas   1516246 Jan 15 07:13 agis_ddmendpoints.agis.ALL.json
[2026-01-15 08:52:36] drwx------. 5 boincer umatlas      4096 Jan 15 07:13 pilot3
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas      6944 Jan 15 08:49 init_data.xml
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas 147629855 Jan 15 08:51 HITS.48215263._050937.pool.root.1
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas       530 Jan 15 08:51 boinc_task_state.xml
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas      1033 Jan 15 08:51 memory_monitor_summary.json
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas    336914 Jan 15 08:51 log.48215263._050937.job.log.tgz.1
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas      7767 Jan 15 08:52 heartbeat.json
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas        27 Jan 15 08:52 wrapper_checkpoint.txt
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 08:52 boinc_mmap_file
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas        95 Jan 15 08:52 pilot_heartbeat.json
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas       823 Jan 15 08:52 pilotlog.txt
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas    768341 Jan 15 08:52 log.48215263._050937.job.log.1
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas       357 Jan 15 08:52 output.list
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas       620 Jan 15 08:52 runtime_log
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas   1126400 Jan 15 08:52 result.tar.gz
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas       654 Jan 15 08:52 Yd3KDmB1X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgkuKDm9UfDvn.diag
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas      9337 Jan 15 08:52 runtime_log.err
[2026-01-15 08:52:36] -rw-r--r--. 1 boincer umatlas     22672 Jan 15 08:52 stderr.txt
[2026-01-15 08:52:36] HITS file was successfully produced:
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas 147629855 Jan 15 08:51 shared/HITS.pool.root.1
[2026-01-15 08:52:36]  *** Contents of shared directory: ***
[2026-01-15 08:52:36] total 725228
[2026-01-15 08:52:36] -rw-r--r--. 2 boincer umatlas 593256336 Jan 15 07:12 ATLAS.root_0
[2026-01-15 08:52:36] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 07:12 start_atlas.sh
[2026-01-15 08:52:36] -rw-r--r--. 2 boincer umatlas    592404 Jan 15 07:12 input.tar.gz
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas 147629855 Jan 15 08:51 HITS.pool.root.1
[2026-01-15 08:52:36] -rw-------. 1 boincer umatlas   1126400 Jan 15 08:52 result.tar.gz
08:52:37 (1445524): run_atlas exited; CPU time 21734.965482
08:52:37 (1445524): called boinc_finish(0)

</stderr_txt>
]]>

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