Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:01:48 (534364): wrapper (7.7.26015): starting
13:01:48 (534364): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 13:01:48] Arguments: --nthreads 12
[2026-01-16 13:01:48] Threads: 12
[2026-01-16 13:01:48] Checking for CVMFS
[2026-01-16 13:01:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 13:01:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 13:01:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 13:01:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 13:01:49] 2.13.3.0 40677 10509 77620 155208 1 236 4036349 4096001 19046 130560 0 85266075 99.982 1154836 230 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 13:01:49] CVMFS is ok
[2026-01-16 13:01:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 13:01:49] Checking for apptainer binary...
[2026-01-16 13:01:49] apptainer is not installed, using version from CVMFS
[2026-01-16 13:01:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 13:01:51] epyc7v12
[2026-01-16 13:01:51] apptainer works
[2026-01-16 13:01:51] Set ATHENA_PROC_NUMBER=12
[2026-01-16 13:01:51] Set ATHENA_CORE_NUMBER=12
[2026-01-16 13:01:51] Starting ATLAS job with PandaID=6970459484
[2026-01-16 13:01:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31423/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 14:34:37]  *** The last 200 lines of the pilot log: ***
[2026-01-16 14:34:37] 2026-01-16 14:33:44,431 | INFO     | adding to output.list: log.48215263._049941.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/aa/log.48215263._049941.job.log.tg
[2026-01-16 14:34:37] 2026-01-16 14:33:44,433 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-16 14:34:37] 2026-01-16 14:33:44,433 | INFO     | summary of transferred files:
[2026-01-16 14:34:37] 2026-01-16 14:33:44,433 | INFO     |  -- lfn=log.48215263._049941.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 14:34:37] 2026-01-16 14:33:44,433 | INFO     | stage-out finished correctly
[2026-01-16 14:34:37] 2026-01-16 14:33:45,117 | INFO     | time since job start (5483s) is within the limit (349056.0s)
[2026-01-16 14:34:37] 2026-01-16 14:33:46,309 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 14:34:37] 2026-01-16 14:33:46,573 | INFO     | job 6970459484 has state=finished
[2026-01-16 14:34:37] 2026-01-16 14:33:46,574 | INFO     | preparing for final server update for job 6970459484 in state='finished'
[2026-01-16 14:34:37] 2026-01-16 14:33:46,574 | INFO     | this job has now completed (state=finished)
[2026-01-16 14:34:37] 2026-01-16 14:33:46,574 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 14:34:37] 2026-01-16 14:33:46,574 | INFO     | log transfer has been attempted: DONE
[2026-01-16 14:34:37] 2026-01-16 14:33:46,574 | INFO     | job 6970459484 has finished - writing final server update
[2026-01-16 14:34:37] 2026-01-16 14:33:46,575 | INFO     | total number of processed events: 400 (read)
[2026-01-16 14:34:37] 2026-01-16 14:33:46,576 | INFO     | executing command: lscpu
[2026-01-16 14:34:37] 2026-01-16 14:33:46,710 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 14:34:37] 2026-01-16 14:33:47,128 | INFO     | time since job start (5485s) is within the limit (349056.0s)
[2026-01-16 14:34:37] 2026-01-16 14:33:48,298 | WARNING  | process 550496 can no longer be monitored (due to stat problems) - aborting
[2026-01-16 14:34:37] 2026-01-16 14:33:48,298 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/0/PanDA_Pilot-6970459484/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 14:34:37] 2026-01-16 14:33:49,135 | INFO     | time since job start (5487s) is within the limit (349056.0s)
[2026-01-16 14:34:37] 2026-01-16 14:33:49,451 | INFO     | number of running child processes to parent process 550496: 1
[2026-01-16 14:34:37] 2026-01-16 14:33:49,451 | INFO     | maximum number of monitored processes: 6
[2026-01-16 14:34:37] 2026-01-16 14:33:51,140 | INFO     | time since job start (5489s) is within the limit (349056.0s)
[2026-01-16 14:34:37] 2026-01-16 14:33:51,955 | INFO     | monitor loop #359: job 0:6970459484 is in state 'finished'
[2026-01-16 14:34:37] 2026-01-16 14:33:51,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:34:37] 2026-01-16 14:33:53,145 | INFO     | time since job start (5491s) is within the limit (349056.0s)
[2026-01-16 14:34:37] 2026-01-16 14:33:54,458 | INFO     | monitor loop #360: job 0:6970459484 is in state 'finished'
[2026-01-16 14:34:37] 2026-01-16 14:33:54,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:34:37] 2026-01-16 14:33:55,152 | INFO     | time since job start (5493s) is within the limit (349056.0s)
[2026-01-16 14:34:37] 2026-01-16 14:33:56,963 | INFO     | monitor loop #361: job 0:6970459484 is in state 'finished'
[2026-01-16 14:34:37] 2026-01-16 14:33:56,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:34:37] 2026-01-16 14:33:57,157 | INFO     | time since job start (5495s) is within the limit (349056.0s)
[2026-01-16 14:34:37] 2026-01-16 14:33:59,471 | INFO     | monitor loop #362: job 0:6970459484 is in state 'finished'
[2026-01-16 14:34:37] 2026-01-16 14:33:59,481 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:34:37] 2026-01-16 14:33:59,755 | INFO     | PID=538567 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 14:34:37] 2026-01-16 14:33:59,756 | INFO     | .. there are 22 such processes running
[2026-01-16 14:34:37] 2026-01-16 14:34:00,361 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 14:34:37] 2026-01-16 14:34:00,420 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2405.8419140624997
[2026-01-16 14:34:37] 2026-01-16 14:34:00,447 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/0/PanDA_Pilot-6970459484/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 14:34:37] 2026-01-16 14:34:00,448 | INFO     | extracted standard info from prmon json
[2026-01-16 14:34:37] 2026-01-16 14:34:00,448 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 14:34:37] 2026-01-16 14:34:00,448 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 14:34:37] 2026-01-16 14:34:00,448 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 14:34:37] 2026-01-16 14:34:00,448 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 14:34:37] 2026-01-16 14:34:00,450 | INFO     | fitting pss+swap vs Time
[2026-01-16 14:34:37] 2026-01-16 14:34:00,451 | INFO     | sum of square deviations: 170944600.5
[2026-01-16 14:34:37] 2026-01-16 14:34:00,451 | INFO     | sum of deviations: 3066575438.500001
[2026-01-16 14:34:37] 2026-01-16 14:34:00,451 | INFO     | mean x: 1768571385.5
[2026-01-16 14:34:37] 2026-01-16 14:34:00,451 | INFO     | mean y: 2695795.548780488
[2026-01-16 14:34:37] 2026-01-16 14:34:00,451 | INFO     | intersect: -31723708876.75449
[2026-01-16 14:34:37] 2026-01-16 14:34:00,452 | INFO     | chi2: 0.0505620930576706
[2026-01-16 14:34:37] 2026-01-16 14:34:00,452 | INFO     | current memory leak: 17.94 B/s (using 82 data points, chi2=0.05)
[2026-01-16 14:34:37] 2026-01-16 14:34:00,452 | INFO     | could have reported an average CPU frequency of 2404 MHz (7 samples)
[2026-01-16 14:34:37] 2026-01-16 14:34:00,452 | INFO     | ..............................
[2026-01-16 14:34:37] 2026-01-16 14:34:00,452 | INFO     | . Timing measurements:
[2026-01-16 14:34:37] 2026-01-16 14:34:00,452 | INFO     | . get job = 0 s
[2026-01-16 14:34:37] 2026-01-16 14:34:00,452 | INFO     | . initial setup = 2 s
[2026-01-16 14:34:37] 2026-01-16 14:34:00,453 | INFO     | . payload setup = 17 s
[2026-01-16 14:34:37] 2026-01-16 14:34:00,453 | INFO     | . stage-in = 0 s
[2026-01-16 14:34:37] 2026-01-16 14:34:00,453 | INFO     | . payload execution = 5422 s
[2026-01-16 14:34:37] 2026-01-16 14:34:00,453 | INFO     | . stage-out = 1 s
[2026-01-16 14:34:37] 2026-01-16 14:34:00,453 | INFO     | . log creation = 0 s
[2026-01-16 14:34:37] 2026-01-16 14:34:00,453 | INFO     | ..............................
[2026-01-16 14:34:37] 2026-01-16 14:34:00,600 | INFO     | 
[2026-01-16 14:34:37] 2026-01-16 14:34:00,600 | INFO     | job summary report
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | --------------------------------------------------
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | PanDA job id: 6970459484
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | task id: 48215263
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | errors: (none)
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | pilot state: finished 
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | transexitcode: 0
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | exeerrorcode: 0
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | exeerrordiag: 
[2026-01-16 14:34:37] 2026-01-16 14:34:00,601 | INFO     | exitcode: 0
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | exitmsg: OK
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | cpuconsumptiontime: 30732 s
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | nevents: 400
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | neventsw: 0
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | pid: 550496
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | pgrp: 550496
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | corecount: 12
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | event service: False
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | sizes: {0: 2283804, 1: 2284003, 2: 2284003, 12: 2284031, 14: 2284321, 23: 2284349, 5443: 2311119, 5446: 2320163, 5448: 2320219, 5462: 2320413}
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | --------------------------------------------------
[2026-01-16 14:34:37] 2026-01-16 14:34:00,602 | INFO     | 
[2026-01-16 14:34:37] 2026-01-16 14:34:00,603 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31423/slots/0
[2026-01-16 14:34:37] 2026-01-16 14:34:00,663 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,664 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,664 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,664 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,664 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,664 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,664 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,664 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,664 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,665 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,665 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,665 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,665 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,665 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,665 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,665 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,665 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 14:34:37] 2026-01-16 14:34:00,666 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,666 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 14:34:37] 2026-01-16 14:34:00,666 | INFO     | job 6970459484 has completed (purged errors)
[2026-01-16 14:34:37] 2026-01-16 14:34:00,670 | INFO     | overall cleanup function is called
[2026-01-16 14:34:37] 2026-01-16 14:34:01,686 | INFO     | --- collectZombieJob: --- 10, [550496]
[2026-01-16 14:34:37] 2026-01-16 14:34:01,686 | INFO     | zombie collector waiting for pid 550496
[2026-01-16 14:34:37] 2026-01-16 14:34:01,686 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 14:34:37] 2026-01-16 14:34:01,686 | INFO     | collected zombie processes
[2026-01-16 14:34:37] 2026-01-16 14:34:01,687 | INFO     | will attempt to kill all subprocesses of pid=550496
[2026-01-16 14:34:37] 2026-01-16 14:34:02,939 | INFO     | process IDs to be killed: [550496] (in reverse order)
[2026-01-16 14:34:37] 2026-01-16 14:34:03,412 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 14:34:37] 2026-01-16 14:34:03,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 14:34:37] 2026-01-16 14:34:03,464 | INFO     | did not find any defunct processes belonging to 550496
[2026-01-16 14:34:37] 2026-01-16 14:34:03,517 | INFO     | did not find any defunct processes belonging to 550496
[2026-01-16 14:34:37] 2026-01-16 14:34:03,517 | INFO     | ready for new job
[2026-01-16 14:34:37] 2026-01-16 14:34:03,517 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 14:34:37] 2026-01-16 14:34:03,527 | INFO     | ***************************************
[2026-01-16 14:34:37] 2026-01-16 14:34:03,528 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 14:34:37] 2026-01-16 14:34:03,528 | INFO     | ***************************************
[2026-01-16 14:34:37] 2026-01-16 14:34:03,528 | INFO     | 
[2026-01-16 14:34:37] 2026-01-16 14:34:03,543 | INFO     | architecture information:
[2026-01-16 14:34:37] 2026-01-16 14:34:03,547 | INFO     | executing command: cat /etc/os-release
[2026-01-16 14:34:37] 2026-01-16 14:34:03,593 | INFO     | cat /etc/os-release:
[2026-01-16 14:34:37] NAME="CentOS Linux"
[2026-01-16 14:34:37] VERSION="7 (Core)"
[2026-01-16 14:34:37] ID="centos"
[2026-01-16 14:34:37] ID_LIKE="rhel fedora"
[2026-01-16 14:34:37] VERSION_ID="7"
[2026-01-16 14:34:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 14:34:37] ANSI_COLOR="0;31"
[2026-01-16 14:34:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 14:34:37] HOME_URL="https://www.centos.org/"
[2026-01-16 14:34:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 14:34:37] 
[2026-01-16 14:34:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 14:34:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 14:34:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 14:34:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 14:34:37] 
[2026-01-16 14:34:37] 2026-01-16 14:34:03,593 | INFO     | ***************************************
[2026-01-16 14:34:37] 2026-01-16 14:34:04,096 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31423/slots/0
[2026-01-16 14:34:37] 2026-01-16 14:34:04,138 | INFO     | sufficient remaining disk space (295459356672 B)
[2026-01-16 14:34:37] 2026-01-16 14:34:04,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 14:34:37] 2026-01-16 14:34:04,138 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 14:34:37] 2026-01-16 14:34:04,138 | INFO     | update_server=False
[2026-01-16 14:34:37] 2026-01-16 14:34:04,138 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 14:34:37] 2026-01-16 14:34:04,497 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-16 14:34:37] 2026-01-16 14:34:04,497 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-16 14:34:37] 2026-01-16 14:34:04,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 14:34:37] 2026-01-16 14:34:04,498 | INFO     | will abort loop
[2026-01-16 14:34:37] 2026-01-16 14:34:04,818 | INFO     | all data control threads have been joined
[2026-01-16 14:34:37] 2026-01-16 14:34:04,844 | INFO     | all payload control threads have been joined
[2026-01-16 14:34:37] 2026-01-16 14:34:05,148 | INFO     | [job] retrieve thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,156 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,196 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 14:34:37] 2026-01-16 14:34:05,344 | INFO     | all job control threads have been joined
[2026-01-16 14:34:37] 2026-01-16 14:34:05,344 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,344 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,484 | INFO     | [payload] validate_post thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,493 | INFO     | [job] validate thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,502 | INFO     | [job] job monitor thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,509 | INFO     | [payload] failed_post thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,618 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 14:34:37] 2026-01-16 14:34:05,823 | INFO     | [data] control thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,849 | INFO     | [payload] control thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:05,872 | INFO     | [data] copytool_in thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:06,030 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 14:34:37] 2026-01-16 14:34:06,041 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:06,349 | INFO     | [job] control thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:06,623 | INFO     | [job] queue monitor thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:07,201 | INFO     | [data] copytool_out thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:10,036 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 14:34:37] 2026-01-16 14:34:30,888 | INFO     | [monitor] cgroup control has ended
[2026-01-16 14:34:37] 2026-01-16 14:34:31,358 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139735533598528)>', '<ExcThread(monitor, started 139734999357184)>']
[2026-01-16 14:34:37] 2026-01-16 14:34:33,058 | INFO     | PID=538567 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 14:34:37] 2026-01-16 14:34:33,061 | INFO     | .. there are 21 such processes running
[2026-01-16 14:34:37] 2026-01-16 14:34:33,062 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 14:34:37] 2026-01-16 14:34:33,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 14:34:37] 2026-01-16 14:34:33,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 14:34:37] 2026-01-16 14:34:33,062 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 14:34:37] 2026-01-16 14:34:33,062 | INFO     | [monitor] control thread has ended
[2026-01-16 14:34:37] 2026-01-16 14:34:36,383 | INFO     | all workflow threads have been joined
[2026-01-16 14:34:37] 2026-01-16 14:34:36,383 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 14:34:37] 2026-01-16 14:34:36,384 | INFO     | traces error code: 0
[2026-01-16 14:34:37] 2026-01-16 14:34:36,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 14:34:37] 2026-01-16 14:34:36,895 [wrapper] ==== pilot stdout END ====
[2026-01-16 14:34:37] 2026-01-16 14:34:36,904 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 14:34:37] 2026-01-16 14:34:36,912 [wrapper] pilotpid: 538567
[2026-01-16 14:34:37] 2026-01-16 14:34:36,920 [wrapper] Pilot exit status: 0
[2026-01-16 14:34:37] 2026-01-16 14:34:36,952 [wrapper] pandaids: 6970459484
[2026-01-16 14:34:37] 2026-01-16 14:34:37,154 [wrapper] cleanup supervisor_pilot 1040259 538568
[2026-01-16 14:34:37] 2026-01-16 14:34:37,168 [wrapper] Test setup, not cleaning
[2026-01-16 14:34:37] 2026-01-16 14:34:37,176 [wrapper] apfmon messages muted
[2026-01-16 14:34:37] 2026-01-16 14:34:37,184 [wrapper] ==== wrapper stdout END ====
[2026-01-16 14:34:37] 2026-01-16 14:34:37,194 [wrapper] ==== wrapper stderr END ====
[2026-01-16 14:34:37]  *** Error codes and diagnostics ***
[2026-01-16 14:34:37]     "exeErrorCode": 0,
[2026-01-16 14:34:37]     "exeErrorDiag": "",
[2026-01-16 14:34:37]     "pilotErrorCode": 0,
[2026-01-16 14:34:37]     "pilotErrorDiag": "",
[2026-01-16 14:34:37]  *** Listing of results directory ***
[2026-01-16 14:34:37] total 743804
[2026-01-16 14:34:37] -rw-r--r-- 1 boinc boinc    579449 Jan 15 08:34 pilot3.tar.gz
[2026-01-16 14:34:37] -rw-r--r-- 1 boinc boinc      5112 Jan 15 08:35 queuedata.json
[2026-01-16 14:34:37] -rwx------ 1 boinc boinc     36322 Jan 15 08:35 runpilot2-wrapper.sh
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc       100 Jan 16 13:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 14:34:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 13:01 run_atlas
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc       105 Jan 16 13:01 job.xml
[2026-01-16 14:34:37] -rw-r--r-- 2 boinc boinc 600330650 Jan 16 13:01 EVNT.32794306._001939.pool.root.1
[2026-01-16 14:34:37] -rw-r--r-- 2 boinc boinc     15847 Jan 16 13:01 start_atlas.sh
[2026-01-16 14:34:37] drwxrwx--x 2 boinc boinc      4096 Jan 16 13:01 shared
[2026-01-16 14:34:37] -rw-r--r-- 2 boinc boinc    592405 Jan 16 13:01 input.tar.gz
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc         0 Jan 16 13:01 boinc_setup_complete
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 13:01 init_data.xml
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc         0 Jan 16 13:01 boinc_lockfile
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc      2509 Jan 16 13:01 pandaJob.out
[2026-01-16 14:34:37] -rw------- 1 boinc boinc   1004091 Jan 16 13:02 agis_schedconf.cvmfs.json
[2026-01-16 14:34:37] -rw------- 1 boinc boinc   1516246 Jan 16 13:02 agis_ddmendpoints.agis.ALL.json
[2026-01-16 14:34:37] drwx------ 5 boinc boinc      4096 Jan 16 13:02 pilot3
[2026-01-16 14:34:37] -rw------- 1 boinc boinc 155051146 Jan 16 14:32 HITS.48215263._049941.pool.root.1
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc       531 Jan 16 14:32 boinc_task_state.xml
[2026-01-16 14:34:37] -rw------- 1 boinc boinc      1021 Jan 16 14:33 memory_monitor_summary.json
[2026-01-16 14:34:37] -rw------- 1 boinc boinc    404814 Jan 16 14:33 log.48215263._049941.job.log.tgz.1
[2026-01-16 14:34:37] -rw------- 1 boinc boinc      7730 Jan 16 14:34 heartbeat.json
[2026-01-16 14:34:37] -rw------- 1 boinc boinc        95 Jan 16 14:34 pilot_heartbeat.json
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 14:34 boinc_mmap_file
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc        27 Jan 16 14:34 wrapper_checkpoint.txt
[2026-01-16 14:34:37] -rw------- 1 boinc boinc      5033 Jan 16 14:34 pilotlog.txt
[2026-01-16 14:34:37] -rw------- 1 boinc boinc    767596 Jan 16 14:34 log.48215263._049941.job.log.1
[2026-01-16 14:34:37] -rw------- 1 boinc boinc       357 Jan 16 14:34 output.list
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc       620 Jan 16 14:34 runtime_log
[2026-01-16 14:34:37] -rw------- 1 boinc boinc   1187840 Jan 16 14:34 result.tar.gz
[2026-01-16 14:34:37] -rw------- 1 boinc boinc       651 Jan 16 14:34 wpOMDmb0X08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCUoKDmUuaU9m.diag
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 14:34 runtime_log.err
[2026-01-16 14:34:37] -rw-rw-r-- 1 boinc boinc     22259 Jan 16 14:34 stderr.txt
[2026-01-16 14:34:37] HITS file was successfully produced:
[2026-01-16 14:34:37] -rw------- 1 boinc boinc 155051146 Jan 16 14:32 shared/HITS.pool.root.1
[2026-01-16 14:34:37]  *** Contents of shared directory: ***
[2026-01-16 14:34:37] total 739448
[2026-01-16 14:34:37] -rw-r--r-- 2 boinc boinc 600330650 Jan 16 13:01 ATLAS.root_0
[2026-01-16 14:34:37] -rw-r--r-- 2 boinc boinc     15847 Jan 16 13:01 start_atlas.sh
[2026-01-16 14:34:37] -rw-r--r-- 2 boinc boinc    592405 Jan 16 13:01 input.tar.gz
[2026-01-16 14:34:37] -rw------- 1 boinc boinc 155051146 Jan 16 14:32 HITS.pool.root.1
[2026-01-16 14:34:37] -rw------- 1 boinc boinc   1187840 Jan 16 14:34 result.tar.gz
14:34:39 (534364): run_atlas exited; CPU time 31031.837357
14:34:39 (534364): called boinc_finish(0)

</stderr_txt>
]]>

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