Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:07:47 (604784): wrapper (7.7.26015): starting
13:07:47 (604784): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 13:07:47] Arguments: --nthreads 12
[2026-01-16 13:07:47] Threads: 12
[2026-01-16 13:07:47] Checking for CVMFS
[2026-01-16 13:07:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 13:07:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 13:07:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 13:07:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 13:07:49] 2.13.3.0 40677 10515 78576 155208 3 236 4036349 4096001 19277 130560 0 85463014 99.982 1154837 230 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 13:07:49] CVMFS is ok
[2026-01-16 13:07:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 13:07:49] Checking for apptainer binary...
[2026-01-16 13:07:49] apptainer is not installed, using version from CVMFS
[2026-01-16 13:07:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 13:07:50] epyc7v12
[2026-01-16 13:07:50] apptainer works
[2026-01-16 13:07:50] Set ATHENA_PROC_NUMBER=12
[2026-01-16 13:07:50] Set ATHENA_CORE_NUMBER=12
[2026-01-16 13:07:50] Starting ATLAS job with PandaID=6970289030
[2026-01-16 13:07:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31423/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 14:37:57]  *** The last 200 lines of the pilot log: ***
[2026-01-16 14:37:57]  workdir=None
[2026-01-16 14:37:57] ]
[2026-01-16 14:37:57] 2026-01-16 14:37:08,518 | INFO     | transferring file log.48215263._045141.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970289030/log.48215263._045141.job.log.tgz.1 t
[2026-01-16 14:37:57] 2026-01-16 14:37:08,518 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970289030/log.48215263._045141.job.log.tgz.1 /opt/boinc/instance_home
[2026-01-16 14:37:57] 2026-01-16 14:37:08,569 | INFO     | adding to output.list: log.48215263._045141.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ee/e7/log.48215263._045141.job.log.tg
[2026-01-16 14:37:57] 2026-01-16 14:37:08,570 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-16 14:37:57] 2026-01-16 14:37:08,577 | INFO     | summary of transferred files:
[2026-01-16 14:37:57] 2026-01-16 14:37:08,577 | INFO     |  -- lfn=log.48215263._045141.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 14:37:57] 2026-01-16 14:37:08,577 | INFO     | stage-out finished correctly
[2026-01-16 14:37:57] 2026-01-16 14:37:08,808 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 14:37:57] 2026-01-16 14:37:09,604 | INFO     | PID=608985 has CPU usage=19.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 14:37:57] 2026-01-16 14:37:09,605 | INFO     | .. there are 22 such processes running
[2026-01-16 14:37:57] 2026-01-16 14:37:09,728 | INFO     | job 6970289030 has state=finished
[2026-01-16 14:37:57] 2026-01-16 14:37:09,729 | INFO     | preparing for final server update for job 6970289030 in state='finished'
[2026-01-16 14:37:57] 2026-01-16 14:37:09,729 | INFO     | this job has now completed (state=finished)
[2026-01-16 14:37:57] 2026-01-16 14:37:09,729 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 14:37:57] 2026-01-16 14:37:09,729 | INFO     | log transfer has been attempted: DONE
[2026-01-16 14:37:57] 2026-01-16 14:37:09,729 | INFO     | job 6970289030 has finished - writing final server update
[2026-01-16 14:37:57] 2026-01-16 14:37:09,730 | INFO     | total number of processed events: 400 (read)
[2026-01-16 14:37:57] 2026-01-16 14:37:09,730 | INFO     | executing command: lscpu
[2026-01-16 14:37:57] 2026-01-16 14:37:09,891 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 14:37:57] 2026-01-16 14:37:10,607 | INFO     | time since job start (5329s) is within the limit (349056.0s)
[2026-01-16 14:37:57] 2026-01-16 14:37:10,734 | INFO     | monitor loop #353: job 0:6970289030 is in state 'finished'
[2026-01-16 14:37:57] 2026-01-16 14:37:10,734 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:37:57] 2026-01-16 14:37:12,612 | INFO     | time since job start (5331s) is within the limit (349056.0s)
[2026-01-16 14:37:57] 2026-01-16 14:37:13,238 | INFO     | monitor loop #354: job 0:6970289030 is in state 'finished'
[2026-01-16 14:37:57] 2026-01-16 14:37:13,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:37:57] 2026-01-16 14:37:14,620 | INFO     | time since job start (5333s) is within the limit (349056.0s)
[2026-01-16 14:37:57] 2026-01-16 14:37:15,744 | INFO     | monitor loop #355: job 0:6970289030 is in state 'finished'
[2026-01-16 14:37:57] 2026-01-16 14:37:15,744 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:37:57] 2026-01-16 14:37:16,626 | INFO     | time since job start (5335s) is within the limit (349056.0s)
[2026-01-16 14:37:57] 2026-01-16 14:37:18,247 | INFO     | monitor loop #356: job 0:6970289030 is in state 'finished'
[2026-01-16 14:37:57] 2026-01-16 14:37:18,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:37:57] 2026-01-16 14:37:18,631 | INFO     | time since job start (5337s) is within the limit (349056.0s)
[2026-01-16 14:37:57] 2026-01-16 14:37:20,636 | INFO     | time since job start (5339s) is within the limit (349056.0s)
[2026-01-16 14:37:57] 2026-01-16 14:37:20,750 | INFO     | monitor loop #357: job 0:6970289030 is in state 'finished'
[2026-01-16 14:37:57] 2026-01-16 14:37:20,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:37:57] 2026-01-16 14:37:22,550 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 14:37:57] 2026-01-16 14:37:22,595 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2403.0449374999994
[2026-01-16 14:37:57] 2026-01-16 14:37:22,647 | INFO     | time since job start (5341s) is within the limit (349056.0s)
[2026-01-16 14:37:57] 2026-01-16 14:37:22,648 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970289030/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 14:37:57] 2026-01-16 14:37:22,652 | INFO     | extracted standard info from prmon json
[2026-01-16 14:37:57] 2026-01-16 14:37:22,653 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 14:37:57] 2026-01-16 14:37:22,653 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 14:37:57] 2026-01-16 14:37:22,653 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 14:37:57] 2026-01-16 14:37:22,653 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 14:37:57] 2026-01-16 14:37:22,659 | INFO     | fitting pss+swap vs Time
[2026-01-16 14:37:57] 2026-01-16 14:37:22,659 | INFO     | sum of square deviations: 158737860.0
[2026-01-16 14:37:57] 2026-01-16 14:37:22,660 | INFO     | sum of deviations: 4943965332.0
[2026-01-16 14:37:57] 2026-01-16 14:37:22,663 | INFO     | mean x: 1768571684.5
[2026-01-16 14:37:57] 2026-01-16 14:37:22,663 | INFO     | mean y: 2683652.95
[2026-01-16 14:37:57] 2026-01-16 14:37:22,663 | INFO     | intersect: -55080313530.73915
[2026-01-16 14:37:57] 2026-01-16 14:37:22,663 | INFO     | chi2: 0.12445520643240336
[2026-01-16 14:37:57] 2026-01-16 14:37:22,664 | INFO     | current memory leak: 31.15 B/s (using 80 data points, chi2=0.12)
[2026-01-16 14:37:57] 2026-01-16 14:37:22,664 | INFO     | could have reported an average CPU frequency of 2391 MHz (6 samples)
[2026-01-16 14:37:57] 2026-01-16 14:37:22,664 | INFO     | ..............................
[2026-01-16 14:37:57] 2026-01-16 14:37:22,664 | INFO     | . Timing measurements:
[2026-01-16 14:37:57] 2026-01-16 14:37:22,664 | INFO     | . get job = 0 s
[2026-01-16 14:37:57] 2026-01-16 14:37:22,665 | INFO     | . initial setup = 2 s
[2026-01-16 14:37:57] 2026-01-16 14:37:22,665 | INFO     | . payload setup = 17 s
[2026-01-16 14:37:57] 2026-01-16 14:37:22,665 | INFO     | . stage-in = 0 s
[2026-01-16 14:37:57] 2026-01-16 14:37:22,665 | INFO     | . payload execution = 5266 s
[2026-01-16 14:37:57] 2026-01-16 14:37:22,665 | INFO     | . stage-out = 1 s
[2026-01-16 14:37:57] 2026-01-16 14:37:22,665 | INFO     | . log creation = 0 s
[2026-01-16 14:37:57] 2026-01-16 14:37:22,665 | INFO     | ..............................
[2026-01-16 14:37:57] 2026-01-16 14:37:23,022 | INFO     | 
[2026-01-16 14:37:57] 2026-01-16 14:37:23,022 | INFO     | job summary report
[2026-01-16 14:37:57] 2026-01-16 14:37:23,022 | INFO     | --------------------------------------------------
[2026-01-16 14:37:57] 2026-01-16 14:37:23,022 | INFO     | PanDA job id: 6970289030
[2026-01-16 14:37:57] 2026-01-16 14:37:23,022 | INFO     | task id: 48215263
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | errors: (none)
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | pilot state: finished 
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | transexitcode: 0
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | exeerrorcode: 0
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | exeerrordiag: 
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | exitcode: 0
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | exitmsg: OK
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | cpuconsumptiontime: 29680 s
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | nevents: 400
[2026-01-16 14:37:57] 2026-01-16 14:37:23,023 | INFO     | neventsw: 0
[2026-01-16 14:37:57] 2026-01-16 14:37:23,024 | INFO     | pid: 616293
[2026-01-16 14:37:57] 2026-01-16 14:37:23,024 | INFO     | pgrp: 616293
[2026-01-16 14:37:57] 2026-01-16 14:37:23,024 | INFO     | corecount: 12
[2026-01-16 14:37:57] 2026-01-16 14:37:23,024 | INFO     | event service: False
[2026-01-16 14:37:57] 2026-01-16 14:37:23,024 | INFO     | sizes: {0: 2283797, 1: 2283996, 12: 2283996, 14: 2284286, 23: 2284314, 5287: 2310874, 5288: 2311001, 5290: 2320157, 5304: 2320295}
[2026-01-16 14:37:57] 2026-01-16 14:37:23,024 | INFO     | --------------------------------------------------
[2026-01-16 14:37:57] 2026-01-16 14:37:23,024 | INFO     | 
[2026-01-16 14:37:57] 2026-01-16 14:37:23,024 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 14:37:57] 2026-01-16 14:37:23,083 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,084 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,087 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,087 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,087 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,087 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,087 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,087 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,087 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 14:37:57] 2026-01-16 14:37:23,088 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,089 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 14:37:57] 2026-01-16 14:37:23,089 | INFO     | job 6970289030 has completed (purged errors)
[2026-01-16 14:37:57] 2026-01-16 14:37:23,089 | INFO     | overall cleanup function is called
[2026-01-16 14:37:57] 2026-01-16 14:37:24,102 | INFO     | --- collectZombieJob: --- 10, [616293]
[2026-01-16 14:37:57] 2026-01-16 14:37:24,102 | INFO     | zombie collector waiting for pid 616293
[2026-01-16 14:37:57] 2026-01-16 14:37:24,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 14:37:57] 2026-01-16 14:37:24,102 | INFO     | collected zombie processes
[2026-01-16 14:37:57] 2026-01-16 14:37:24,103 | INFO     | will attempt to kill all subprocesses of pid=616293
[2026-01-16 14:37:57] 2026-01-16 14:37:25,391 | INFO     | process IDs to be killed: [616293] (in reverse order)
[2026-01-16 14:37:57] 2026-01-16 14:37:25,919 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 14:37:57] 2026-01-16 14:37:25,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 14:37:57] 2026-01-16 14:37:25,961 | INFO     | did not find any defunct processes belonging to 616293
[2026-01-16 14:37:57] 2026-01-16 14:37:25,985 | INFO     | did not find any defunct processes belonging to 616293
[2026-01-16 14:37:57] 2026-01-16 14:37:25,986 | INFO     | ready for new job
[2026-01-16 14:37:57] 2026-01-16 14:37:25,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 14:37:57] 2026-01-16 14:37:25,988 | INFO     | ***************************************
[2026-01-16 14:37:57] 2026-01-16 14:37:25,988 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 14:37:57] 2026-01-16 14:37:25,988 | INFO     | ***************************************
[2026-01-16 14:37:57] 2026-01-16 14:37:25,988 | INFO     | 
[2026-01-16 14:37:57] 2026-01-16 14:37:26,002 | INFO     | architecture information:
[2026-01-16 14:37:57] 2026-01-16 14:37:26,004 | INFO     | executing command: cat /etc/os-release
[2026-01-16 14:37:57] 2026-01-16 14:37:26,047 | INFO     | cat /etc/os-release:
[2026-01-16 14:37:57] NAME="CentOS Linux"
[2026-01-16 14:37:57] VERSION="7 (Core)"
[2026-01-16 14:37:57] ID="centos"
[2026-01-16 14:37:57] ID_LIKE="rhel fedora"
[2026-01-16 14:37:57] VERSION_ID="7"
[2026-01-16 14:37:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 14:37:57] ANSI_COLOR="0;31"
[2026-01-16 14:37:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 14:37:57] HOME_URL="https://www.centos.org/"
[2026-01-16 14:37:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 14:37:57] 
[2026-01-16 14:37:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 14:37:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 14:37:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 14:37:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 14:37:57] 
[2026-01-16 14:37:57] 2026-01-16 14:37:26,051 | INFO     | ***************************************
[2026-01-16 14:37:57] 2026-01-16 14:37:26,553 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 14:37:57] 2026-01-16 14:37:26,597 | INFO     | sufficient remaining disk space (296636907520 B)
[2026-01-16 14:37:57] 2026-01-16 14:37:26,598 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 14:37:57] 2026-01-16 14:37:26,598 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 14:37:57] 2026-01-16 14:37:26,598 | INFO     | update_server=False
[2026-01-16 14:37:57] 2026-01-16 14:37:26,598 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 14:37:57] 2026-01-16 14:37:26,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 14:37:57] 2026-01-16 14:37:26,775 | INFO     | aborting loop
[2026-01-16 14:37:57] 2026-01-16 14:37:26,839 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 14:37:57] 2026-01-16 14:37:27,126 | INFO     | all job control threads have been joined
[2026-01-16 14:37:57] 2026-01-16 14:37:27,213 | INFO     | all data control threads have been joined
[2026-01-16 14:37:57] 2026-01-16 14:37:27,275 | INFO     | all payload control threads have been joined
[2026-01-16 14:37:57] 2026-01-16 14:37:27,604 | INFO     | [job] retrieve thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:27,780 | INFO     | [job] job monitor thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:27,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 14:37:57] 2026-01-16 14:37:28,103 | INFO     | [payload] validate_post thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,129 | INFO     | [payload] failed_post thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,131 | INFO     | [job] control thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,218 | INFO     | [data] control thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,244 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,254 | INFO     | [data] copytool_in thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,255 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,280 | INFO     | [payload] control thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,404 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 14:37:57] 2026-01-16 14:37:28,751 | INFO     | [job] validate thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,848 | INFO     | [data] copytool_out thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:28,898 | INFO     | [job] queue monitor thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:29,002 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:30,023 | INFO     | [monitor] cgroup control has ended
[2026-01-16 14:37:57] 2026-01-16 14:37:32,500 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 14:37:57] 2026-01-16 14:37:34,539 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131597603419968)>', '<ExcThread(monitor, started 131596908746496)>']
[2026-01-16 14:37:57] 2026-01-16 14:37:39,564 | INFO     | all workflow threads have been joined
[2026-01-16 14:37:57] 2026-01-16 14:37:39,564 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 14:37:57] 2026-01-16 14:37:39,565 | INFO     | traces error code: 0
[2026-01-16 14:37:57] 2026-01-16 14:37:39,565 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 14:37:57] 2026-01-16 14:37:57,105 | INFO     | PID=608985 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 14:37:57] 2026-01-16 14:37:57,105 | INFO     | .. there are 22 such processes running
[2026-01-16 14:37:57] 2026-01-16 14:37:57,105 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 14:37:57] 2026-01-16 14:37:57,105 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 14:37:57] 2026-01-16 14:37:57,105 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 14:37:57] 2026-01-16 14:37:57,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 14:37:57] 2026-01-16 14:37:57,106 | INFO     | [monitor] control thread has ended
[2026-01-16 14:37:57] 2026-01-16 14:37:57,390 [wrapper] ==== pilot stdout END ====
[2026-01-16 14:37:57] 2026-01-16 14:37:57,397 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 14:37:57] 2026-01-16 14:37:57,405 [wrapper] pilotpid: 608985
[2026-01-16 14:37:57] 2026-01-16 14:37:57,412 [wrapper] Pilot exit status: 0
[2026-01-16 14:37:57] 2026-01-16 14:37:57,445 [wrapper] pandaids: 6970289030
[2026-01-16 14:37:57] 2026-01-16 14:37:57,637 [wrapper] cleanup supervisor_pilot 1023180 608986
[2026-01-16 14:37:57] 2026-01-16 14:37:57,645 [wrapper] Test setup, not cleaning
[2026-01-16 14:37:57] 2026-01-16 14:37:57,654 [wrapper] apfmon messages muted
[2026-01-16 14:37:57] 2026-01-16 14:37:57,663 [wrapper] ==== wrapper stdout END ====
[2026-01-16 14:37:57] 2026-01-16 14:37:57,672 [wrapper] ==== wrapper stderr END ====
[2026-01-16 14:37:57]  *** Error codes and diagnostics ***
[2026-01-16 14:37:57]     "exeErrorCode": 0,
[2026-01-16 14:37:57]     "exeErrorDiag": "",
[2026-01-16 14:37:57]     "pilotErrorCode": 0,
[2026-01-16 14:37:57]     "pilotErrorDiag": "",
[2026-01-16 14:37:57]  *** Listing of results directory ***
[2026-01-16 14:37:57] total 735672
[2026-01-16 14:37:57] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:50 queuedata.json
[2026-01-16 14:37:57] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:50 pilot3.tar.gz
[2026-01-16 14:37:57] -rwx------ 1 boinc boinc     36322 Jan 15 04:51 runpilot2-wrapper.sh
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc       100 Jan 16 13:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 14:37:57] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 13:07 run_atlas
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc       105 Jan 16 13:07 job.xml
[2026-01-16 14:37:57] -rw-r--r-- 2 boinc boinc 595487131 Jan 16 13:07 EVNT.32794306._001758.pool.root.1
[2026-01-16 14:37:57] -rw-r--r-- 2 boinc boinc     15847 Jan 16 13:07 start_atlas.sh
[2026-01-16 14:37:57] drwxrwx--x 2 boinc boinc      4096 Jan 16 13:07 shared
[2026-01-16 14:37:57] -rw-r--r-- 2 boinc boinc    592399 Jan 16 13:07 input.tar.gz
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 13:07 init_data.xml
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc         0 Jan 16 13:07 boinc_setup_complete
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc         0 Jan 16 13:07 boinc_lockfile
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc      2505 Jan 16 13:07 pandaJob.out
[2026-01-16 14:37:57] -rw------- 1 boinc boinc   1004091 Jan 16 13:08 agis_schedconf.cvmfs.json
[2026-01-16 14:37:57] -rw------- 1 boinc boinc   1516246 Jan 16 13:08 agis_ddmendpoints.agis.ALL.json
[2026-01-16 14:37:57] drwx------ 5 boinc boinc      4096 Jan 16 13:08 pilot3
[2026-01-16 14:37:57] -rw------- 1 boinc boinc 151660795 Jan 16 14:36 HITS.48215263._045141.pool.root.1
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc       530 Jan 16 14:36 boinc_task_state.xml
[2026-01-16 14:37:57] -rw------- 1 boinc boinc      1021 Jan 16 14:37 memory_monitor_summary.json
[2026-01-16 14:37:57] -rw------- 1 boinc boinc        95 Jan 16 14:37 pilot_heartbeat.json
[2026-01-16 14:37:57] -rw------- 1 boinc boinc    379885 Jan 16 14:37 log.48215263._045141.job.log.tgz.1
[2026-01-16 14:37:57] -rw------- 1 boinc boinc      7728 Jan 16 14:37 heartbeat.json
[2026-01-16 14:37:57] -rw------- 1 boinc boinc       822 Jan 16 14:37 pilotlog.txt
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 14:37 boinc_mmap_file
[2026-01-16 14:37:57] -rw------- 1 boinc boinc    747126 Jan 16 14:37 log.48215263._045141.job.log.1
[2026-01-16 14:37:57] -rw------- 1 boinc boinc       357 Jan 16 14:37 output.list
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc       620 Jan 16 14:37 runtime_log
[2026-01-16 14:37:57] -rw------- 1 boinc boinc   1146880 Jan 16 14:37 result.tar.gz
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 14:37 runtime_log.err
[2026-01-16 14:37:57] -rw------- 1 boinc boinc       652 Jan 16 14:37 CHMKDmmVU08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmC7tKDmyMNlUn.diag
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc        27 Jan 16 14:37 wrapper_checkpoint.txt
[2026-01-16 14:37:57] -rw-rw-r-- 1 boinc boinc     22228 Jan 16 14:37 stderr.txt
[2026-01-16 14:37:57] HITS file was successfully produced:
[2026-01-16 14:37:57] -rw------- 1 boinc boinc 151660795 Jan 16 14:36 shared/HITS.pool.root.1
[2026-01-16 14:37:57]  *** Contents of shared directory: ***
[2026-01-16 14:37:57] total 731364
[2026-01-16 14:37:57] -rw-r--r-- 2 boinc boinc 595487131 Jan 16 13:07 ATLAS.root_0
[2026-01-16 14:37:57] -rw-r--r-- 2 boinc boinc     15847 Jan 16 13:07 start_atlas.sh
[2026-01-16 14:37:57] -rw-r--r-- 2 boinc boinc    592399 Jan 16 13:07 input.tar.gz
[2026-01-16 14:37:57] -rw------- 1 boinc boinc 151660795 Jan 16 14:36 HITS.pool.root.1
[2026-01-16 14:37:57] -rw------- 1 boinc boinc   1146880 Jan 16 14:37 result.tar.gz
14:37:59 (604784): run_atlas exited; CPU time 29975.311008
14:37:59 (604784): called boinc_finish(0)

</stderr_txt>
]]>

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