Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
11:32:50 (68911): wrapper (7.7.26015): starting
11:32:50 (68911): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 11:32:50] Arguments: --nthreads 12
[2026-01-16 11:32:50] Threads: 12
[2026-01-16 11:32:50] Checking for CVMFS
[2026-01-16 11:32:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 11:32:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 11:32:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 11:32:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 11:32:51] 2.13.3.0 40677 10420 77700 155206 2 236 4021357 4096000 19520 130560 0 83969713 99.981 1152077 230 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 11:32:51] CVMFS is ok
[2026-01-16 11:32:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 11:32:51] Checking for apptainer binary...
[2026-01-16 11:32:51] apptainer is not installed, using version from CVMFS
[2026-01-16 11:32:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 11:32:53] epyc7v12
[2026-01-16 11:32:53] apptainer works
[2026-01-16 11:32:53] Set ATHENA_PROC_NUMBER=12
[2026-01-16 11:32:53] Set ATHENA_CORE_NUMBER=12
[2026-01-16 11:32:53] Starting ATLAS job with PandaID=6970289702
[2026-01-16 11:32:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31423/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 13:07:41]  *** The last 200 lines of the pilot log: ***
[2026-01-16 13:07:41] 2026-01-16 13:06:15,175 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-16 13:07:41] 2026-01-16 13:06:15,175 | INFO     | summary of transferred files:
[2026-01-16 13:07:41] 2026-01-16 13:06:15,175 | INFO     |  -- lfn=log.48215263._045519.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 13:07:41] 2026-01-16 13:06:15,176 | INFO     | stage-out finished correctly
[2026-01-16 13:07:41] 2026-01-16 13:06:15,468 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 13:07:41] 2026-01-16 13:06:16,048 | WARNING  | process 80431 can no longer be monitored (due to stat problems) - aborting
[2026-01-16 13:07:41] 2026-01-16 13:06:16,048 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970289702/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 13:07:41] 2026-01-16 13:06:16,120 | INFO     | time since job start (5571s) is within the limit (349056.0s)
[2026-01-16 13:07:41] 2026-01-16 13:06:17,221 | INFO     | number of running child processes to parent process 80431: 1
[2026-01-16 13:07:41] 2026-01-16 13:06:17,222 | INFO     | maximum number of monitored processes: 6
[2026-01-16 13:07:41] 2026-01-16 13:06:17,839 | INFO     | job 6970289702 has state=finished
[2026-01-16 13:07:41] 2026-01-16 13:06:17,840 | INFO     | preparing for final server update for job 6970289702 in state='finished'
[2026-01-16 13:07:41] 2026-01-16 13:06:17,840 | INFO     | this job has now completed (state=finished)
[2026-01-16 13:07:41] 2026-01-16 13:06:17,840 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 13:07:41] 2026-01-16 13:06:17,840 | INFO     | log transfer has been attempted: DONE
[2026-01-16 13:07:41] 2026-01-16 13:06:17,840 | INFO     | job 6970289702 has finished - writing final server update
[2026-01-16 13:07:41] 2026-01-16 13:06:17,841 | INFO     | total number of processed events: 400 (read)
[2026-01-16 13:07:41] 2026-01-16 13:06:17,841 | INFO     | executing command: lscpu
[2026-01-16 13:07:41] 2026-01-16 13:06:17,983 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 13:07:41] 2026-01-16 13:06:18,128 | INFO     | time since job start (5573s) is within the limit (349056.0s)
[2026-01-16 13:07:41] 2026-01-16 13:06:19,725 | INFO     | monitor loop #366: job 0:6970289702 is in state 'finished'
[2026-01-16 13:07:41] 2026-01-16 13:06:19,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:07:41] 2026-01-16 13:06:20,135 | INFO     | time since job start (5575s) is within the limit (349056.0s)
[2026-01-16 13:07:41] 2026-01-16 13:06:22,244 | INFO     | monitor loop #367: job 0:6970289702 is in state 'finished'
[2026-01-16 13:07:41] 2026-01-16 13:06:22,244 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:07:41] 2026-01-16 13:06:22,630 | INFO     | PID=73111 has CPU usage=19.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 13:07:41] 2026-01-16 13:06:22,631 | INFO     | .. there are 22 such processes running
[2026-01-16 13:07:41] 2026-01-16 13:06:23,635 | INFO     | time since job start (5578s) is within the limit (349056.0s)
[2026-01-16 13:07:41] 2026-01-16 13:06:24,747 | INFO     | monitor loop #368: job 0:6970289702 is in state 'finished'
[2026-01-16 13:07:41] 2026-01-16 13:06:24,747 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:07:41] 2026-01-16 13:06:25,640 | INFO     | time since job start (5580s) is within the limit (349056.0s)
[2026-01-16 13:07:41] 2026-01-16 13:06:27,251 | INFO     | monitor loop #369: job 0:6970289702 is in state 'finished'
[2026-01-16 13:07:41] 2026-01-16 13:06:27,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:07:41] 2026-01-16 13:06:27,650 | INFO     | time since job start (5582s) is within the limit (349056.0s)
[2026-01-16 13:07:41] 2026-01-16 13:06:29,655 | INFO     | time since job start (5584s) is within the limit (349056.0s)
[2026-01-16 13:07:41] 2026-01-16 13:06:29,754 | INFO     | monitor loop #370: job 0:6970289702 is in state 'finished'
[2026-01-16 13:07:41] 2026-01-16 13:06:29,754 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:07:41] 2026-01-16 13:06:31,380 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 13:07:41] 2026-01-16 13:06:31,421 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2409.012492187499
[2026-01-16 13:07:41] 2026-01-16 13:06:31,448 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970289702/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 13:07:41] 2026-01-16 13:06:31,449 | INFO     | extracted standard info from prmon json
[2026-01-16 13:07:41] 2026-01-16 13:06:31,449 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 13:07:41] 2026-01-16 13:06:31,449 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 13:07:41] 2026-01-16 13:06:31,449 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 13:07:41] 2026-01-16 13:06:31,449 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 13:07:41] 2026-01-16 13:06:31,452 | INFO     | fitting pss+swap vs Time
[2026-01-16 13:07:41] 2026-01-16 13:06:31,452 | INFO     | sum of square deviations: 183761585.0
[2026-01-16 13:07:41] 2026-01-16 13:06:31,452 | INFO     | sum of deviations: 4775405679.0
[2026-01-16 13:07:41] 2026-01-16 13:06:31,452 | INFO     | mean x: 1768566112.5
[2026-01-16 13:07:41] 2026-01-16 13:06:31,453 | INFO     | mean y: 2684398.0476190476
[2026-01-16 13:07:41] 2026-01-16 13:06:31,453 | INFO     | intersect: -45956979354.958496
[2026-01-16 13:07:41] 2026-01-16 13:06:31,453 | INFO     | chi2: 0.1754292904518996
[2026-01-16 13:07:41] 2026-01-16 13:06:31,453 | INFO     | current memory leak: 25.99 B/s (using 84 data points, chi2=0.18)
[2026-01-16 13:07:41] 2026-01-16 13:06:31,453 | INFO     | could have reported an average CPU frequency of 2398 MHz (7 samples)
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | ..............................
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | . Timing measurements:
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | . get job = 0 s
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | . initial setup = 2 s
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | . payload setup = 18 s
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | . stage-in = 0 s
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | . payload execution = 5506 s
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | . stage-out = 1 s
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | . log creation = 0 s
[2026-01-16 13:07:41] 2026-01-16 13:06:31,454 | INFO     | ..............................
[2026-01-16 13:07:41] 2026-01-16 13:06:31,620 | INFO     | 
[2026-01-16 13:07:41] 2026-01-16 13:06:31,621 | INFO     | job summary report
[2026-01-16 13:07:41] 2026-01-16 13:06:31,621 | INFO     | --------------------------------------------------
[2026-01-16 13:07:41] 2026-01-16 13:06:31,621 | INFO     | PanDA job id: 6970289702
[2026-01-16 13:07:41] 2026-01-16 13:06:31,621 | INFO     | task id: 48215263
[2026-01-16 13:07:41] 2026-01-16 13:06:31,621 | INFO     | errors: (none)
[2026-01-16 13:07:41] 2026-01-16 13:06:31,621 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 13:07:41] 2026-01-16 13:06:31,621 | INFO     | pilot state: finished 
[2026-01-16 13:07:41] 2026-01-16 13:06:31,621 | INFO     | transexitcode: 0
[2026-01-16 13:07:41] 2026-01-16 13:06:31,621 | INFO     | exeerrorcode: 0
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | exeerrordiag: 
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | exitcode: 0
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | exitmsg: OK
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | cpuconsumptiontime: 30264 s
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | nevents: 400
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | neventsw: 0
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | pid: 80431
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | pgrp: 80431
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | corecount: 12
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | event service: False
[2026-01-16 13:07:41] 2026-01-16 13:06:31,622 | INFO     | sizes: {0: 2283803, 1: 2284002, 2: 2284030, 13: 2284030, 15: 2284348, 23: 2284376, 5528: 2311318, 5529: 2311317, 5532: 2320473, 5548: 2320611}
[2026-01-16 13:07:41] 2026-01-16 13:06:31,623 | INFO     | --------------------------------------------------
[2026-01-16 13:07:41] 2026-01-16 13:06:31,623 | INFO     | 
[2026-01-16 13:07:41] 2026-01-16 13:06:31,623 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 13:07:41] 2026-01-16 13:06:31,661 | INFO     | time since job start (5586s) is within the limit (349056.0s)
[2026-01-16 13:07:41] 2026-01-16 13:06:31,676 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,676 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,676 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,676 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,676 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,676 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,676 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,677 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,679 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 13:07:41] 2026-01-16 13:06:31,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,680 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 13:07:41] 2026-01-16 13:06:31,680 | INFO     | job 6970289702 has completed (purged errors)
[2026-01-16 13:07:41] 2026-01-16 13:06:31,682 | INFO     | overall cleanup function is called
[2026-01-16 13:07:41] 2026-01-16 13:06:32,693 | INFO     | --- collectZombieJob: --- 10, [80431]
[2026-01-16 13:07:41] 2026-01-16 13:06:32,693 | INFO     | zombie collector waiting for pid 80431
[2026-01-16 13:07:41] 2026-01-16 13:06:32,693 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 13:07:41] 2026-01-16 13:06:32,694 | INFO     | collected zombie processes
[2026-01-16 13:07:41] 2026-01-16 13:06:32,694 | INFO     | will attempt to kill all subprocesses of pid=80431
[2026-01-16 13:07:41] 2026-01-16 13:06:33,962 | INFO     | process IDs to be killed: [80431] (in reverse order)
[2026-01-16 13:07:41] 2026-01-16 13:06:34,622 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 13:07:41] 2026-01-16 13:06:34,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 13:07:41] 2026-01-16 13:06:34,669 | INFO     | did not find any defunct processes belonging to 80431
[2026-01-16 13:07:41] 2026-01-16 13:06:34,693 | INFO     | did not find any defunct processes belonging to 80431
[2026-01-16 13:07:41] 2026-01-16 13:06:34,694 | INFO     | ready for new job
[2026-01-16 13:07:41] 2026-01-16 13:06:34,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 13:07:41] 2026-01-16 13:06:34,696 | INFO     | ***************************************
[2026-01-16 13:07:41] 2026-01-16 13:06:34,696 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 13:07:41] 2026-01-16 13:06:34,696 | INFO     | ***************************************
[2026-01-16 13:07:41] 2026-01-16 13:06:34,696 | INFO     | 
[2026-01-16 13:07:41] 2026-01-16 13:06:34,716 | INFO     | architecture information:
[2026-01-16 13:07:41] 2026-01-16 13:06:34,719 | INFO     | executing command: cat /etc/os-release
[2026-01-16 13:07:41] 2026-01-16 13:06:34,772 | INFO     | cat /etc/os-release:
[2026-01-16 13:07:41] NAME="CentOS Linux"
[2026-01-16 13:07:41] VERSION="7 (Core)"
[2026-01-16 13:07:41] ID="centos"
[2026-01-16 13:07:41] ID_LIKE="rhel fedora"
[2026-01-16 13:07:41] VERSION_ID="7"
[2026-01-16 13:07:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 13:07:41] ANSI_COLOR="0;31"
[2026-01-16 13:07:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 13:07:41] HOME_URL="https://www.centos.org/"
[2026-01-16 13:07:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 13:07:41] 
[2026-01-16 13:07:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 13:07:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 13:07:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 13:07:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 13:07:41] 
[2026-01-16 13:07:41] 2026-01-16 13:06:34,772 | INFO     | ***************************************
[2026-01-16 13:07:41] 2026-01-16 13:06:35,275 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 13:07:41] 2026-01-16 13:06:35,323 | INFO     | sufficient remaining disk space (285178068992 B)
[2026-01-16 13:07:41] 2026-01-16 13:06:35,323 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 13:07:41] 2026-01-16 13:06:35,324 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 13:07:41] 2026-01-16 13:06:35,324 | INFO     | update_server=False
[2026-01-16 13:07:41] 2026-01-16 13:06:35,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 13:07:41] 2026-01-16 13:06:35,327 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 13:07:41] 2026-01-16 13:06:35,411 | INFO     | all job control threads have been joined
[2026-01-16 13:07:41] 2026-01-16 13:06:35,772 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 13:07:41] 2026-01-16 13:06:35,772 | INFO     | aborting loop
[2026-01-16 13:07:41] 2026-01-16 13:06:35,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 13:07:41] 2026-01-16 13:06:36,334 | INFO     | [job] retrieve thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:36,394 | INFO     | all data control threads have been joined
[2026-01-16 13:07:41] 2026-01-16 13:06:36,416 | INFO     | [job] control thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:36,467 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:36,638 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 13:07:41] 2026-01-16 13:06:36,779 | INFO     | [job] job monitor thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:36,801 | INFO     | all payload control threads have been joined
[2026-01-16 13:07:41] 2026-01-16 13:06:37,025 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:37,089 | INFO     | [data] copytool_in thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:37,090 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:37,092 | INFO     | [job] validate thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:37,185 | INFO     | [payload] failed_post thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:37,399 | INFO     | [data] control thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:37,643 | INFO     | [job] queue monitor thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:37,697 | INFO     | [payload] validate_post thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:37,756 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:37,806 | INFO     | [payload] control thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:38,002 | INFO     | [data] copytool_out thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:06:39,332 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 13:07:41] 2026-01-16 13:07:05,949 | INFO     | PID=73111 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-16 13:07:41] 2026-01-16 13:07:05,950 | INFO     | .. there are 22 such processes running
[2026-01-16 13:07:41] 2026-01-16 13:07:05,950 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 13:07:41] 2026-01-16 13:07:05,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 13:07:41] 2026-01-16 13:07:05,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 13:07:41] 2026-01-16 13:07:34,179 | INFO     | [monitor] cgroup control has ended
[2026-01-16 13:07:41] 2026-01-16 13:07:35,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123872045905728)>', '<ExcThread(monitor, started 123871277606656)>']
[2026-01-16 13:07:41] 2026-01-16 13:07:36,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 13:07:41] 2026-01-16 13:07:36,106 | INFO     | [monitor] control thread has ended
[2026-01-16 13:07:41] 2026-01-16 13:07:40,357 | INFO     | all workflow threads have been joined
[2026-01-16 13:07:41] 2026-01-16 13:07:40,357 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 13:07:41] 2026-01-16 13:07:40,358 | INFO     | traces error code: 0
[2026-01-16 13:07:41] 2026-01-16 13:07:40,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 13:07:41] 2026-01-16 13:07:40,595 [wrapper] ==== pilot stdout END ====
[2026-01-16 13:07:41] 2026-01-16 13:07:40,606 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 13:07:41] 2026-01-16 13:07:40,613 [wrapper] pilotpid: 73111
[2026-01-16 13:07:41] 2026-01-16 13:07:40,621 [wrapper] Pilot exit status: 0
[2026-01-16 13:07:41] 2026-01-16 13:07:40,655 [wrapper] pandaids: 6970289702
[2026-01-16 13:07:41] 2026-01-16 13:07:40,806 [wrapper] cleanup supervisor_pilot  553020 73112
[2026-01-16 13:07:41] 2026-01-16 13:07:40,815 [wrapper] Test setup, not cleaning
[2026-01-16 13:07:41] 2026-01-16 13:07:40,825 [wrapper] apfmon messages muted
[2026-01-16 13:07:41] 2026-01-16 13:07:40,834 [wrapper] ==== wrapper stdout END ====
[2026-01-16 13:07:41] 2026-01-16 13:07:40,845 [wrapper] ==== wrapper stderr END ====
[2026-01-16 13:07:41]  *** Error codes and diagnostics ***
[2026-01-16 13:07:41]     "exeErrorCode": 0,
[2026-01-16 13:07:41]     "exeErrorDiag": "",
[2026-01-16 13:07:41]     "pilotErrorCode": 0,
[2026-01-16 13:07:41]     "pilotErrorDiag": "",
[2026-01-16 13:07:41]  *** Listing of results directory ***
[2026-01-16 13:07:41] total 735096
[2026-01-16 13:07:41] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:50 queuedata.json
[2026-01-16 13:07:41] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:50 pilot3.tar.gz
[2026-01-16 13:07:41] -rwx------ 1 boinc boinc     36322 Jan 15 04:51 runpilot2-wrapper.sh
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc       100 Jan 16 11:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 13:07:41] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 11:32 run_atlas
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc       105 Jan 16 11:32 job.xml
[2026-01-16 13:07:41] -rw-r--r-- 2 boinc boinc 594333589 Jan 16 11:32 EVNT.32794306._001773.pool.root.1
[2026-01-16 13:07:41] drwxrwx--x 2 boinc boinc      4096 Jan 16 11:32 shared
[2026-01-16 13:07:41] -rw-r--r-- 2 boinc boinc    592404 Jan 16 11:32 input.tar.gz
[2026-01-16 13:07:41] -rw-r--r-- 2 boinc boinc     15847 Jan 16 11:32 start_atlas.sh
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 11:32 init_data.xml
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc         0 Jan 16 11:32 boinc_setup_complete
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc         0 Jan 16 11:32 boinc_lockfile
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc      2508 Jan 16 11:32 pandaJob.out
[2026-01-16 13:07:41] -rw------- 1 boinc boinc   1004075 Jan 16 11:33 agis_schedconf.cvmfs.json
[2026-01-16 13:07:41] -rw------- 1 boinc boinc   1516246 Jan 16 11:33 agis_ddmendpoints.agis.ALL.json
[2026-01-16 13:07:41] drwx------ 5 boinc boinc      4096 Jan 16 11:33 pilot3
[2026-01-16 13:07:41] -rw------- 1 boinc boinc 152154003 Jan 16 13:05 HITS.48215263._045519.pool.root.1
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc       531 Jan 16 13:05 boinc_task_state.xml
[2026-01-16 13:07:41] -rw------- 1 boinc boinc      1021 Jan 16 13:06 memory_monitor_summary.json
[2026-01-16 13:07:41] -rw------- 1 boinc boinc    385967 Jan 16 13:06 log.48215263._045519.job.log.tgz.1
[2026-01-16 13:07:41] -rw------- 1 boinc boinc        95 Jan 16 13:06 pilot_heartbeat.json
[2026-01-16 13:07:41] -rw------- 1 boinc boinc      7729 Jan 16 13:06 heartbeat.json
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 13:07 boinc_mmap_file
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc        27 Jan 16 13:07 wrapper_checkpoint.txt
[2026-01-16 13:07:41] -rw------- 1 boinc boinc      4846 Jan 16 13:07 pilotlog.txt
[2026-01-16 13:07:41] -rw------- 1 boinc boinc    777446 Jan 16 13:07 log.48215263._045519.job.log.1
[2026-01-16 13:07:41] -rw------- 1 boinc boinc       357 Jan 16 13:07 output.list
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc       620 Jan 16 13:07 runtime_log
[2026-01-16 13:07:41] -rw------- 1 boinc boinc   1177600 Jan 16 13:07 result.tar.gz
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 13:07 runtime_log.err
[2026-01-16 13:07:41] -rw------- 1 boinc boinc       651 Jan 16 13:07 YvxKDmyVU08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiynKDmh4OK4m.diag
[2026-01-16 13:07:41] -rw-rw-r-- 1 boinc boinc     22165 Jan 16 13:07 stderr.txt
[2026-01-16 13:07:41] HITS file was successfully produced:
[2026-01-16 13:07:41] -rw------- 1 boinc boinc 152154003 Jan 16 13:05 shared/HITS.pool.root.1
[2026-01-16 13:07:41]  *** Contents of shared directory: ***
[2026-01-16 13:07:41] total 730748
[2026-01-16 13:07:41] -rw-r--r-- 2 boinc boinc 594333589 Jan 16 11:32 ATLAS.root_0
[2026-01-16 13:07:41] -rw-r--r-- 2 boinc boinc    592404 Jan 16 11:32 input.tar.gz
[2026-01-16 13:07:41] -rw-r--r-- 2 boinc boinc     15847 Jan 16 11:32 start_atlas.sh
[2026-01-16 13:07:41] -rw------- 1 boinc boinc 152154003 Jan 16 13:05 HITS.pool.root.1
[2026-01-16 13:07:41] -rw------- 1 boinc boinc   1177600 Jan 16 13:07 result.tar.gz
13:07:42 (68911): run_atlas exited; CPU time 30576.098064
13:07:42 (68911): called boinc_finish(0)

</stderr_txt>
]]>

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