Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:08:50 (625050): wrapper (7.7.26015): starting
17:08:50 (625050): wrapper: running run_atlas (--nthreads 2)
[2026-01-15 17:08:50] Arguments: --nthreads 2
[2026-01-15 17:08:50] Threads: 2
[2026-01-15 17:08:50] Checking for CVMFS
[2026-01-15 17:08:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 17:08:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 17:08:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 17:08:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 17:08:50] 2.9.2.0 4141607 2335 57916 155177 2 57 20130081 36864000 0 130560 0 1844932 99.989 96350 3882 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 17:08:50] CVMFS is ok
[2026-01-15 17:08:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 17:08:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 17:08:50] Further information can be found at the LHC@home message board.
[2026-01-15 17:08:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 17:08:50] Checking for apptainer binary...
[2026-01-15 17:08:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 17:08:50] Running /usr/bin/apptainer --version
[2026-01-15 17:08:50] apptainer version 1.4.1-1.1
[2026-01-15 17:08:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 17:08:51] thA337
[2026-01-15 17:08:51] apptainer works
[2026-01-15 17:08:51] Set ATHENA_PROC_NUMBER=2
[2026-01-15 17:08:51] Set ATHENA_CORE_NUMBER=2
[2026-01-15 17:08:51] Starting ATLAS job with PandaID=6970287962
[2026-01-15 17:08:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 18:33:15]  *** The last 200 lines of the pilot log: ***
[2026-01-15 18:33:15] 2026-01-15 17:32:12,458 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 18:33:15] 2026-01-15 17:32:12,458 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 18:33:15] 2026-01-15 17:32:12,458 | INFO     | will abort loop
[2026-01-15 18:33:15] 2026-01-15 17:32:12,621 | INFO     | all data control threads have been joined
[2026-01-15 18:33:15] 2026-01-15 17:32:12,906 | INFO     | all payload control threads have been joined
[2026-01-15 18:33:15] 2026-01-15 17:32:13,429 | INFO     | [job] retrieve thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:13,430 | INFO     | [job] queue monitor thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:13,459 | INFO     | [job] job monitor thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:13,605 | INFO     | all job control threads have been joined
[2026-01-15 18:33:15] 2026-01-15 17:32:13,627 | INFO     | [data] control thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:13,698 | INFO     | [payload] validate_post thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:13,760 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:13,912 | INFO     | [payload] control thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:14,430 | INFO     | [data] copytool_out thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:14,466 | INFO     | [data] copytool_in thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:14,611 | INFO     | [job] control thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:14,624 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:14,758 | INFO     | [job] validate thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:14,794 | INFO     | [payload] failed_post thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:14,859 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:16,431 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:22,761 | INFO     | job.realtimelogging is not enabled
[2026-01-15 18:33:15] 2026-01-15 17:32:23,767 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 18:33:15] 2026-01-15 17:32:43,363 | INFO     | PID=628758 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 18:33:15] 2026-01-15 17:32:43,363 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 18:33:15] 2026-01-15 17:32:43,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 18:33:15] 2026-01-15 17:32:43,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 18:33:15] 2026-01-15 17:33:10,405 | INFO     | [monitor] cgroup control has ended
[2026-01-15 18:33:15] 2026-01-15 17:33:10,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470997337920)>', '<ExcThread(monitor, started 140470495721216)>']
[2026-01-15 18:33:15] 2026-01-15 17:33:10,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 18:33:15] 2026-01-15 17:33:10,503 | INFO     | [monitor] control thread has ended
[2026-01-15 18:33:15] 2026-01-15 17:33:15,481 | INFO     | all workflow threads have been joined
[2026-01-15 18:33:15] 2026-01-15 17:33:15,484 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 18:33:15] 2026-01-15 17:33:15,485 | INFO     | traces error code: 0
[2026-01-15 18:33:15] 2026-01-15 17:33:15,485 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 18:33:15] 2026-01-15 17:33:15,528 [wrapper] ==== pilot stdout END ====
[2026-01-15 18:33:15] 2026-01-15 17:33:15,530 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 18:33:15] 2026-01-15 17:33:15,532 [wrapper] pilotpid: 628758
[2026-01-15 18:33:15] 2026-01-15 17:33:15,535 [wrapper] Pilot exit status: 0
[2026-01-15 18:33:15] 2026-01-15 17:33:15,540 [wrapper] pandaids: 6970287962
[2026-01-15 18:33:15] 2026-01-15 17:33:15,554 [wrapper] cleanup supervisor_pilot  646585 628759
[2026-01-15 18:33:15] 2026-01-15 17:33:15,556 [wrapper] Test setup, not cleaning
[2026-01-15 18:33:15] 2026-01-15 17:33:15,558 [wrapper] apfmon messages muted
[2026-01-15 18:33:15] 2026-01-15 17:33:15,560 [wrapper] ==== wrapper stdout END ====
[2026-01-15 18:33:15] 2026-01-15 17:33:15,562 [wrapper] ==== wrapper stderr END ====
[2026-01-15 18:33:15]  *** Error codes and diagnostics ***
[2026-01-15 18:33:15]     "exeErrorCode": 0,
[2026-01-15 18:33:15]     "exeErrorDiag": "",
[2026-01-15 18:33:15]     "pilotErrorCode": 0,
[2026-01-15 18:33:15]     "pilotErrorDiag": "",
[2026-01-15 18:33:15]  *** Listing of results directory ***
[2026-01-15 18:33:15] total 733868
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:00 pilot3.tar.gz
[2026-01-15 18:33:15] -rwx------ 1 boinc boinc     36322 Jan 15 04:04 runpilot2-wrapper.sh
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:10 queuedata.json
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc       100 Jan 15 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 18:33:15] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 17:08 run_atlas
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc       105 Jan 15 17:08 job.xml
[2026-01-15 18:33:15] -rw-r--r-- 2 boinc boinc 592481268 Jan 15 17:08 EVNT.32794306._001737.pool.root.1
[2026-01-15 18:33:15] -rw-r--r-- 2 boinc boinc    592400 Jan 15 17:08 input.tar.gz
[2026-01-15 18:33:15] -rw-r--r-- 2 boinc boinc     15847 Jan 15 17:08 start_atlas.sh
[2026-01-15 18:33:15] drwxrwx--x 2 boinc boinc      4096 Jan 15 17:08 shared
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc         0 Jan 15 17:08 boinc_setup_complete
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc      6206 Jan 15 17:08 init_data.xml
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc         0 Jan 15 17:08 boinc_lockfile
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc      2508 Jan 15 17:08 pandaJob.out
[2026-01-15 18:33:15] -rw------- 1 boinc boinc   1004083 Jan 15 17:09 agis_schedconf.cvmfs.json
[2026-01-15 18:33:15] -rw------- 1 boinc boinc   1516246 Jan 15 17:09 agis_ddmendpoints.agis.ALL.json
[2026-01-15 18:33:15] drwx------ 5 boinc boinc      4096 Jan 15 17:09 pilot3
[2026-01-15 18:33:15] -rw------- 1 boinc boinc 153158477 Jan 15 18:31 HITS.48215263._044619.pool.root.1
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc       529 Jan 15 18:31 boinc_task_state.xml
[2026-01-15 18:33:15] -rw------- 1 boinc boinc      1010 Jan 15 18:31 memory_monitor_summary.json
[2026-01-15 18:33:15] -rw------- 1 boinc boinc    231245 Jan 15 18:31 log.48215263._044619.job.log.tgz.1
[2026-01-15 18:33:15] -rw------- 1 boinc boinc      7739 Jan 15 18:32 heartbeat.json
[2026-01-15 18:33:15] -rw------- 1 boinc boinc        95 Jan 15 18:32 pilot_heartbeat.json
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc      8192 Jan 15 18:32 boinc_mmap_file
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc        26 Jan 15 18:32 wrapper_checkpoint.txt
[2026-01-15 18:33:15] -rw------- 1 boinc boinc      5009 Jan 15 18:33 pilotlog.txt
[2026-01-15 18:33:15] -rw------- 1 boinc boinc    732664 Jan 15 18:33 log.48215263._044619.job.log.1
[2026-01-15 18:33:15] -rw------- 1 boinc boinc       357 Jan 15 18:33 output.list
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc       620 Jan 15 18:33 runtime_log
[2026-01-15 18:33:15] -rw------- 1 boinc boinc    983040 Jan 15 18:33 result.tar.gz
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc      8897 Jan 15 18:33 runtime_log.err
[2026-01-15 18:33:15] -rw------- 1 boinc boinc       656 Jan 15 18:33 NJANDmLqS08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf0tKDmJQfxum.diag
[2026-01-15 18:33:15] -rw-r--r-- 1 boinc boinc      7001 Jan 15 18:33 stderr.txt
[2026-01-15 18:33:15] HITS file was successfully produced:
[2026-01-15 18:33:15] -rw------- 1 boinc boinc 153158477 Jan 15 18:31 shared/HITS.pool.root.1
[2026-01-15 18:33:15]  *** Contents of shared directory: ***
[2026-01-15 18:33:15] total 729732
[2026-01-15 18:33:15] -rw-r--r-- 2 boinc boinc 592481268 Jan 15 17:08 ATLAS.root_0
[2026-01-15 18:33:15] -rw-r--r-- 2 boinc boinc    592400 Jan 15 17:08 input.tar.gz
[2026-01-15 18:33:15] -rw-r--r-- 2 boinc boinc     15847 Jan 15 17:08 start_atlas.sh
[2026-01-15 18:33:15] -rw------- 1 boinc boinc 153158477 Jan 15 18:31 HITS.pool.root.1
[2026-01-15 18:33:15] -rw------- 1 boinc boinc    983040 Jan 15 18:33 result.tar.gz
18:33:17 (625050): run_atlas exited; CPU time 9563.266739
18:33:17 (625050): called boinc_finish(0)

</stderr_txt>
]]>

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