Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:42:56 (3798172): wrapper (7.7.26015): starting
12:42:56 (3798172): wrapper: running run_atlas (--nthreads 3)
[2026-01-15 12:42:56] Arguments: --nthreads 3
[2026-01-15 12:42:56] Threads: 3
[2026-01-15 12:42:56] Checking for CVMFS
[2026-01-15 12:42:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 12:42:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 12:42:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 12:42:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 12:42:57] 2.9.2.0 2866369 2342 81380 155167 3 57 23952258 36864000 0 130560 0 2540748 99.992 96695 3545 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 12:42:57] CVMFS is ok
[2026-01-15 12:42:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 12:42:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 12:42:57] Further information can be found at the LHC@home message board.
[2026-01-15 12:42:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 12:42:57] Checking for apptainer binary...
[2026-01-15 12:42:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 12:42:57] Running /usr/bin/apptainer --version
[2026-01-15 12:42:57] apptainer version 1.4.1-1.1
[2026-01-15 12:42:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 12:42:57] magicA161a
[2026-01-15 12:42:57] apptainer works
[2026-01-15 12:42:57] Set ATHENA_PROC_NUMBER=3
[2026-01-15 12:42:57] Set ATHENA_CORE_NUMBER=3
[2026-01-15 12:42:57] Starting ATLAS job with PandaID=6970286514
[2026-01-15 12:42:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 13:36:13]  *** The last 200 lines of the pilot log: ***
[2026-01-15 13:36:13] 2026-01-15 12:35:42,327 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 13:36:13] 2026-01-15 12:35:42,327 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 13:36:13] 2026-01-15 12:35:42,329 | INFO     | did not find any defunct processes belonging to 3808331
[2026-01-15 13:36:13] 2026-01-15 12:35:42,330 | INFO     | did not find any defunct processes belonging to 3808331
[2026-01-15 13:36:13] 2026-01-15 12:35:42,330 | INFO     | ready for new job
[2026-01-15 13:36:13] 2026-01-15 12:35:42,330 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 13:36:13] 2026-01-15 12:35:42,330 | INFO     | ***************************************
[2026-01-15 13:36:13] 2026-01-15 12:35:42,330 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 13:36:13] 2026-01-15 12:35:42,330 | INFO     | ***************************************
[2026-01-15 13:36:13] 2026-01-15 12:35:42,331 | INFO     | 
[2026-01-15 13:36:13] 2026-01-15 12:35:42,331 | INFO     | architecture information:
[2026-01-15 13:36:13] 2026-01-15 12:35:42,331 | INFO     | executing command: cat /etc/os-release
[2026-01-15 13:36:13] 2026-01-15 12:35:42,339 | INFO     | cat /etc/os-release:
[2026-01-15 13:36:13] NAME="CentOS Linux"
[2026-01-15 13:36:13] VERSION="7 (Core)"
[2026-01-15 13:36:13] ID="centos"
[2026-01-15 13:36:13] ID_LIKE="rhel fedora"
[2026-01-15 13:36:13] VERSION_ID="7"
[2026-01-15 13:36:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 13:36:13] ANSI_COLOR="0;31"
[2026-01-15 13:36:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 13:36:13] HOME_URL="https://www.centos.org/"
[2026-01-15 13:36:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 13:36:13] 
[2026-01-15 13:36:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 13:36:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 13:36:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 13:36:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 13:36:13] 
[2026-01-15 13:36:13] 2026-01-15 12:35:42,339 | INFO     | ***************************************
[2026-01-15 13:36:13] 2026-01-15 12:35:42,842 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 13:36:13] 2026-01-15 12:35:42,855 | INFO     | sufficient remaining disk space (380682371072 B)
[2026-01-15 13:36:13] 2026-01-15 12:35:42,855 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 13:36:13] 2026-01-15 12:35:42,856 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 13:36:13] 2026-01-15 12:35:42,856 | INFO     | update_server=False
[2026-01-15 13:36:13] 2026-01-15 12:35:42,856 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 13:36:13] 2026-01-15 12:35:42,856 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 13:36:13] 2026-01-15 12:35:42,856 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 13:36:13] 2026-01-15 12:35:42,905 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 13:36:13] 2026-01-15 12:35:42,973 | INFO     | all data control threads have been joined
[2026-01-15 13:36:13] 2026-01-15 12:35:43,099 | INFO     | all job control threads have been joined
[2026-01-15 13:36:13] 2026-01-15 12:35:43,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 13:36:13] 2026-01-15 12:35:43,498 | INFO     | aborting loop
[2026-01-15 13:36:13] 2026-01-15 12:35:43,861 | INFO     | [job] retrieve thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:43,862 | INFO     | [job] queue monitor thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:43,866 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:43,979 | INFO     | [data] control thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:44,017 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:44,094 | INFO     | all payload control threads have been joined
[2026-01-15 13:36:13] 2026-01-15 12:35:44,105 | INFO     | [job] control thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:44,503 | INFO     | [job] job monitor thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:44,527 | INFO     | [payload] failed_post thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:44,750 | INFO     | [data] copytool_in thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:44,911 | INFO     | [data] copytool_out thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:45,054 | INFO     | [payload] validate_post thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:45,099 | INFO     | [payload] control thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:45,248 | INFO     | [job] validate thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:45,335 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:46,862 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:35:53,153 | INFO     | job.realtimelogging is not enabled
[2026-01-15 13:36:13] 2026-01-15 12:35:54,158 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 13:36:13] 2026-01-15 12:36:06,431 | INFO     | [monitor] cgroup control has ended
[2026-01-15 13:36:13] 2026-01-15 12:36:08,429 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520744253248)>', '<ExcThread(monitor, started 140520470845184)>']
[2026-01-15 13:36:13] 2026-01-15 12:36:13,454 | INFO     | all workflow threads have been joined
[2026-01-15 13:36:13] 2026-01-15 12:36:13,454 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 13:36:13] 2026-01-15 12:36:13,454 | INFO     | traces error code: 0
[2026-01-15 13:36:13] 2026-01-15 12:36:13,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 13:36:13] 2026-01-15 12:36:13,592 | INFO     | PID=3801891 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 13:36:13] 2026-01-15 12:36:13,592 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 13:36:13] 2026-01-15 12:36:13,592 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 13:36:13] 2026-01-15 12:36:13,592 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 13:36:13] 2026-01-15 12:36:13,592 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 13:36:13] 2026-01-15 12:36:13,592 | INFO     | [monitor] control thread has ended
[2026-01-15 13:36:13] 2026-01-15 12:36:13,638 [wrapper] ==== pilot stdout END ====
[2026-01-15 13:36:13] 2026-01-15 12:36:13,640 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 13:36:13] 2026-01-15 12:36:13,643 [wrapper] pilotpid: 3801891
[2026-01-15 13:36:13] 2026-01-15 12:36:13,645 [wrapper] Pilot exit status: 0
[2026-01-15 13:36:13] 2026-01-15 12:36:13,652 [wrapper] pandaids: 6970286514
[2026-01-15 13:36:13] 2026-01-15 12:36:13,667 [wrapper] cleanup supervisor_pilot 3817524 3801892
[2026-01-15 13:36:13] 2026-01-15 12:36:13,670 [wrapper] Test setup, not cleaning
[2026-01-15 13:36:13] 2026-01-15 12:36:13,672 [wrapper] apfmon messages muted
[2026-01-15 13:36:13] 2026-01-15 12:36:13,674 [wrapper] ==== wrapper stdout END ====
[2026-01-15 13:36:13] 2026-01-15 12:36:13,676 [wrapper] ==== wrapper stderr END ====
[2026-01-15 13:36:13]  *** Error codes and diagnostics ***
[2026-01-15 13:36:13]     "exeErrorCode": 0,
[2026-01-15 13:36:13]     "exeErrorDiag": "",
[2026-01-15 13:36:13]     "pilotErrorCode": 0,
[2026-01-15 13:36:13]     "pilotErrorDiag": "",
[2026-01-15 13:36:13]  *** Listing of results directory ***
[2026-01-15 13:36:13] total 735772
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:00 pilot3.tar.gz
[2026-01-15 13:36:13] -rwx------ 1 boinc boinc     36322 Jan 15 04:02 runpilot2-wrapper.sh
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:05 queuedata.json
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc       100 Jan 15 12:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 13:36:13] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 12:42 run_atlas
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc       105 Jan 15 12:42 job.xml
[2026-01-15 13:36:13] -rw-r--r-- 2 boinc boinc 599312951 Jan 15 12:42 EVNT.32794306._000962.pool.root.1
[2026-01-15 13:36:13] -rw-r--r-- 2 boinc boinc    592407 Jan 15 12:42 input.tar.gz
[2026-01-15 13:36:13] -rw-r--r-- 2 boinc boinc     15847 Jan 15 12:42 start_atlas.sh
[2026-01-15 13:36:13] drwxrwx--x 2 boinc boinc      4096 Jan 15 12:42 shared
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc         0 Jan 15 12:42 boinc_setup_complete
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc      6448 Jan 15 12:42 init_data.xml
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc         0 Jan 15 12:42 boinc_lockfile
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc      2507 Jan 15 12:42 pandaJob.out
[2026-01-15 13:36:13] -rw------- 1 boinc boinc   1004126 Jan 15 12:43 agis_schedconf.cvmfs.json
[2026-01-15 13:36:13] -rw------- 1 boinc boinc   1516246 Jan 15 12:43 agis_ddmendpoints.agis.ALL.json
[2026-01-15 13:36:13] drwx------ 5 boinc boinc      4096 Jan 15 12:43 pilot3
[2026-01-15 13:36:13] -rw------- 1 boinc boinc        95 Jan 15 13:35 pilot_heartbeat.json
[2026-01-15 13:36:13] -rw------- 1 boinc boinc 148743401 Jan 15 13:35 HITS.48215263._044112.pool.root.1
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc       529 Jan 15 13:35 boinc_task_state.xml
[2026-01-15 13:36:13] -rw------- 1 boinc boinc      1009 Jan 15 13:35 memory_monitor_summary.json
[2026-01-15 13:36:13] -rw------- 1 boinc boinc    241672 Jan 15 13:35 log.48215263._044112.job.log.tgz.1
[2026-01-15 13:36:13] -rw------- 1 boinc boinc      7758 Jan 15 13:35 heartbeat.json
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc        26 Jan 15 13:35 wrapper_checkpoint.txt
[2026-01-15 13:36:13] -rw------- 1 boinc boinc       747 Jan 15 13:36 pilotlog.txt
[2026-01-15 13:36:13] -rw------- 1 boinc boinc    483585 Jan 15 13:36 log.48215263._044112.job.log.1
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc      8192 Jan 15 13:36 boinc_mmap_file
[2026-01-15 13:36:13] -rw------- 1 boinc boinc       357 Jan 15 13:36 output.list
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc       620 Jan 15 13:36 runtime_log
[2026-01-15 13:36:13] -rw------- 1 boinc boinc    747520 Jan 15 13:36 result.tar.gz
[2026-01-15 13:36:13] -rw------- 1 boinc boinc       660 Jan 15 13:36 xuhMDmNoS08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOqtKDmDxqD8m.diag
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc      8917 Jan 15 13:36 runtime_log.err
[2026-01-15 13:36:13] -rw-r--r-- 1 boinc boinc     10067 Jan 15 13:36 stderr.txt
[2026-01-15 13:36:13] HITS file was successfully produced:
[2026-01-15 13:36:13] -rw------- 1 boinc boinc 148743401 Jan 15 13:35 shared/HITS.pool.root.1
[2026-01-15 13:36:13]  *** Contents of shared directory: ***
[2026-01-15 13:36:13] total 731864
[2026-01-15 13:36:13] -rw-r--r-- 2 boinc boinc 599312951 Jan 15 12:42 ATLAS.root_0
[2026-01-15 13:36:13] -rw-r--r-- 2 boinc boinc    592407 Jan 15 12:42 input.tar.gz
[2026-01-15 13:36:13] -rw-r--r-- 2 boinc boinc     15847 Jan 15 12:42 start_atlas.sh
[2026-01-15 13:36:13] -rw------- 1 boinc boinc 148743401 Jan 15 13:35 HITS.pool.root.1
[2026-01-15 13:36:13] -rw------- 1 boinc boinc    747520 Jan 15 13:36 result.tar.gz
13:36:35 (3798172): run_atlas exited; CPU time 8838.211941
13:36:35 (3798172): called boinc_finish(0)

</stderr_txt>
]]>

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