Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:19:24 (1356140): wrapper (7.7.26015): starting
14:19:24 (1356140): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 14:19:24] Arguments: --nthreads 4
[2026-01-15 14:19:24] Threads: 4
[2026-01-15 14:19:24] Checking for CVMFS
[2026-01-15 14:19:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 14:19:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 14:19:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 14:19:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 14:19:24] 2.9.2.0 313005 2228 97656 155174 3 56 21730029 36864000 0 130560 0 2805268 99.993 93305 18683 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 14:19:24] CVMFS is ok
[2026-01-15 14:19:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 14:19:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 14:19:24] Further information can be found at the LHC@home message board.
[2026-01-15 14:19:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 14:19:24] Checking for apptainer binary...
[2026-01-15 14:19:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 14:19:24] Running /usr/bin/apptainer --version
[2026-01-15 14:19:24] apptainer version 1.4.1-1.1
[2026-01-15 14:19:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 14:19:24] thA334
[2026-01-15 14:19:24] apptainer works
[2026-01-15 14:19:24] Set ATHENA_PROC_NUMBER=4
[2026-01-15 14:19:24] Set ATHENA_CORE_NUMBER=4
[2026-01-15 14:19:24] Starting ATLAS job with PandaID=6970192641
[2026-01-15 14:19:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 15:05:40]  *** The last 200 lines of the pilot log: ***
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | job 6970192641 has completed (purged errors)
[2026-01-15 15:05:40] 2026-01-15 14:05:06,656 | INFO     | overall cleanup function is called
[2026-01-15 15:05:40] 2026-01-15 14:05:07,663 | INFO     | --- collectZombieJob: --- 10, [1366500]
[2026-01-15 15:05:40] 2026-01-15 14:05:07,663 | INFO     | zombie collector waiting for pid 1366500
[2026-01-15 15:05:40] 2026-01-15 14:05:07,663 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 15:05:40] 2026-01-15 14:05:07,663 | INFO     | collected zombie processes
[2026-01-15 15:05:40] 2026-01-15 14:05:07,663 | INFO     | will attempt to kill all subprocesses of pid=1366500
[2026-01-15 15:05:40] 2026-01-15 14:05:07,708 | INFO     | process IDs to be killed: [1366500] (in reverse order)
[2026-01-15 15:05:40] 2026-01-15 14:05:07,737 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 15:05:40] 2026-01-15 14:05:07,737 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 15:05:40] 2026-01-15 14:05:07,739 | INFO     | did not find any defunct processes belonging to 1366500
[2026-01-15 15:05:40] 2026-01-15 14:05:07,740 | INFO     | did not find any defunct processes belonging to 1366500
[2026-01-15 15:05:40] 2026-01-15 14:05:07,740 | INFO     | ready for new job
[2026-01-15 15:05:40] 2026-01-15 14:05:07,740 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 15:05:40] 2026-01-15 14:05:07,741 | INFO     | ***************************************
[2026-01-15 15:05:40] 2026-01-15 14:05:07,741 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 15:05:40] 2026-01-15 14:05:07,741 | INFO     | ***************************************
[2026-01-15 15:05:40] 2026-01-15 14:05:07,741 | INFO     | 
[2026-01-15 15:05:40] 2026-01-15 14:05:07,741 | INFO     | architecture information:
[2026-01-15 15:05:40] 2026-01-15 14:05:07,742 | INFO     | executing command: cat /etc/os-release
[2026-01-15 15:05:40] 2026-01-15 14:05:07,754 | INFO     | cat /etc/os-release:
[2026-01-15 15:05:40] NAME="CentOS Linux"
[2026-01-15 15:05:40] VERSION="7 (Core)"
[2026-01-15 15:05:40] ID="centos"
[2026-01-15 15:05:40] ID_LIKE="rhel fedora"
[2026-01-15 15:05:40] VERSION_ID="7"
[2026-01-15 15:05:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 15:05:40] ANSI_COLOR="0;31"
[2026-01-15 15:05:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 15:05:40] HOME_URL="https://www.centos.org/"
[2026-01-15 15:05:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 15:05:40] 
[2026-01-15 15:05:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 15:05:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 15:05:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 15:05:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 15:05:40] 
[2026-01-15 15:05:40] 2026-01-15 14:05:07,755 | INFO     | ***************************************
[2026-01-15 15:05:40] 2026-01-15 14:05:08,258 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 15:05:40] 2026-01-15 14:05:08,272 | INFO     | sufficient remaining disk space (237243465728 B)
[2026-01-15 15:05:40] 2026-01-15 14:05:08,273 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 15:05:40] 2026-01-15 14:05:08,273 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 15:05:40] 2026-01-15 14:05:08,273 | INFO     | update_server=False
[2026-01-15 15:05:40] 2026-01-15 14:05:08,273 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 15:05:40] 2026-01-15 14:05:08,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 15:05:40] 2026-01-15 14:05:08,273 | INFO     | aborting loop
[2026-01-15 15:05:40] 2026-01-15 14:05:08,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 15:05:40] 2026-01-15 14:05:08,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 15:05:40] 2026-01-15 14:05:08,960 | INFO     | all payload control threads have been joined
[2026-01-15 15:05:40] 2026-01-15 14:05:09,045 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 15:05:40] 2026-01-15 14:05:09,278 | INFO     | [job] job monitor thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:09,279 | INFO     | [job] retrieve thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:09,279 | INFO     | [job] queue monitor thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:09,316 | INFO     | all data control threads have been joined
[2026-01-15 15:05:40] 2026-01-15 14:05:09,329 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:09,374 | INFO     | all job control threads have been joined
[2026-01-15 15:05:40] 2026-01-15 14:05:09,412 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:09,493 | INFO     | [payload] validate_post thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:09,966 | INFO     | [payload] control thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:10,321 | INFO     | [data] control thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:10,380 | INFO     | [job] control thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:10,401 | INFO     | [payload] failed_post thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:10,461 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:10,644 | INFO     | [job] validate thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:10,739 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:10,778 | INFO     | [data] copytool_in thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:11,051 | INFO     | [data] copytool_out thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:12,555 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 15:05:40] 2026-01-15 14:05:34,587 | INFO     | [monitor] cgroup control has ended
[2026-01-15 15:05:40] 2026-01-15 14:05:35,807 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140619200149312)>', '<ExcThread(monitor, started 140618403657472)>']
[2026-01-15 15:05:40] 2026-01-15 14:05:39,179 | INFO     | PID=1359926 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 15:05:40] 2026-01-15 14:05:39,179 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 15:05:40] 2026-01-15 14:05:39,179 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 15:05:40] 2026-01-15 14:05:39,179 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 15:05:40] 2026-01-15 14:05:39,179 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 15:05:40] 2026-01-15 14:05:39,179 | INFO     | [monitor] control thread has ended
[2026-01-15 15:05:40] 2026-01-15 14:05:40,833 | INFO     | all workflow threads have been joined
[2026-01-15 15:05:40] 2026-01-15 14:05:40,833 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 15:05:40] 2026-01-15 14:05:40,833 | INFO     | traces error code: 0
[2026-01-15 15:05:40] 2026-01-15 14:05:40,834 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 15:05:40] 2026-01-15 14:05:40,899 [wrapper] ==== pilot stdout END ====
[2026-01-15 15:05:40] 2026-01-15 14:05:40,903 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 15:05:40] 2026-01-15 14:05:40,906 [wrapper] pilotpid: 1359926
[2026-01-15 15:05:40] 2026-01-15 14:05:40,909 [wrapper] Pilot exit status: 0
[2026-01-15 15:05:40] 2026-01-15 14:05:40,920 [wrapper] pandaids: 6970192641
[2026-01-15 15:05:40] 2026-01-15 14:05:40,939 [wrapper] cleanup supervisor_pilot 1375834 1359927
[2026-01-15 15:05:40] 2026-01-15 14:05:40,942 [wrapper] Test setup, not cleaning
[2026-01-15 15:05:40] 2026-01-15 14:05:40,945 [wrapper] apfmon messages muted
[2026-01-15 15:05:40] 2026-01-15 14:05:40,948 [wrapper] ==== wrapper stdout END ====
[2026-01-15 15:05:40] 2026-01-15 14:05:40,952 [wrapper] ==== wrapper stderr END ====
[2026-01-15 15:05:40]  *** Error codes and diagnostics ***
[2026-01-15 15:05:40]     "exeErrorCode": 0,
[2026-01-15 15:05:40]     "exeErrorDiag": "",
[2026-01-15 15:05:40]     "pilotErrorCode": 0,
[2026-01-15 15:05:40]     "pilotErrorDiag": "",
[2026-01-15 15:05:40]  *** Listing of results directory ***
[2026-01-15 15:05:40] total 729036
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:00 pilot3.tar.gz
[2026-01-15 15:05:40] -rwx------ 1 boinc boinc     36322 Jan 15 04:04 runpilot2-wrapper.sh
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:05 queuedata.json
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc       100 Jan 15 14:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 15:05:40] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 14:19 run_atlas
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc       105 Jan 15 14:19 job.xml
[2026-01-15 15:05:40] -rw-r--r-- 2 boinc boinc 591527620 Jan 15 14:19 EVNT.32794306._001716.pool.root.1
[2026-01-15 15:05:40] -rw-r--r-- 2 boinc boinc    592398 Jan 15 14:19 input.tar.gz
[2026-01-15 15:05:40] -rw-r--r-- 2 boinc boinc     15847 Jan 15 14:19 start_atlas.sh
[2026-01-15 15:05:40] drwxrwx--x 2 boinc boinc      4096 Jan 15 14:19 shared
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc         0 Jan 15 14:19 boinc_setup_complete
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc      6369 Jan 15 14:19 init_data.xml
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc         0 Jan 15 14:19 boinc_lockfile
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc      2509 Jan 15 14:19 pandaJob.out
[2026-01-15 15:05:40] -rw------- 1 boinc boinc   1004248 Jan 15 14:19 agis_schedconf.cvmfs.json
[2026-01-15 15:05:40] -rw------- 1 boinc boinc   1516246 Jan 15 14:19 agis_ddmendpoints.agis.ALL.json
[2026-01-15 15:05:40] drwx------ 5 boinc boinc      4096 Jan 15 14:19 pilot3
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc       530 Jan 15 15:04 boinc_task_state.xml
[2026-01-15 15:05:40] -rw------- 1 boinc boinc 149753579 Jan 15 15:04 HITS.48215263._043082.pool.root.1
[2026-01-15 15:05:40] -rw------- 1 boinc boinc        95 Jan 15 15:04 pilot_heartbeat.json
[2026-01-15 15:05:40] -rw------- 1 boinc boinc      1015 Jan 15 15:04 memory_monitor_summary.json
[2026-01-15 15:05:40] -rw------- 1 boinc boinc    243123 Jan 15 15:05 log.48215263._043082.job.log.tgz.1
[2026-01-15 15:05:40] -rw------- 1 boinc boinc      7745 Jan 15 15:05 heartbeat.json
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc      8192 Jan 15 15:05 boinc_mmap_file
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc        27 Jan 15 15:05 wrapper_checkpoint.txt
[2026-01-15 15:05:40] -rw------- 1 boinc boinc      4752 Jan 15 15:05 pilotlog.txt
[2026-01-15 15:05:40] -rw------- 1 boinc boinc    425028 Jan 15 15:05 log.48215263._043082.job.log.1
[2026-01-15 15:05:40] -rw------- 1 boinc boinc       357 Jan 15 15:05 output.list
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc       620 Jan 15 15:05 runtime_log
[2026-01-15 15:05:40] -rw------- 1 boinc boinc    686080 Jan 15 15:05 result.tar.gz
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc      8897 Jan 15 15:05 runtime_log.err
[2026-01-15 15:05:40] -rw------- 1 boinc boinc       657 Jan 15 15:05 PLnLDmjpS08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTlnKDmzjEYFm.diag
[2026-01-15 15:05:40] -rw-r--r-- 1 boinc boinc     11933 Jan 15 15:05 stderr.txt
[2026-01-15 15:05:41] HITS file was successfully produced:
[2026-01-15 15:05:41] -rw------- 1 boinc boinc 149753579 Jan 15 15:04 shared/HITS.pool.root.1
[2026-01-15 15:05:41]  *** Contents of shared directory: ***
[2026-01-15 15:05:41] total 725184
[2026-01-15 15:05:41] -rw-r--r-- 2 boinc boinc 591527620 Jan 15 14:19 ATLAS.root_0
[2026-01-15 15:05:41] -rw-r--r-- 2 boinc boinc    592398 Jan 15 14:19 input.tar.gz
[2026-01-15 15:05:41] -rw-r--r-- 2 boinc boinc     15847 Jan 15 14:19 start_atlas.sh
[2026-01-15 15:05:41] -rw------- 1 boinc boinc 149753579 Jan 15 15:04 HITS.pool.root.1
[2026-01-15 15:05:41] -rw------- 1 boinc boinc    686080 Jan 15 15:05 result.tar.gz
15:05:42 (1356140): run_atlas exited; CPU time 10012.216658
15:05:42 (1356140): called boinc_finish(0)

</stderr_txt>
]]>

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