Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:55:52 (1242517): wrapper (7.7.26015): starting
05:55:52 (1242517): wrapper: running run_atlas (--nthreads 8)
[2026-01-15 05:55:52] Arguments: --nthreads 8
[2026-01-15 05:55:52] Threads: 8
[2026-01-15 05:55:52] Checking for CVMFS
[2026-01-15 05:55:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 05:55:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 05:55:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 05:55:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 05:55:53] 2.13.3.0 7405 31424 220800 155165 3 880 31223528 40960000 25225 16776704 0 126296153 99.723 97100555 36441 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-15 05:55:53] CVMFS is ok
[2026-01-15 05:55:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 05:55:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 05:55:53] Further information can be found at the LHC@home message board.
[2026-01-15 05:55:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 05:55:53] Checking for apptainer binary...
[2026-01-15 05:55:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 05:55:53] Running /usr/bin/apptainer --version
[2026-01-15 05:55:53] apptainer version 1.4.5-2.el9
[2026-01-15 05:55:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 05:55:53] c-212-3.aglt2.org
[2026-01-15 05:55:53] apptainer works
[2026-01-15 05:55:54] Set ATHENA_PROC_NUMBER=8
[2026-01-15 05:55:54] Set ATHENA_CORE_NUMBER=8
[2026-01-15 05:55:54] Starting ATLAS job with PandaID=6970069979
[2026-01-15 05:55:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 07:28:05]  *** The last 200 lines of the pilot log: ***
[2026-01-15 07:28:05] 2026-01-15 12:27:04,138 | INFO     | total number of processed events: 400 (read)
[2026-01-15 07:28:05] 2026-01-15 12:27:04,138 | INFO     | executing command: lscpu
[2026-01-15 07:28:05] 2026-01-15 12:27:04,200 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 07:28:05] 2026-01-15 12:27:05,372 | INFO     | time since job start (5445s) is within the limit (349056.0s)
[2026-01-15 07:28:05] 2026-01-15 12:27:05,634 | INFO     | job 6970069979 has state=finished
[2026-01-15 07:28:05] 2026-01-15 12:27:05,635 | INFO     | preparing for final server update for job 6970069979 in state='finished'
[2026-01-15 07:28:05] 2026-01-15 12:27:05,635 | INFO     | this job has now completed (state=finished)
[2026-01-15 07:28:05] 2026-01-15 12:27:05,635 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 07:28:05] 2026-01-15 12:27:05,635 | INFO     | log transfer has been attempted: DONE
[2026-01-15 07:28:05] 2026-01-15 12:27:05,636 | INFO     | job 6970069979 has finished - writing final server update
[2026-01-15 07:28:05] 2026-01-15 12:27:05,636 | INFO     | total number of processed events: 400 (read)
[2026-01-15 07:28:05] 2026-01-15 12:27:05,636 | INFO     | executing command: lscpu
[2026-01-15 07:28:05] 2026-01-15 12:27:07,378 | INFO     | time since job start (5447s) is within the limit (349056.0s)
[2026-01-15 07:28:05] 2026-01-15 12:27:09,384 | INFO     | time since job start (5449s) is within the limit (349056.0s)
[2026-01-15 07:28:05] 2026-01-15 12:27:10,279 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 07:28:05] 2026-01-15 12:27:10,309 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3089.2864166666664
[2026-01-15 07:28:05] 2026-01-15 12:27:10,355 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 07:28:05] 2026-01-15 12:27:10,356 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6970069979/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 07:28:05] 2026-01-15 12:27:10,364 | INFO     | extracted standard info from prmon json
[2026-01-15 07:28:05] 2026-01-15 12:27:10,364 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 07:28:05] 2026-01-15 12:27:10,365 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 07:28:05] 2026-01-15 12:27:10,365 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 07:28:05] 2026-01-15 12:27:10,365 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 07:28:05] 2026-01-15 12:27:10,368 | INFO     | fitting pss+swap vs Time
[2026-01-15 07:28:05] 2026-01-15 12:27:10,368 | INFO     | sum of square deviations: 170944065.51219532
[2026-01-15 07:28:05] 2026-01-15 12:27:10,369 | INFO     | sum of deviations: 286845037.8780488
[2026-01-15 07:28:05] 2026-01-15 12:27:10,369 | INFO     | mean x: 1768477402.609756
[2026-01-15 07:28:05] 2026-01-15 12:27:10,369 | INFO     | mean y: 2533485.4024390243
[2026-01-15 07:28:05] 2026-01-15 12:27:10,369 | INFO     | intersect: -2964980865.084791
[2026-01-15 07:28:05] 2026-01-15 12:27:10,369 | INFO     | chi2: 0.002872138545356815
[2026-01-15 07:28:05] 2026-01-15 12:27:10,370 | INFO     | current memory leak: 1.68 B/s (using 82 data points, chi2=0.00)
[2026-01-15 07:28:05] 2026-01-15 12:27:10,370 | INFO     | could have reported an average CPU frequency of 3113 MHz (6 samples)
[2026-01-15 07:28:05] 2026-01-15 12:27:11,391 | INFO     | time since job start (5451s) is within the limit (349056.0s)
[2026-01-15 07:28:05] 2026-01-15 12:27:12,873 | INFO     | monitor loop #344: job 0:6970069979 is in state 'finished'
[2026-01-15 07:28:05] 2026-01-15 12:27:12,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 07:28:05] 2026-01-15 12:27:13,398 | INFO     | time since job start (5453s) is within the limit (349056.0s)
[2026-01-15 07:28:05] 2026-01-15 12:27:15,016 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 07:28:05] 2026-01-15 12:27:15,022 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3089.3968229166676
[2026-01-15 07:28:05] 2026-01-15 12:27:15,037 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6970069979/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 07:28:05] 2026-01-15 12:27:15,037 | INFO     | extracted standard info from prmon json
[2026-01-15 07:28:05] 2026-01-15 12:27:15,038 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 07:28:05] 2026-01-15 12:27:15,038 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 07:28:05] 2026-01-15 12:27:15,038 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 07:28:05] 2026-01-15 12:27:15,038 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 07:28:05] 2026-01-15 12:27:15,040 | INFO     | fitting pss+swap vs Time
[2026-01-15 07:28:05] 2026-01-15 12:27:15,040 | INFO     | sum of square deviations: 170944065.51219532
[2026-01-15 07:28:05] 2026-01-15 12:27:15,040 | INFO     | sum of deviations: 286845037.8780488
[2026-01-15 07:28:05] 2026-01-15 12:27:15,040 | INFO     | mean x: 1768477402.609756
[2026-01-15 07:28:05] 2026-01-15 12:27:15,040 | INFO     | mean y: 2533485.4024390243
[2026-01-15 07:28:05] 2026-01-15 12:27:15,040 | INFO     | intersect: -2964980865.084791
[2026-01-15 07:28:05] 2026-01-15 12:27:15,041 | INFO     | chi2: 0.002872138545356815
[2026-01-15 07:28:05] 2026-01-15 12:27:15,041 | INFO     | current memory leak: 1.68 B/s (using 82 data points, chi2=0.00)
[2026-01-15 07:28:05] 2026-01-15 12:27:15,041 | INFO     | could have reported an average CPU frequency of 3110 MHz (7 samples)
[2026-01-15 07:28:05] 2026-01-15 12:27:15,041 | INFO     | ..............................
[2026-01-15 07:28:05] 2026-01-15 12:27:15,041 | INFO     | . Timing measurements:
[2026-01-15 07:28:05] 2026-01-15 12:27:15,041 | INFO     | . get job = 0 s
[2026-01-15 07:28:05] 2026-01-15 12:27:15,041 | INFO     | . initial setup = 2 s
[2026-01-15 07:28:05] 2026-01-15 12:27:15,041 | INFO     | . payload setup = 9 s
[2026-01-15 07:28:05] 2026-01-15 12:27:15,042 | INFO     | . stage-in = 0 s
[2026-01-15 07:28:05] 2026-01-15 12:27:15,042 | INFO     | . payload execution = 5397 s
[2026-01-15 07:28:05] 2026-01-15 12:27:15,042 | INFO     | . stage-out = 0 s
[2026-01-15 07:28:05] 2026-01-15 12:27:15,042 | INFO     | . log creation = 0 s
[2026-01-15 07:28:05] 2026-01-15 12:27:15,042 | INFO     | ..............................
[2026-01-15 07:28:05] 2026-01-15 12:27:15,128 | INFO     | 
[2026-01-15 07:28:05] 2026-01-15 12:27:15,130 | INFO     | job summary report
[2026-01-15 07:28:05] 2026-01-15 12:27:15,130 | INFO     | --------------------------------------------------
[2026-01-15 07:28:05] 2026-01-15 12:27:15,130 | INFO     | PanDA job id: 6970069979
[2026-01-15 07:28:05] 2026-01-15 12:27:15,146 | INFO     | task id: 48215263
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | errors: (none)
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | pilot state: finished 
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | transexitcode: 0
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | exeerrorcode: 0
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | exeerrordiag: 
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | exitcode: 0
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | exitmsg: OK
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | cpuconsumptiontime: 22284 s
[2026-01-15 07:28:05] 2026-01-15 12:27:15,147 | INFO     | nevents: 400
[2026-01-15 07:28:05] 2026-01-15 12:27:15,148 | INFO     | neventsw: 0
[2026-01-15 07:28:05] 2026-01-15 12:27:15,148 | INFO     | pid: 1277485
[2026-01-15 07:28:05] 2026-01-15 12:27:15,148 | INFO     | pgrp: 1277485
[2026-01-15 07:28:05] 2026-01-15 12:27:15,148 | INFO     | corecount: 8
[2026-01-15 07:28:05] 2026-01-15 12:27:15,148 | INFO     | event service: False
[2026-01-15 07:28:05] 2026-01-15 12:27:15,148 | INFO     | sizes: {0: 2283952, 11: 2284242, 22: 2284242, 5411: 2310699, 5412: 2310698, 5413: 2319752, 5414: 2319936, 5426: 2320154}
[2026-01-15 07:28:05] 2026-01-15 12:27:15,148 | INFO     | --------------------------------------------------
[2026-01-15 07:28:05] 2026-01-15 12:27:15,148 | INFO     | 
[2026-01-15 07:28:05] 2026-01-15 12:27:15,148 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-15 07:28:05] 2026-01-15 12:27:15,197 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,198 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,199 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,199 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,199 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,199 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,199 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 07:28:05] 2026-01-15 12:27:15,199 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,199 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 07:28:05] 2026-01-15 12:27:15,199 | INFO     | job 6970069979 has completed (purged errors)
[2026-01-15 07:28:05] 2026-01-15 12:27:15,199 | INFO     | overall cleanup function is called
[2026-01-15 07:28:05] 2026-01-15 12:27:16,221 | INFO     | --- collectZombieJob: --- 10, [1277485]
[2026-01-15 07:28:05] 2026-01-15 12:27:16,222 | INFO     | zombie collector waiting for pid 1277485
[2026-01-15 07:28:05] 2026-01-15 12:27:16,225 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 07:28:05] 2026-01-15 12:27:16,226 | INFO     | collected zombie processes
[2026-01-15 07:28:05] 2026-01-15 12:27:16,226 | INFO     | will attempt to kill all subprocesses of pid=1277485
[2026-01-15 07:28:05] 2026-01-15 12:27:16,911 | INFO     | process IDs to be killed: [1277485] (in reverse order)
[2026-01-15 07:28:05] 2026-01-15 12:27:17,072 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 07:28:05] 2026-01-15 12:27:17,073 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 07:28:05] 2026-01-15 12:27:17,124 | INFO     | did not find any defunct processes belonging to 1277485
[2026-01-15 07:28:05] 2026-01-15 12:27:17,142 | INFO     | did not find any defunct processes belonging to 1277485
[2026-01-15 07:28:05] 2026-01-15 12:27:17,143 | INFO     | ready for new job
[2026-01-15 07:28:05] 2026-01-15 12:27:17,143 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 07:28:05] 2026-01-15 12:27:17,146 | INFO     | ***************************************
[2026-01-15 07:28:05] 2026-01-15 12:27:17,146 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 07:28:05] 2026-01-15 12:27:17,146 | INFO     | ***************************************
[2026-01-15 07:28:05] 2026-01-15 12:27:17,146 | INFO     | 
[2026-01-15 07:28:05] 2026-01-15 12:27:17,151 | INFO     | architecture information:
[2026-01-15 07:28:05] 2026-01-15 12:27:17,152 | INFO     | executing command: cat /etc/os-release
[2026-01-15 07:28:05] 2026-01-15 12:27:17,180 | INFO     | cat /etc/os-release:
[2026-01-15 07:28:05] NAME="CentOS Linux"
[2026-01-15 07:28:05] VERSION="7 (Core)"
[2026-01-15 07:28:05] ID="centos"
[2026-01-15 07:28:05] ID_LIKE="rhel fedora"
[2026-01-15 07:28:05] VERSION_ID="7"
[2026-01-15 07:28:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 07:28:05] ANSI_COLOR="0;31"
[2026-01-15 07:28:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 07:28:05] HOME_URL="https://www.centos.org/"
[2026-01-15 07:28:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 07:28:05] 
[2026-01-15 07:28:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 07:28:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 07:28:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 07:28:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 07:28:05] 
[2026-01-15 07:28:05] 2026-01-15 12:27:17,180 | INFO     | ***************************************
[2026-01-15 07:28:05] 2026-01-15 12:27:17,685 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-15 07:28:05] 2026-01-15 12:27:17,711 | INFO     | sufficient remaining disk space (123351334912 B)
[2026-01-15 07:28:05] 2026-01-15 12:27:17,711 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 07:28:05] 2026-01-15 12:27:17,712 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 07:28:05] 2026-01-15 12:27:17,712 | INFO     | update_server=False
[2026-01-15 07:28:05] 2026-01-15 12:27:17,712 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 07:28:05] 2026-01-15 12:27:17,712 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 07:28:05] 2026-01-15 12:27:17,765 | INFO     | all payload control threads have been joined
[2026-01-15 07:28:05] 2026-01-15 12:27:17,886 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 07:28:05] 2026-01-15 12:27:17,887 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 07:28:05] 2026-01-15 12:27:17,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:28:05] 2026-01-15 12:27:17,887 | INFO     | will abort loop
[2026-01-15 07:28:05] 2026-01-15 12:27:17,946 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 07:28:05] 2026-01-15 12:27:18,330 | INFO     | all data control threads have been joined
[2026-01-15 07:28:05] 2026-01-15 12:27:18,717 | INFO     | [job] retrieve thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:18,770 | INFO     | [payload] control thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:18,891 | INFO     | [job] job monitor thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,155 | INFO     | all job control threads have been joined
[2026-01-15 07:28:05] 2026-01-15 12:27:19,308 | INFO     | [job] validate thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,310 | INFO     | [data] copytool_in thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,311 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,338 | INFO     | [data] control thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,344 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,358 | INFO     | [payload] failed_post thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,517 | INFO     | [payload] validate_post thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,718 | INFO     | [data] copytool_out thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,859 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:19,968 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:20,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:28:05] 2026-01-15 12:27:20,161 | INFO     | [job] control thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:21,155 | INFO     | [job] queue monitor thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:21,954 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 07:28:05] 2026-01-15 12:27:29,368 | INFO     | [monitor] cgroup control has ended
[2026-01-15 07:28:05] 2026-01-15 12:27:30,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140096976291648)>', '<ExcThread(monitor, started 140096615454464)>']
[2026-01-15 07:28:05] 2026-01-15 12:27:35,243 | INFO     | all workflow threads have been joined
[2026-01-15 07:28:05] 2026-01-15 12:27:35,244 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 07:28:05] 2026-01-15 12:27:35,244 | INFO     | traces error code: 0
[2026-01-15 07:28:05] 2026-01-15 12:27:35,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 07:28:05] 2026-01-15 12:27:46,966 | INFO     | PID=1253532 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 07:28:05] 2026-01-15 12:27:46,966 | INFO     | .. there are 23 such processes running
[2026-01-15 07:28:05] 2026-01-15 12:27:46,966 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 07:28:05] 2026-01-15 12:27:46,967 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 07:28:05] 2026-01-15 12:27:46,967 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 07:28:05] 2026-01-15 12:27:46,967 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 07:28:05] 2026-01-15 12:27:46,967 | INFO     | [monitor] control thread has ended
[2026-01-15 07:28:05] 2026-01-15 12:27:47,221 [wrapper] ==== pilot stdout END ====
[2026-01-15 07:28:05] 2026-01-15 12:27:47,230 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 07:28:05] 2026-01-15 12:27:47,233 [wrapper] pilotpid: 1253532
[2026-01-15 07:28:05] 2026-01-15 12:27:47,257 [wrapper] Pilot exit status: 0
[2026-01-15 07:28:05] 2026-01-15 12:27:47,279 [wrapper] pandaids: 6970069979
[2026-01-15 07:28:05] 2026-01-15 12:27:47,393 [wrapper] cleanup supervisor_pilot 1613084 1253533
[2026-01-15 07:28:05] 2026-01-15 12:27:47,396 [wrapper] Test setup, not cleaning
[2026-01-15 07:28:05] 2026-01-15 12:27:47,400 [wrapper] apfmon messages muted
[2026-01-15 07:28:05] 2026-01-15 12:27:47,403 [wrapper] ==== wrapper stdout END ====
[2026-01-15 07:28:05] 2026-01-15 12:27:47,418 [wrapper] ==== wrapper stderr END ====
[2026-01-15 07:28:05]  *** Error codes and diagnostics ***
[2026-01-15 07:28:05]     "exeErrorCode": 0,
[2026-01-15 07:28:05]     "exeErrorDiag": "",
[2026-01-15 07:28:05]     "pilotErrorCode": 0,
[2026-01-15 07:28:05]     "pilotErrorDiag": "",
[2026-01-15 07:28:05]  *** Listing of results directory ***
[2026-01-15 07:28:05] total 735836
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 22:00 pilot3.tar.gz
[2026-01-15 07:28:05] -rwx------. 1 boincer umatlas     36322 Jan 14 22:03 runpilot2-wrapper.sh
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 22:05 queuedata.json
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas       100 Jan 15 05:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 07:28:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 05:55 run_atlas
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas       105 Jan 15 05:55 job.xml
[2026-01-15 07:28:05] -rw-r--r--. 2 boincer umatlas 592271488 Jan 15 05:55 EVNT.32794306._001667.pool.root.1
[2026-01-15 07:28:05] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 05:55 start_atlas.sh
[2026-01-15 07:28:05] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 05:55 shared
[2026-01-15 07:28:05] -rw-r--r--. 2 boincer umatlas    592399 Jan 15 05:55 input.tar.gz
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas         0 Jan 15 05:55 boinc_lockfile
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas      2509 Jan 15 05:55 pandaJob.out
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas        57 Jan 15 05:55 setup.sh.local
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas   1007559 Jan 15 05:56 agis_schedconf.cvmfs.json
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas   1516246 Jan 15 05:56 agis_ddmendpoints.agis.ALL.json
[2026-01-15 07:28:05] drwx------. 5 boincer umatlas      4096 Jan 15 05:56 pilot3
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas      6956 Jan 15 07:19 init_data.xml
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas 155159147 Jan 15 07:25 HITS.48215263._041818.pool.root.1
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas       530 Jan 15 07:26 boinc_task_state.xml
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas      1042 Jan 15 07:26 memory_monitor_summary.json
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas    333860 Jan 15 07:27 log.48215263._041818.job.log.tgz.1
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas        95 Jan 15 07:27 pilot_heartbeat.json
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas      7770 Jan 15 07:27 heartbeat.json
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas       823 Jan 15 07:27 pilotlog.txt
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas    734895 Jan 15 07:27 log.48215263._041818.job.log.1
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas       357 Jan 15 07:27 output.list
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas       620 Jan 15 07:27 runtime_log
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas   1085440 Jan 15 07:27 result.tar.gz
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas       652 Jan 15 07:27 WD1KDmMpS08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxhnKDmp6udnm.diag
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas      9337 Jan 15 07:27 runtime_log.err
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas        27 Jan 15 07:27 wrapper_checkpoint.txt
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 07:28 boinc_mmap_file
[2026-01-15 07:28:05] -rw-r--r--. 1 boincer umatlas     21938 Jan 15 07:28 stderr.txt
[2026-01-15 07:28:05] HITS file was successfully produced:
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas 155159147 Jan 15 07:25 shared/HITS.pool.root.1
[2026-01-15 07:28:05]  *** Contents of shared directory: ***
[2026-01-15 07:28:05] total 731580
[2026-01-15 07:28:05] -rw-r--r--. 2 boincer umatlas 592271488 Jan 15 05:55 ATLAS.root_0
[2026-01-15 07:28:05] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 05:55 start_atlas.sh
[2026-01-15 07:28:05] -rw-r--r--. 2 boincer umatlas    592399 Jan 15 05:55 input.tar.gz
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas 155159147 Jan 15 07:25 HITS.pool.root.1
[2026-01-15 07:28:05] -rw-------. 1 boincer umatlas   1085440 Jan 15 07:27 result.tar.gz
07:28:06 (1242517): run_atlas exited; CPU time 22482.687682
07:28:06 (1242517): called boinc_finish(0)

</stderr_txt>
]]>

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