Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:41:09 (26010): wrapper (7.7.26015): starting
05:41:09 (26010): wrapper: running run_atlas (--nthreads 12)
[2026-01-15 05:41:09] Arguments: --nthreads 12
[2026-01-15 05:41:09] Threads: 12
[2026-01-15 05:41:09] Checking for CVMFS
[2026-01-15 05:41:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 05:41:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 05:41:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 05:41:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 05:41:10] 2.11.2.0 2924 359528 101224 155165 1 57 18508165 20275200 1 130560 4 154920174 99.949 22156925 16260 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-15 05:41:10] CVMFS is ok
[2026-01-15 05:41:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 05:41:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 05:41:10] Further information can be found at the LHC@home message board.
[2026-01-15 05:41:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 05:41:10] Checking for apptainer binary...
[2026-01-15 05:41:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 05:41:10] Running /usr/bin/apptainer --version
[2026-01-15 05:41:10] apptainer version 1.3.2-1.el7
[2026-01-15 05:41:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 05:41:11] c-205-28.aglt2.org
[2026-01-15 05:41:11] apptainer works
[2026-01-15 05:41:11] Set ATHENA_PROC_NUMBER=12
[2026-01-15 05:41:11] Set ATHENA_CORE_NUMBER=12
[2026-01-15 05:41:11] Starting ATLAS job with PandaID=6970395251
[2026-01-15 05:41:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 06:29:36]  *** The last 200 lines of the pilot log: ***
[2026-01-15 06:29:36]  lfn=log.48215263._047380.job.log.tgz.1
[2026-01-15 06:29:36]  mtime=0
[2026-01-15 06:29:36]  protocol_id=None
[2026-01-15 06:29:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-15 06:29:36]  replicas=None
[2026-01-15 06:29:36]  scope=mc23_13p6TeV
[2026-01-15 06:29:36]  status=None
[2026-01-15 06:29:36]  status_code=0
[2026-01-15 06:29:36]  storage_token=
[2026-01-15 06:29:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6970395251/log.48215263._047380.job.log.tgz.1
[2026-01-15 06:29:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/f7/log.48215263._047380.job.log.tgz.1
[2026-01-15 06:29:36]  workdir=None
[2026-01-15 06:29:36] ]
[2026-01-15 06:29:36] 2026-01-15 11:28:30,976 | INFO     | transferring file log.48215263._047380.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6970395251/log.48215263._047380.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 06:29:36] 2026-01-15 11:28:30,976 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6970395251/log.48215263._047380.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._047380.job
[2026-01-15 06:29:36] 2026-01-15 11:28:30,998 | INFO     | adding to output.list: log.48215263._047380.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/88/f7/log.48215263._047380.job.log.tg
[2026-01-15 06:29:36] 2026-01-15 11:28:30,999 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 06:29:36] 2026-01-15 11:28:30,999 | INFO     | summary of transferred files:
[2026-01-15 06:29:36] 2026-01-15 11:28:30,999 | INFO     |  -- lfn=log.48215263._047380.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 06:29:36] 2026-01-15 11:28:31,000 | INFO     | stage-out finished correctly
[2026-01-15 06:29:36] 2026-01-15 11:28:31,623 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 06:29:36] 2026-01-15 11:28:32,174 | INFO     | time since job start (2826s) is within the limit (349056.0s)
[2026-01-15 06:29:36] 2026-01-15 11:28:32,597 | INFO     | monitor loop #214: job 0:6970395251 is in state 'finished'
[2026-01-15 06:29:36] 2026-01-15 11:28:32,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 06:29:36] 2026-01-15 11:28:32,731 | INFO     | job 6970395251 has state=finished
[2026-01-15 06:29:36] 2026-01-15 11:28:32,731 | INFO     | preparing for final server update for job 6970395251 in state='finished'
[2026-01-15 06:29:36] 2026-01-15 11:28:32,732 | INFO     | this job has now completed (state=finished)
[2026-01-15 06:29:36] 2026-01-15 11:28:32,732 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 06:29:36] 2026-01-15 11:28:32,732 | INFO     | log transfer has been attempted: DONE
[2026-01-15 06:29:36] 2026-01-15 11:28:32,732 | INFO     | job 6970395251 has finished - writing final server update
[2026-01-15 06:29:36] 2026-01-15 11:28:32,733 | INFO     | total number of processed events: 400 (read)
[2026-01-15 06:29:36] 2026-01-15 11:28:32,734 | INFO     | executing command: lscpu
[2026-01-15 06:29:36] 2026-01-15 11:28:32,758 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 06:29:36] 2026-01-15 11:28:34,179 | INFO     | time since job start (2828s) is within the limit (349056.0s)
[2026-01-15 06:29:36] 2026-01-15 11:28:35,100 | INFO     | monitor loop #215: job 0:6970395251 is in state 'finished'
[2026-01-15 06:29:36] 2026-01-15 11:28:35,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 06:29:36] 2026-01-15 11:28:36,185 | INFO     | time since job start (2830s) is within the limit (349056.0s)
[2026-01-15 06:29:36] 2026-01-15 11:28:37,305 | INFO     | PID=29695 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 06:29:36] 2026-01-15 11:28:37,502 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-15 06:29:36] 2026-01-15 11:28:37,505 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2026-01-15 06:29:36] 2026-01-15 11:28:37,506 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6970395251/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 06:29:36] 2026-01-15 11:28:37,507 | INFO     | extracted standard info from prmon json
[2026-01-15 06:29:36] 2026-01-15 11:28:37,507 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 06:29:36] 2026-01-15 11:28:37,507 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 06:29:36] 2026-01-15 11:28:37,507 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 06:29:36] 2026-01-15 11:28:37,508 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 06:29:36] 2026-01-15 11:28:37,509 | INFO     | fitting pss+swap vs Time
[2026-01-15 06:29:36] 2026-01-15 11:28:37,509 | INFO     | sum of square deviations: 18381740.0
[2026-01-15 06:29:36] 2026-01-15 11:28:37,509 | INFO     | sum of deviations: -2719162108.0
[2026-01-15 06:29:36] 2026-01-15 11:28:37,509 | INFO     | mean x: 1768475179.0
[2026-01-15 06:29:36] 2026-01-15 11:28:37,509 | INFO     | mean y: 2899977.6153846155
[2026-01-15 06:29:36] 2026-01-15 11:28:37,509 | INFO     | intersect: 261608748807.77606
[2026-01-15 06:29:36] 2026-01-15 11:28:37,509 | INFO     | chi2: 0.03736546496831148
[2026-01-15 06:29:36] 2026-01-15 11:28:37,510 | INFO     | current memory leak: -147.93 B/s (using 39 data points, chi2=0.04)
[2026-01-15 06:29:36] 2026-01-15 11:28:37,510 | INFO     | could have reported an average CPU frequency of 1913 MHz (5 samples)
[2026-01-15 06:29:36] 2026-01-15 11:28:37,510 | INFO     | ..............................
[2026-01-15 06:29:36] 2026-01-15 11:28:37,510 | INFO     | . Timing measurements:
[2026-01-15 06:29:36] 2026-01-15 11:28:37,510 | INFO     | . get job = 0 s
[2026-01-15 06:29:36] 2026-01-15 11:28:37,510 | INFO     | . initial setup = 2 s
[2026-01-15 06:29:36] 2026-01-15 11:28:37,510 | INFO     | . payload setup = 7 s
[2026-01-15 06:29:36] 2026-01-15 11:28:37,511 | INFO     | . stage-in = 0 s
[2026-01-15 06:29:36] 2026-01-15 11:28:37,511 | INFO     | . payload execution = 2797 s
[2026-01-15 06:29:36] 2026-01-15 11:28:37,511 | INFO     | . stage-out = 0 s
[2026-01-15 06:29:36] 2026-01-15 11:28:37,511 | INFO     | . log creation = 0 s
[2026-01-15 06:29:36] 2026-01-15 11:28:37,511 | INFO     | ..............................
[2026-01-15 06:29:36] 2026-01-15 11:28:37,623 | INFO     | 
[2026-01-15 06:29:36] 2026-01-15 11:28:37,623 | INFO     | job summary report
[2026-01-15 06:29:36] 2026-01-15 11:28:37,623 | INFO     | --------------------------------------------------
[2026-01-15 06:29:36] 2026-01-15 11:28:37,623 | INFO     | PanDA job id: 6970395251
[2026-01-15 06:29:36] 2026-01-15 11:28:37,623 | INFO     | task id: 48215263
[2026-01-15 06:29:36] 2026-01-15 11:28:37,624 | INFO     | errors: (none)
[2026-01-15 06:29:36] 2026-01-15 11:28:37,624 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 06:29:36] 2026-01-15 11:28:37,624 | INFO     | pilot state: finished 
[2026-01-15 06:29:36] 2026-01-15 11:28:37,624 | INFO     | transexitcode: 0
[2026-01-15 06:29:36] 2026-01-15 11:28:37,624 | INFO     | exeerrorcode: 0
[2026-01-15 06:29:36] 2026-01-15 11:28:37,624 | INFO     | exeerrordiag: 
[2026-01-15 06:29:36] 2026-01-15 11:28:37,624 | INFO     | exitcode: 0
[2026-01-15 06:29:36] 2026-01-15 11:28:37,625 | INFO     | exitmsg: OK
[2026-01-15 06:29:36] 2026-01-15 11:28:37,625 | INFO     | cpuconsumptiontime: 29243 s
[2026-01-15 06:29:36] 2026-01-15 11:28:37,625 | INFO     | nevents: 400
[2026-01-15 06:29:36] 2026-01-15 11:28:37,625 | INFO     | neventsw: 0
[2026-01-15 06:29:36] 2026-01-15 11:28:37,625 | INFO     | pid: 3796
[2026-01-15 06:29:36] 2026-01-15 11:28:37,625 | INFO     | pgrp: 3796
[2026-01-15 06:29:36] 2026-01-15 11:28:37,626 | INFO     | corecount: 12
[2026-01-15 06:29:36] 2026-01-15 11:28:37,626 | INFO     | event service: False
[2026-01-15 06:29:36] 2026-01-15 11:28:37,626 | INFO     | sizes: {0: 2283952, 5: 2284214, 11: 2284270, 2807: 2309539, 2808: 2318537, 2809: 2318593, 2815: 2318947}
[2026-01-15 06:29:36] 2026-01-15 11:28:37,626 | INFO     | --------------------------------------------------
[2026-01-15 06:29:36] 2026-01-15 11:28:37,626 | INFO     | 
[2026-01-15 06:29:36] 2026-01-15 11:28:37,626 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-15 06:29:36] 2026-01-15 11:28:37,648 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,649 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,649 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,649 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,650 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,651 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,651 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,651 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,651 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,651 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,652 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 06:29:36] 2026-01-15 11:28:37,652 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,652 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 06:29:36] 2026-01-15 11:28:37,652 | INFO     | job 6970395251 has completed (purged errors)
[2026-01-15 06:29:36] 2026-01-15 11:28:37,652 | INFO     | overall cleanup function is called
[2026-01-15 06:29:36] 2026-01-15 11:28:38,657 | INFO     | --- collectZombieJob: --- 10, [3796]
[2026-01-15 06:29:36] 2026-01-15 11:28:38,657 | INFO     | zombie collector waiting for pid 3796
[2026-01-15 06:29:36] 2026-01-15 11:28:38,657 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 06:29:36] 2026-01-15 11:28:38,657 | INFO     | collected zombie processes
[2026-01-15 06:29:36] 2026-01-15 11:28:38,657 | INFO     | will attempt to kill all subprocesses of pid=3796
[2026-01-15 06:29:36] 2026-01-15 11:28:38,747 | INFO     | process IDs to be killed: [3796] (in reverse order)
[2026-01-15 06:29:36] 2026-01-15 11:28:38,797 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 06:29:36] 2026-01-15 11:28:38,798 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 06:29:36] 2026-01-15 11:28:38,801 | INFO     | did not find any defunct processes belonging to 3796
[2026-01-15 06:29:36] 2026-01-15 11:28:38,804 | INFO     | did not find any defunct processes belonging to 3796
[2026-01-15 06:29:36] 2026-01-15 11:28:38,805 | INFO     | ready for new job
[2026-01-15 06:29:36] 2026-01-15 11:28:38,805 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 06:29:36] 2026-01-15 11:28:38,806 | INFO     | ***************************************
[2026-01-15 06:29:36] 2026-01-15 11:28:38,806 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 06:29:36] 2026-01-15 11:28:38,806 | INFO     | ***************************************
[2026-01-15 06:29:36] 2026-01-15 11:28:38,806 | INFO     | 
[2026-01-15 06:29:36] 2026-01-15 11:28:38,807 | INFO     | architecture information:
[2026-01-15 06:29:36] 2026-01-15 11:28:38,807 | INFO     | executing command: cat /etc/os-release
[2026-01-15 06:29:36] 2026-01-15 11:28:38,822 | INFO     | cat /etc/os-release:
[2026-01-15 06:29:36] NAME="CentOS Linux"
[2026-01-15 06:29:36] VERSION="7 (Core)"
[2026-01-15 06:29:36] ID="centos"
[2026-01-15 06:29:36] ID_LIKE="rhel fedora"
[2026-01-15 06:29:36] VERSION_ID="7"
[2026-01-15 06:29:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 06:29:36] ANSI_COLOR="0;31"
[2026-01-15 06:29:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 06:29:36] HOME_URL="https://www.centos.org/"
[2026-01-15 06:29:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 06:29:36] 
[2026-01-15 06:29:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 06:29:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 06:29:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 06:29:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 06:29:36] 
[2026-01-15 06:29:36] 2026-01-15 11:28:38,822 | INFO     | ***************************************
[2026-01-15 06:29:36] 2026-01-15 11:28:39,325 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-15 06:29:36] 2026-01-15 11:28:39,343 | INFO     | sufficient remaining disk space (28642902016 B)
[2026-01-15 06:29:36] 2026-01-15 11:28:39,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 06:29:36] 2026-01-15 11:28:39,344 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 06:29:36] 2026-01-15 11:28:39,344 | INFO     | update_server=False
[2026-01-15 06:29:36] 2026-01-15 11:28:39,344 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 06:29:36] 2026-01-15 11:28:39,344 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 06:29:36] 2026-01-15 11:28:39,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 06:29:36] 2026-01-15 11:28:39,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 06:29:36] 2026-01-15 11:28:39,345 | INFO     | aborting loop
[2026-01-15 06:29:36] 2026-01-15 11:28:39,516 | INFO     | all data control threads have been joined
[2026-01-15 06:29:36] 2026-01-15 11:28:40,279 | INFO     | all job control threads have been joined
[2026-01-15 06:29:36] 2026-01-15 11:28:40,347 | INFO     | [job] retrieve thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:40,351 | INFO     | [job] queue monitor thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:40,351 | INFO     | [job] job monitor thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:40,521 | INFO     | [data] control thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:40,619 | INFO     | all payload control threads have been joined
[2026-01-15 06:29:36] 2026-01-15 11:28:40,682 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:40,689 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:40,894 | INFO     | [payload] validate_post thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:41,082 | INFO     | [data] copytool_in thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:41,165 | INFO     | [payload] failed_post thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:41,285 | INFO     | [job] control thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:41,350 | INFO     | [data] copytool_out thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:41,625 | INFO     | [payload] control thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:41,720 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:41,828 | INFO     | [job] validate thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:42,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 06:29:36] 2026-01-15 11:28:46,215 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:28:49,440 | INFO     | job.realtimelogging is not enabled
[2026-01-15 06:29:36] 2026-01-15 11:28:50,445 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 06:29:36] 2026-01-15 11:29:09,488 | INFO     | PID=29695 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 06:29:36] 2026-01-15 11:29:09,489 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 06:29:36] 2026-01-15 11:29:09,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 06:29:36] 2026-01-15 11:29:09,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 06:29:36] 2026-01-15 11:29:30,570 | INFO     | [monitor] cgroup control has ended
[2026-01-15 06:29:36] 2026-01-15 11:29:30,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139656520492864)>', '<ExcThread(monitor, started 139655425029888)>']
[2026-01-15 06:29:36] 2026-01-15 11:29:31,575 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 06:29:36] 2026-01-15 11:29:31,575 | INFO     | [monitor] control thread has ended
[2026-01-15 06:29:36] 2026-01-15 11:29:35,848 | INFO     | all workflow threads have been joined
[2026-01-15 06:29:36] 2026-01-15 11:29:35,848 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 06:29:36] 2026-01-15 11:29:35,855 | INFO     | traces error code: 0
[2026-01-15 06:29:36] 2026-01-15 11:29:35,855 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 06:29:36] 2026-01-15 11:29:35,960 [wrapper] ==== pilot stdout END ====
[2026-01-15 06:29:36] 2026-01-15 11:29:35,964 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 06:29:36] 2026-01-15 11:29:35,968 [wrapper] pilotpid: 29695
[2026-01-15 06:29:36] 2026-01-15 11:29:35,972 [wrapper] Pilot exit status: 0
[2026-01-15 06:29:36] 2026-01-15 11:29:35,987 [wrapper] pandaids: 6970395251
[2026-01-15 06:29:36] 2026-01-15 11:29:36,033 [wrapper] cleanup supervisor_pilot 23109 29696
[2026-01-15 06:29:36] 2026-01-15 11:29:36,037 [wrapper] Test setup, not cleaning
[2026-01-15 06:29:36] 2026-01-15 11:29:36,041 [wrapper] apfmon messages muted
[2026-01-15 06:29:36] 2026-01-15 11:29:36,044 [wrapper] ==== wrapper stdout END ====
[2026-01-15 06:29:36] 2026-01-15 11:29:36,048 [wrapper] ==== wrapper stderr END ====
[2026-01-15 06:29:36]  *** Error codes and diagnostics ***
[2026-01-15 06:29:36]     "exeErrorCode": 0,
[2026-01-15 06:29:36]     "exeErrorDiag": "",
[2026-01-15 06:29:36]     "pilotErrorCode": 0,
[2026-01-15 06:29:36]     "pilotErrorDiag": "",
[2026-01-15 06:29:36]  *** Listing of results directory ***
[2026-01-15 06:29:36] total 733708
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas    579449 Jan 15 01:52 pilot3.tar.gz
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas      5112 Jan 15 01:55 queuedata.json
[2026-01-15 06:29:36] -rwx------ 1 boincer umatlas     36322 Jan 15 01:55 runpilot2-wrapper.sh
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas       100 Jan 15 05:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 06:29:36] -rwxr-xr-x 1 boincer umatlas      7986 Jan 15 05:41 run_atlas
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas       105 Jan 15 05:41 job.xml
[2026-01-15 06:29:36] -rw-r--r-- 2 boincer umatlas 592233675 Jan 15 05:41 EVNT.32794306._001838.pool.root.1
[2026-01-15 06:29:36] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 05:41 start_atlas.sh
[2026-01-15 06:29:36] drwxrwx--x 2 boincer umatlas      4096 Jan 15 05:41 shared
[2026-01-15 06:29:36] -rw-r--r-- 2 boincer umatlas    592403 Jan 15 05:41 input.tar.gz
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas         0 Jan 15 05:41 boinc_lockfile
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas      2509 Jan 15 05:41 pandaJob.out
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas        57 Jan 15 05:41 setup.sh.local
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas   1007559 Jan 15 05:41 agis_schedconf.cvmfs.json
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas   1516246 Jan 15 05:41 agis_ddmendpoints.agis.ALL.json
[2026-01-15 06:29:36] drwx------ 5 boincer umatlas      4096 Jan 15 05:41 pilot3
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas      5953 Jan 15 06:27 init_data.xml
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas 153548436 Jan 15 06:28 HITS.48215263._047380.pool.root.1
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas       530 Jan 15 06:28 boinc_task_state.xml
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas      1044 Jan 15 06:28 memory_monitor_summary.json
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas    368042 Jan 15 06:28 log.48215263._047380.job.log.tgz.1
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas      7848 Jan 15 06:28 heartbeat.json
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas        95 Jan 15 06:29 pilot_heartbeat.json
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas      8192 Jan 15 06:29 boinc_mmap_file
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas        27 Jan 15 06:29 wrapper_checkpoint.txt
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas      4818 Jan 15 06:29 pilotlog.txt
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas    431470 Jan 15 06:29 log.48215263._047380.job.log.1
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas       357 Jan 15 06:29 output.list
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas       620 Jan 15 06:29 runtime_log
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas    819200 Jan 15 06:29 result.tar.gz
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas      9344 Jan 15 06:29 runtime_log.err
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas       659 Jan 15 06:29 q32LDmbRW08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm4WuKDm7FchUn.diag
[2026-01-15 06:29:36] -rw-r--r-- 1 boincer umatlas     21757 Jan 15 06:29 stderr.txt
[2026-01-15 06:29:36] HITS file was successfully produced:
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas 153548436 Jan 15 06:28 shared/HITS.pool.root.1
[2026-01-15 06:29:36]  *** Contents of shared directory: ***
[2026-01-15 06:29:36] total 729712
[2026-01-15 06:29:36] -rw-r--r-- 2 boincer umatlas 592233675 Jan 15 05:41 ATLAS.root_0
[2026-01-15 06:29:36] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 05:41 start_atlas.sh
[2026-01-15 06:29:36] -rw-r--r-- 2 boincer umatlas    592403 Jan 15 05:41 input.tar.gz
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas 153548436 Jan 15 06:28 HITS.pool.root.1
[2026-01-15 06:29:36] -rw------- 1 boincer umatlas    819200 Jan 15 06:29 result.tar.gz
06:29:38 (26010): run_atlas exited; CPU time 29221.639593
06:29:38 (26010): called boinc_finish(0)

</stderr_txt>
]]>

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