Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:05:27 (3485044): wrapper (7.7.26015): starting
13:05:27 (3485044): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 13:05:27] Arguments: --nthreads 4
[2026-01-15 13:05:27] Threads: 4
[2026-01-15 13:05:27] Checking for CVMFS
[2026-01-15 13:05:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 13:05:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 13:05:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 13:05:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 13:05:27] 2.9.2.0 2429254 2387 95040 155168 2 57 21853726 36864001 0 130560 0 2769112 99.992 94864 14845 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 13:05:27] CVMFS is ok
[2026-01-15 13:05:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 13:05:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 13:05:27] Further information can be found at the LHC@home message board.
[2026-01-15 13:05:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 13:05:27] Checking for apptainer binary...
[2026-01-15 13:05:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 13:05:27] Running /usr/bin/apptainer --version
[2026-01-15 13:05:27] apptainer version 1.4.1-1.1
[2026-01-15 13:05:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 13:05:27] thA309
[2026-01-15 13:05:27] apptainer works
[2026-01-15 13:05:27] Set ATHENA_PROC_NUMBER=4
[2026-01-15 13:05:27] Set ATHENA_CORE_NUMBER=4
[2026-01-15 13:05:27] Starting ATLAS job with PandaID=6970417628
[2026-01-15 13:05:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 13:55:56]  *** The last 200 lines of the pilot log: ***
[2026-01-15 13:55:56] 2026-01-15 12:55:25,257 | INFO     | collected zombie processes
[2026-01-15 13:55:56] 2026-01-15 12:55:25,257 | INFO     | will attempt to kill all subprocesses of pid=3495442
[2026-01-15 13:55:56] 2026-01-15 12:55:25,309 | INFO     | process IDs to be killed: [3495442] (in reverse order)
[2026-01-15 13:55:56] 2026-01-15 12:55:25,348 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 13:55:56] 2026-01-15 12:55:25,348 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 13:55:56] 2026-01-15 12:55:25,350 | INFO     | did not find any defunct processes belonging to 3495442
[2026-01-15 13:55:56] 2026-01-15 12:55:25,352 | INFO     | did not find any defunct processes belonging to 3495442
[2026-01-15 13:55:56] 2026-01-15 12:55:25,352 | INFO     | ready for new job
[2026-01-15 13:55:56] 2026-01-15 12:55:25,352 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 13:55:56] 2026-01-15 12:55:25,353 | INFO     | ***************************************
[2026-01-15 13:55:56] 2026-01-15 12:55:25,353 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 13:55:56] 2026-01-15 12:55:25,353 | INFO     | ***************************************
[2026-01-15 13:55:56] 2026-01-15 12:55:25,353 | INFO     | 
[2026-01-15 13:55:56] 2026-01-15 12:55:25,353 | INFO     | architecture information:
[2026-01-15 13:55:56] 2026-01-15 12:55:25,353 | INFO     | executing command: cat /etc/os-release
[2026-01-15 13:55:56] 2026-01-15 12:55:25,369 | INFO     | cat /etc/os-release:
[2026-01-15 13:55:56] NAME="CentOS Linux"
[2026-01-15 13:55:56] VERSION="7 (Core)"
[2026-01-15 13:55:56] ID="centos"
[2026-01-15 13:55:56] ID_LIKE="rhel fedora"
[2026-01-15 13:55:56] VERSION_ID="7"
[2026-01-15 13:55:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 13:55:56] ANSI_COLOR="0;31"
[2026-01-15 13:55:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 13:55:56] HOME_URL="https://www.centos.org/"
[2026-01-15 13:55:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 13:55:56] 
[2026-01-15 13:55:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 13:55:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 13:55:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 13:55:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 13:55:56] 
[2026-01-15 13:55:56] 2026-01-15 12:55:25,369 | INFO     | ***************************************
[2026-01-15 13:55:56] 2026-01-15 12:55:25,872 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 13:55:56] 2026-01-15 12:55:25,892 | INFO     | sufficient remaining disk space (238274215936 B)
[2026-01-15 13:55:56] 2026-01-15 12:55:25,893 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 13:55:56] 2026-01-15 12:55:25,893 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 13:55:56] 2026-01-15 12:55:25,893 | INFO     | update_server=False
[2026-01-15 13:55:56] 2026-01-15 12:55:25,893 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 13:55:56] 2026-01-15 12:55:25,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 13:55:56] 2026-01-15 12:55:25,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 13:55:56] 2026-01-15 12:55:25,893 | INFO     | aborting loop
[2026-01-15 13:55:56] 2026-01-15 12:55:26,029 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 13:55:56] 2026-01-15 12:55:26,725 | INFO     | all payload control threads have been joined
[2026-01-15 13:55:56] 2026-01-15 12:55:26,732 | INFO     | all job control threads have been joined
[2026-01-15 13:55:56] 2026-01-15 12:55:26,898 | INFO     | [job] queue monitor thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:26,899 | INFO     | [job] retrieve thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:26,899 | INFO     | [job] job monitor thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:26,995 | INFO     | all data control threads have been joined
[2026-01-15 13:55:56] 2026-01-15 12:55:27,228 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:27,300 | INFO     | [job] validate thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:27,381 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:27,399 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:27,466 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:27,730 | INFO     | [payload] control thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:27,737 | INFO     | [job] control thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:27,909 | INFO     | [payload] validate_post thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:27,926 | INFO     | [payload] failed_post thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:28,001 | INFO     | [data] control thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:28,035 | INFO     | [data] copytool_out thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:28,048 | INFO     | [data] copytool_in thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:29,383 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 13:55:56] 2026-01-15 12:55:33,390 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 13:55:56] 2026-01-15 12:55:38,802 | INFO     | [monitor] cgroup control has ended
[2026-01-15 13:55:56] 2026-01-15 12:55:40,374 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140268887209792)>', '<ExcThread(monitor, started 140268212819712)>']
[2026-01-15 13:55:56] 2026-01-15 12:55:45,394 | INFO     | all workflow threads have been joined
[2026-01-15 13:55:56] 2026-01-15 12:55:45,394 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 13:55:56] 2026-01-15 12:55:45,395 | INFO     | traces error code: 0
[2026-01-15 13:55:56] 2026-01-15 12:55:45,395 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 13:55:56] 2026-01-15 12:55:56,667 | INFO     | PID=3488846 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 13:55:56] 2026-01-15 12:55:56,668 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 13:55:56] 2026-01-15 12:55:56,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 13:55:56] 2026-01-15 12:55:56,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 13:55:56] 2026-01-15 12:55:56,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 13:55:56] 2026-01-15 12:55:56,668 | INFO     | [monitor] control thread has ended
[2026-01-15 13:55:56] 2026-01-15 12:55:56,760 [wrapper] ==== pilot stdout END ====
[2026-01-15 13:55:56] 2026-01-15 12:55:56,764 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 13:55:56] 2026-01-15 12:55:56,768 [wrapper] pilotpid: 3488846
[2026-01-15 13:55:56] 2026-01-15 12:55:56,772 [wrapper] Pilot exit status: 0
[2026-01-15 13:55:56] 2026-01-15 12:55:56,784 [wrapper] pandaids: 6970417628
[2026-01-15 13:55:56] 2026-01-15 12:55:56,810 [wrapper] cleanup supervisor_pilot 3505222 3488847
[2026-01-15 13:55:56] 2026-01-15 12:55:56,814 [wrapper] Test setup, not cleaning
[2026-01-15 13:55:56] 2026-01-15 12:55:56,818 [wrapper] apfmon messages muted
[2026-01-15 13:55:56] 2026-01-15 12:55:56,822 [wrapper] ==== wrapper stdout END ====
[2026-01-15 13:55:56] 2026-01-15 12:55:56,826 [wrapper] ==== wrapper stderr END ====
[2026-01-15 13:55:56]  *** Error codes and diagnostics ***
[2026-01-15 13:55:56]     "exeErrorCode": 0,
[2026-01-15 13:55:56]     "exeErrorDiag": "",
[2026-01-15 13:55:56]     "pilotErrorCode": 0,
[2026-01-15 13:55:56]     "pilotErrorDiag": "",
[2026-01-15 13:55:56]  *** Listing of results directory ***
[2026-01-15 13:55:56] total 738108
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc    579449 Jan 15 07:52 pilot3.tar.gz
[2026-01-15 13:55:56] -rwx------ 1 boinc boinc     36322 Jan 15 07:55 runpilot2-wrapper.sh
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc      5112 Jan 15 08:00 queuedata.json
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc       100 Jan 15 13:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 13:55:56] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 13:05 run_atlas
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc       105 Jan 15 13:05 job.xml
[2026-01-15 13:55:56] -rw-r--r-- 2 boinc boinc 594954599 Jan 15 13:05 EVNT.32794306._001881.pool.root.1
[2026-01-15 13:55:56] -rw-r--r-- 2 boinc boinc    592407 Jan 15 13:05 input.tar.gz
[2026-01-15 13:55:56] -rw-r--r-- 2 boinc boinc     15847 Jan 15 13:05 start_atlas.sh
[2026-01-15 13:55:56] drwxrwx--x 2 boinc boinc      4096 Jan 15 13:05 shared
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc         0 Jan 15 13:05 boinc_setup_complete
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc      6377 Jan 15 13:05 init_data.xml
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc         0 Jan 15 13:05 boinc_lockfile
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc      2509 Jan 15 13:05 pandaJob.out
[2026-01-15 13:55:56] -rw------- 1 boinc boinc   1004126 Jan 15 13:05 agis_schedconf.cvmfs.json
[2026-01-15 13:55:56] -rw------- 1 boinc boinc   1516246 Jan 15 13:05 agis_ddmendpoints.agis.ALL.json
[2026-01-15 13:55:56] drwx------ 5 boinc boinc      4096 Jan 15 13:05 pilot3
[2026-01-15 13:55:56] -rw------- 1 boinc boinc 155570298 Jan 15 13:54 HITS.48215263._048448.pool.root.1
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc       530 Jan 15 13:55 boinc_task_state.xml
[2026-01-15 13:55:56] -rw------- 1 boinc boinc      1015 Jan 15 13:55 memory_monitor_summary.json
[2026-01-15 13:55:56] -rw------- 1 boinc boinc    229966 Jan 15 13:55 log.48215263._048448.job.log.tgz.1
[2026-01-15 13:55:56] -rw------- 1 boinc boinc      7751 Jan 15 13:55 heartbeat.json
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc      8192 Jan 15 13:55 boinc_mmap_file
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc        27 Jan 15 13:55 wrapper_checkpoint.txt
[2026-01-15 13:55:56] -rw------- 1 boinc boinc       747 Jan 15 13:55 pilotlog.txt
[2026-01-15 13:55:56] -rw------- 1 boinc boinc        95 Jan 15 13:55 pilot_heartbeat.json
[2026-01-15 13:55:56] -rw------- 1 boinc boinc    458950 Jan 15 13:55 log.48215263._048448.job.log.1
[2026-01-15 13:55:56] -rw------- 1 boinc boinc       357 Jan 15 13:55 output.list
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc       620 Jan 15 13:55 runtime_log
[2026-01-15 13:55:56] -rw------- 1 boinc boinc    706560 Jan 15 13:55 result.tar.gz
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc      8897 Jan 15 13:55 runtime_log.err
[2026-01-15 13:55:56] -rw------- 1 boinc boinc       657 Jan 15 13:55 lglMDmzRW08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPMoKDmLvmSsn.diag
[2026-01-15 13:55:56] -rw-r--r-- 1 boinc boinc     10282 Jan 15 13:55 stderr.txt
[2026-01-15 13:55:56] HITS file was successfully produced:
[2026-01-15 13:55:56] -rw------- 1 boinc boinc 155570298 Jan 15 13:54 shared/HITS.pool.root.1
[2026-01-15 13:55:56]  *** Contents of shared directory: ***
[2026-01-15 13:55:56] total 734236
[2026-01-15 13:55:56] -rw-r--r-- 2 boinc boinc 594954599 Jan 15 13:05 ATLAS.root_0
[2026-01-15 13:55:56] -rw-r--r-- 2 boinc boinc    592407 Jan 15 13:05 input.tar.gz
[2026-01-15 13:55:56] -rw-r--r-- 2 boinc boinc     15847 Jan 15 13:05 start_atlas.sh
[2026-01-15 13:55:56] -rw------- 1 boinc boinc 155570298 Jan 15 13:54 HITS.pool.root.1
[2026-01-15 13:55:56] -rw------- 1 boinc boinc    706560 Jan 15 13:55 result.tar.gz
13:55:58 (3485044): run_atlas exited; CPU time 11048.451805
13:55:58 (3485044): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN