Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:27:55 (29276): wrapper (7.7.26015): starting
05:27:55 (29276): wrapper: running run_atlas (--nthreads 8)
[2026-01-15 05:27:55] Arguments: --nthreads 8
[2026-01-15 05:27:55] Threads: 8
[2026-01-15 05:27:55] Checking for CVMFS
[2026-01-15 05:27:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 05:27:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 05:27:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 05:27:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 05:27:56] 2.11.2.0 13817 617238 310092 155165 2 57 15938800 18432000 2749 130560 8 321764671 99.679 268786102 24536 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2026-01-15 05:27:56] CVMFS is ok
[2026-01-15 05:27:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 05:27:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 05:27:56] Further information can be found at the LHC@home message board.
[2026-01-15 05:27:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 05:27:56] Checking for apptainer binary...
[2026-01-15 05:27:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 05:27:56] Running /usr/bin/apptainer --version
[2026-01-15 05:27:56] apptainer version 1.3.2-1.el7
[2026-01-15 05:27:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 05:27:56] c-9-29.aglt2.org
[2026-01-15 05:27:56] apptainer works
[2026-01-15 05:27:56] Set ATHENA_PROC_NUMBER=8
[2026-01-15 05:27:56] Set ATHENA_CORE_NUMBER=8
[2026-01-15 05:27:56] Starting ATLAS job with PandaID=6970394316
[2026-01-15 05:27:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 07:11:44]  *** The last 200 lines of the pilot log: ***
[2026-01-15 07:11:44] 2026-01-15 12:11:08,328 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 07:11:44] 2026-01-15 12:11:08,564 | INFO     | time since job start (6181s) is within the limit (349056.0s)
[2026-01-15 07:11:44] 2026-01-15 12:11:10,570 | INFO     | time since job start (6183s) is within the limit (349056.0s)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,754 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-15 07:11:44] 2026-01-15 12:11:11,769 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.9119062500013
[2026-01-15 07:11:44] 2026-01-15 12:11:11,776 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6970394316/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,778 | INFO     | extracted standard info from prmon json
[2026-01-15 07:11:44] 2026-01-15 12:11:11,779 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 07:11:44] 2026-01-15 12:11:11,779 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 07:11:44] 2026-01-15 12:11:11,779 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 07:11:44] 2026-01-15 12:11:11,780 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 07:11:44] 2026-01-15 12:11:11,783 | INFO     | fitting pss+swap vs Time
[2026-01-15 07:11:44] 2026-01-15 12:11:11,784 | INFO     | sum of square deviations: 319447850.0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,784 | INFO     | sum of deviations: -1152663441.9999983
[2026-01-15 07:11:44] 2026-01-15 12:11:11,790 | INFO     | mean x: 1768475962.0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,790 | INFO     | mean y: 2567814.118811881
[2026-01-15 07:11:44] 2026-01-15 12:11:11,791 | INFO     | intersect: 6383758325.976
[2026-01-15 07:11:44] 2026-01-15 12:11:11,791 | INFO     | chi2: 1.4728225627419569
[2026-01-15 07:11:44] 2026-01-15 12:11:11,792 | INFO     | sum of square deviations: 274312120.0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,792 | INFO     | sum of deviations: -606420672.4999988
[2026-01-15 07:11:44] 2026-01-15 12:11:11,793 | INFO     | mean x: 1768475809.5
[2026-01-15 07:11:44] 2026-01-15 12:11:11,793 | INFO     | mean y: 2569661.0729166665
[2026-01-15 07:11:44] 2026-01-15 12:11:11,793 | INFO     | intersect: 3912131840.450808
[2026-01-15 07:11:44] 2026-01-15 12:11:11,794 | INFO     | chi2: 1.4750532484440837
[2026-01-15 07:11:44] 2026-01-15 12:11:11,794 | INFO     | current chi2=1.4750532484440837 (change=-0.15145651340199046 %)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,794 | INFO     | right removable region: 95
[2026-01-15 07:11:44] 2026-01-15 12:11:11,795 | INFO     | sum of square deviations: 274312120.0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,795 | INFO     | sum of deviations: -15741611230.500002
[2026-01-15 07:11:44] 2026-01-15 12:11:11,796 | INFO     | mean x: 1768476114.5
[2026-01-15 07:11:44] 2026-01-15 12:11:11,796 | INFO     | mean y: 2615970.7395833335
[2026-01-15 07:11:44] 2026-01-15 12:11:11,796 | INFO     | intersect: 101487973106.56065
[2026-01-15 07:11:44] 2026-01-15 12:11:11,797 | INFO     | chi2: 0.06199111586374065
[2026-01-15 07:11:44] 2026-01-15 12:11:11,797 | INFO     | current chi2=0.06199111586374065 (change=95.79099903600527 %)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,797 | INFO     | sum of square deviations: 233641590.0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,798 | INFO     | sum of deviations: -13812728675.000002
[2026-01-15 07:11:44] 2026-01-15 12:11:11,798 | INFO     | mean x: 1768476267.0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,799 | INFO     | mean y: 2608696.3626373624
[2026-01-15 07:11:44] 2026-01-15 12:11:11,799 | INFO     | intersect: 104553698441.33424
[2026-01-15 07:11:44] 2026-01-15 12:11:11,799 | INFO     | chi2: 0.06105158740438432
[2026-01-15 07:11:44] 2026-01-15 12:11:11,801 | INFO     | current chi2=0.06105158740438432 (change=1.515585654921026 %)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,801 | INFO     | left removable region: 20
[2026-01-15 07:11:44] 2026-01-15 12:11:11,802 | INFO     | sum of square deviations: 130793150.0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,802 | INFO     | sum of deviations: -8046384340.0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,807 | INFO     | mean x: 1768476389.0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,807 | INFO     | mean y: 2590866.24
[2026-01-15 07:11:44] 2026-01-15 12:11:11,807 | INFO     | intersect: 108799119752.57196
[2026-01-15 07:11:44] 2026-01-15 12:11:11,807 | INFO     | chi2: 0.052220605394163226
[2026-01-15 07:11:44] 2026-01-15 12:11:11,807 | INFO     | current memory leak: -61.52 B/s (using 75 data points, chi2=0.05)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,808 | INFO     | could have reported an average CPU frequency of 2999 MHz (7 samples)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,808 | INFO     | ..............................
[2026-01-15 07:11:44] 2026-01-15 12:11:11,808 | INFO     | . Timing measurements:
[2026-01-15 07:11:44] 2026-01-15 12:11:11,809 | INFO     | . get job = 0 s
[2026-01-15 07:11:44] 2026-01-15 12:11:11,809 | INFO     | . initial setup = 2 s
[2026-01-15 07:11:44] 2026-01-15 12:11:11,809 | INFO     | . payload setup = 4 s
[2026-01-15 07:11:44] 2026-01-15 12:11:11,809 | INFO     | . stage-in = 0 s
[2026-01-15 07:11:44] 2026-01-15 12:11:11,809 | INFO     | . payload execution = 6156 s
[2026-01-15 07:11:44] 2026-01-15 12:11:11,809 | INFO     | . stage-out = 0 s
[2026-01-15 07:11:44] 2026-01-15 12:11:11,809 | INFO     | . log creation = 0 s
[2026-01-15 07:11:44] 2026-01-15 12:11:11,810 | INFO     | ..............................
[2026-01-15 07:11:44] 2026-01-15 12:11:11,901 | INFO     | 
[2026-01-15 07:11:44] 2026-01-15 12:11:11,901 | INFO     | job summary report
[2026-01-15 07:11:44] 2026-01-15 12:11:11,902 | INFO     | --------------------------------------------------
[2026-01-15 07:11:44] 2026-01-15 12:11:11,902 | INFO     | PanDA job id: 6970394316
[2026-01-15 07:11:44] 2026-01-15 12:11:11,902 | INFO     | task id: 48215263
[2026-01-15 07:11:44] 2026-01-15 12:11:11,902 | INFO     | errors: (none)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,902 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 07:11:44] 2026-01-15 12:11:11,902 | INFO     | pilot state: finished 
[2026-01-15 07:11:44] 2026-01-15 12:11:11,903 | INFO     | transexitcode: 0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,903 | INFO     | exeerrorcode: 0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,903 | INFO     | exeerrordiag: 
[2026-01-15 07:11:44] 2026-01-15 12:11:11,903 | INFO     | exitcode: 0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,903 | INFO     | exitmsg: OK
[2026-01-15 07:11:44] 2026-01-15 12:11:11,903 | INFO     | cpuconsumptiontime: 45647 s
[2026-01-15 07:11:44] 2026-01-15 12:11:11,903 | INFO     | nevents: 400
[2026-01-15 07:11:44] 2026-01-15 12:11:11,903 | INFO     | neventsw: 0
[2026-01-15 07:11:44] 2026-01-15 12:11:11,904 | INFO     | pid: 40440
[2026-01-15 07:11:44] 2026-01-15 12:11:11,904 | INFO     | pgrp: 40440
[2026-01-15 07:11:44] 2026-01-15 12:11:11,904 | INFO     | corecount: 8
[2026-01-15 07:11:44] 2026-01-15 12:11:11,904 | INFO     | event service: False
[2026-01-15 07:11:44] 2026-01-15 12:11:11,904 | INFO     | sizes: {0: 2283781, 1: 2283980, 4: 2284242, 11: 2284270, 6162: 2311135, 6164: 2320133, 6166: 2320317, 6170: 2320511}
[2026-01-15 07:11:44] 2026-01-15 12:11:11,904 | INFO     | --------------------------------------------------
[2026-01-15 07:11:44] 2026-01-15 12:11:11,904 | INFO     | 
[2026-01-15 07:11:44] 2026-01-15 12:11:11,905 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-15 07:11:44] 2026-01-15 12:11:11,923 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,924 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,924 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,924 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,924 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,924 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,924 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,924 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,925 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,925 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,925 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,925 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,925 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,925 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,926 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,926 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,926 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,926 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,926 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,926 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 07:11:44] 2026-01-15 12:11:11,927 | INFO     | job 6970394316 has completed (purged errors)
[2026-01-15 07:11:44] 2026-01-15 12:11:11,927 | INFO     | overall cleanup function is called
[2026-01-15 07:11:44] 2026-01-15 12:11:12,022 | WARNING  | process 40440 can no longer be monitored (due to stat problems) - aborting
[2026-01-15 07:11:44] 2026-01-15 12:11:12,188 | INFO     | using path: /tmp/boinchome/slots/3/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 07:11:44] 2026-01-15 12:11:12,411 | INFO     | number of running child processes to parent process 40440: 1
[2026-01-15 07:11:44] 2026-01-15 12:11:12,411 | INFO     | maximum number of monitored processes: 6
[2026-01-15 07:11:44] 2026-01-15 12:11:12,411 | INFO     | aborting job monitoring since job object (job id=6970394316) has expired
[2026-01-15 07:11:44] 2026-01-15 12:11:12,935 | INFO     | --- collectZombieJob: --- 10, [40440]
[2026-01-15 07:11:44] 2026-01-15 12:11:12,935 | INFO     | zombie collector waiting for pid 40440
[2026-01-15 07:11:44] 2026-01-15 12:11:12,935 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 07:11:44] 2026-01-15 12:11:12,935 | INFO     | collected zombie processes
[2026-01-15 07:11:44] 2026-01-15 12:11:12,935 | INFO     | will attempt to kill all subprocesses of pid=40440
[2026-01-15 07:11:44] 2026-01-15 12:11:13,167 | INFO     | process IDs to be killed: [40440] (in reverse order)
[2026-01-15 07:11:44] 2026-01-15 12:11:13,238 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 07:11:44] 2026-01-15 12:11:13,239 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 07:11:44] 2026-01-15 12:11:13,243 | INFO     | did not find any defunct processes belonging to 40440
[2026-01-15 07:11:44] 2026-01-15 12:11:13,246 | INFO     | did not find any defunct processes belonging to 40440
[2026-01-15 07:11:44] 2026-01-15 12:11:13,246 | INFO     | ready for new job
[2026-01-15 07:11:44] 2026-01-15 12:11:13,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 07:11:44] 2026-01-15 12:11:13,247 | INFO     | ***************************************
[2026-01-15 07:11:44] 2026-01-15 12:11:13,247 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 07:11:44] 2026-01-15 12:11:13,248 | INFO     | ***************************************
[2026-01-15 07:11:44] 2026-01-15 12:11:13,248 | INFO     | 
[2026-01-15 07:11:44] 2026-01-15 12:11:13,249 | INFO     | architecture information:
[2026-01-15 07:11:44] 2026-01-15 12:11:13,249 | INFO     | executing command: cat /etc/os-release
[2026-01-15 07:11:44] 2026-01-15 12:11:13,276 | INFO     | cat /etc/os-release:
[2026-01-15 07:11:44] NAME="CentOS Linux"
[2026-01-15 07:11:44] VERSION="7 (Core)"
[2026-01-15 07:11:44] ID="centos"
[2026-01-15 07:11:44] ID_LIKE="rhel fedora"
[2026-01-15 07:11:44] VERSION_ID="7"
[2026-01-15 07:11:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 07:11:44] ANSI_COLOR="0;31"
[2026-01-15 07:11:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 07:11:44] HOME_URL="https://www.centos.org/"
[2026-01-15 07:11:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 07:11:44] 
[2026-01-15 07:11:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 07:11:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 07:11:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 07:11:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 07:11:44] 
[2026-01-15 07:11:44] 2026-01-15 12:11:13,277 | INFO     | ***************************************
[2026-01-15 07:11:44] 2026-01-15 12:11:13,779 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-15 07:11:44] 2026-01-15 12:11:13,801 | INFO     | sufficient remaining disk space (102070484992 B)
[2026-01-15 07:11:44] 2026-01-15 12:11:13,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 07:11:44] 2026-01-15 12:11:13,802 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 07:11:44] 2026-01-15 12:11:13,802 | INFO     | update_server=False
[2026-01-15 07:11:44] 2026-01-15 12:11:13,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 07:11:44] 2026-01-15 12:11:13,803 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:11:44] 2026-01-15 12:11:13,803 | INFO     | aborting loop
[2026-01-15 07:11:44] 2026-01-15 12:11:13,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:11:44] 2026-01-15 12:11:14,180 | INFO     | all job control threads have been joined
[2026-01-15 07:11:44] 2026-01-15 12:11:14,303 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 07:11:44] 2026-01-15 12:11:14,360 | INFO     | all data control threads have been joined
[2026-01-15 07:11:44] 2026-01-15 12:11:14,392 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 07:11:44] 2026-01-15 12:11:14,412 | INFO     | all payload control threads have been joined
[2026-01-15 07:11:44] 2026-01-15 12:11:14,807 | INFO     | [job] retrieve thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:14,808 | INFO     | [job] job monitor thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:14,811 | INFO     | [job] queue monitor thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:14,967 | INFO     | [job] validate thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:15,026 | INFO     | [payload] validate_post thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:15,186 | INFO     | [job] control thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:15,366 | INFO     | [data] control thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:15,417 | INFO     | [payload] control thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:15,479 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:15,641 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:15,644 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:16,013 | INFO     | [payload] failed_post thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:16,279 | INFO     | [data] copytool_in thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:16,398 | INFO     | [data] copytool_out thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:16,950 | INFO     | [monitor] cgroup control has ended
[2026-01-15 07:11:44] 2026-01-15 12:11:18,310 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:24,472 | INFO     | job.realtimelogging is not enabled
[2026-01-15 07:11:44] 2026-01-15 12:11:25,478 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 07:11:44] 2026-01-15 12:11:26,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518212364096)>', '<ExcThread(monitor, started 140517631321856)>']
[2026-01-15 07:11:44] 2026-01-15 12:11:31,423 | INFO     | all workflow threads have been joined
[2026-01-15 07:11:44] 2026-01-15 12:11:31,423 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 07:11:44] 2026-01-15 12:11:31,424 | INFO     | traces error code: 0
[2026-01-15 07:11:44] 2026-01-15 12:11:31,424 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 07:11:44] 2026-01-15 12:11:43,913 | INFO     | PID=33048 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 07:11:44] 2026-01-15 12:11:43,913 | INFO     | .. there are 4 such processes running
[2026-01-15 07:11:44] 2026-01-15 12:11:43,914 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 07:11:44] 2026-01-15 12:11:43,914 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 07:11:44] 2026-01-15 12:11:43,914 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 07:11:44] 2026-01-15 12:11:43,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 07:11:44] 2026-01-15 12:11:43,914 | INFO     | [monitor] control thread has ended
[2026-01-15 07:11:44] 2026-01-15 12:11:44,034 [wrapper] ==== pilot stdout END ====
[2026-01-15 07:11:44] 2026-01-15 12:11:44,036 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 07:11:44] 2026-01-15 12:11:44,039 [wrapper] pilotpid: 33048
[2026-01-15 07:11:44] 2026-01-15 12:11:44,041 [wrapper] Pilot exit status: 0
[2026-01-15 07:11:44] 2026-01-15 12:11:44,052 [wrapper] pandaids: 6970394316
[2026-01-15 07:11:44] 2026-01-15 12:11:44,090 [wrapper] cleanup supervisor_pilot 34135 33049
[2026-01-15 07:11:44] 2026-01-15 12:11:44,092 [wrapper] Test setup, not cleaning
[2026-01-15 07:11:44] 2026-01-15 12:11:44,095 [wrapper] apfmon messages muted
[2026-01-15 07:11:44] 2026-01-15 12:11:44,097 [wrapper] ==== wrapper stdout END ====
[2026-01-15 07:11:44] 2026-01-15 12:11:44,100 [wrapper] ==== wrapper stderr END ====
[2026-01-15 07:11:44]  *** Error codes and diagnostics ***
[2026-01-15 07:11:44]     "exeErrorCode": 0,
[2026-01-15 07:11:44]     "exeErrorDiag": "",
[2026-01-15 07:11:44]     "pilotErrorCode": 0,
[2026-01-15 07:11:44]     "pilotErrorDiag": "",
[2026-01-15 07:11:44]  *** Listing of results directory ***
[2026-01-15 07:11:44] total 740988
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas    579449 Jan 15 01:52 pilot3.tar.gz
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas      5112 Jan 15 01:55 queuedata.json
[2026-01-15 07:11:44] -rwx------ 1 boincer umatlas     36322 Jan 15 01:55 runpilot2-wrapper.sh
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas       100 Jan 15 05:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 07:11:44] -rwxr-xr-x 1 boincer umatlas      7986 Jan 15 05:27 run_atlas
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas       105 Jan 15 05:27 job.xml
[2026-01-15 07:11:44] -rw-r--r-- 2 boincer umatlas 596911724 Jan 15 05:27 EVNT.32794306._001829.pool.root.1
[2026-01-15 07:11:44] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 05:27 start_atlas.sh
[2026-01-15 07:11:44] drwxrwx--x 2 boincer umatlas      4096 Jan 15 05:27 shared
[2026-01-15 07:11:44] -rw-r--r-- 2 boincer umatlas    592396 Jan 15 05:27 input.tar.gz
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas         0 Jan 15 05:27 boinc_lockfile
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas      2509 Jan 15 05:27 pandaJob.out
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas        57 Jan 15 05:27 setup.sh.local
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas   1007559 Jan 15 05:28 agis_schedconf.cvmfs.json
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas   1516246 Jan 15 05:28 agis_ddmendpoints.agis.ALL.json
[2026-01-15 07:11:44] drwx------ 5 boincer umatlas      4096 Jan 15 05:28 pilot3
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas      6035 Jan 15 07:00 init_data.xml
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas 155442136 Jan 15 07:10 HITS.48215263._047157.pool.root.1
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas        95 Jan 15 07:10 pilot_heartbeat.json
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas       530 Jan 15 07:10 boinc_task_state.xml
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas      1046 Jan 15 07:11 memory_monitor_summary.json
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas    362464 Jan 15 07:11 log.48215263._047157.job.log.tgz.1
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas      7838 Jan 15 07:11 heartbeat.json
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas        27 Jan 15 07:11 wrapper_checkpoint.txt
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas      8192 Jan 15 07:11 boinc_mmap_file
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas       820 Jan 15 07:11 pilotlog.txt
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas    881142 Jan 15 07:11 log.48215263._047157.job.log.1
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas       357 Jan 15 07:11 output.list
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas       620 Jan 15 07:11 runtime_log
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas   1259520 Jan 15 07:11 result.tar.gz
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas      9332 Jan 15 07:11 runtime_log.err
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas       656 Jan 15 07:11 9nHLDmORW08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsUuKDmsFRHVo.diag
[2026-01-15 07:11:44] -rw-r--r-- 1 boincer umatlas     21359 Jan 15 07:11 stderr.txt
[2026-01-15 07:11:44] HITS file was successfully produced:
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas 155442136 Jan 15 07:10 shared/HITS.pool.root.1
[2026-01-15 07:11:44]  *** Contents of shared directory: ***
[2026-01-15 07:11:44] total 736560
[2026-01-15 07:11:44] -rw-r--r-- 2 boincer umatlas 596911724 Jan 15 05:27 ATLAS.root_0
[2026-01-15 07:11:44] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 05:27 start_atlas.sh
[2026-01-15 07:11:44] -rw-r--r-- 2 boincer umatlas    592396 Jan 15 05:27 input.tar.gz
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas 155442136 Jan 15 07:10 HITS.pool.root.1
[2026-01-15 07:11:44] -rw------- 1 boincer umatlas   1259520 Jan 15 07:11 result.tar.gz
07:11:45 (29276): run_atlas exited; CPU time 45766.229477
07:11:45 (29276): called boinc_finish(0)

</stderr_txt>
]]>

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