Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:19:07 (18052): wrapper (7.7.26015): starting
05:19:07 (18052): wrapper: running run_atlas (--nthreads 8)
[2026-01-15 05:19:07] Arguments: --nthreads 8
[2026-01-15 05:19:07] Threads: 8
[2026-01-15 05:19:07] Checking for CVMFS
[2026-01-15 05:19:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 05:19:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 05:19:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 05:19:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 05:19:07] 2.11.2.0 27562 405938 312880 155165 0 9 15836049 18432000 2749 130560 7 733202414 99.364 1130172087 26006 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2026-01-15 05:19:07] CVMFS is ok
[2026-01-15 05:19:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 05:19:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 05:19:07] Further information can be found at the LHC@home message board.
[2026-01-15 05:19:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 05:19:07] Checking for apptainer binary...
[2026-01-15 05:19:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 05:19:07] Running /usr/bin/apptainer --version
[2026-01-15 05:19:07] apptainer version 1.3.2-1.el7
[2026-01-15 05:19:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 05:19:08] c-9-30.aglt2.org
[2026-01-15 05:19:08] apptainer works
[2026-01-15 05:19:08] Set ATHENA_PROC_NUMBER=8
[2026-01-15 05:19:08] Set ATHENA_CORE_NUMBER=8
[2026-01-15 05:19:08] Starting ATLAS job with PandaID=6970456031
[2026-01-15 05:19:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 07:00:42]  *** The last 200 lines of the pilot log: ***
[2026-01-15 07:00:42]  protocol_id=None
[2026-01-15 07:00:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-15 07:00:42]  replicas=None
[2026-01-15 07:00:42]  scope=mc23_13p6TeV
[2026-01-15 07:00:42]  status=None
[2026-01-15 07:00:42]  status_code=0
[2026-01-15 07:00:42]  storage_token=
[2026-01-15 07:00:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6970456031/log.48215263._048821.job.log.tgz.1
[2026-01-15 07:00:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/a9/log.48215263._048821.job.log.tgz.1
[2026-01-15 07:00:42]  workdir=None
[2026-01-15 07:00:42] ]
[2026-01-15 07:00:42] 2026-01-15 12:00:03,291 | INFO     | transferring file log.48215263._048821.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6970456031/log.48215263._048821.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 07:00:42] 2026-01-15 12:00:03,291 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6970456031/log.48215263._048821.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._048821.job
[2026-01-15 07:00:42] 2026-01-15 12:00:03,306 | INFO     | adding to output.list: log.48215263._048821.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/34/a9/log.48215263._048821.job.log.tg
[2026-01-15 07:00:42] 2026-01-15 12:00:03,307 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 07:00:42] 2026-01-15 12:00:03,307 | INFO     | summary of transferred files:
[2026-01-15 07:00:42] 2026-01-15 12:00:03,308 | INFO     |  -- lfn=log.48215263._048821.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 07:00:42] 2026-01-15 12:00:03,308 | INFO     | stage-out finished correctly
[2026-01-15 07:00:42] 2026-01-15 12:00:04,984 | INFO     | time since job start (6045s) is within the limit (349056.0s)
[2026-01-15 07:00:42] 2026-01-15 12:00:05,062 | INFO     | monitor loop #430: job 0:6970456031 is in state 'finished'
[2026-01-15 07:00:42] 2026-01-15 12:00:05,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 07:00:42] 2026-01-15 12:00:05,266 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 07:00:42] 2026-01-15 12:00:06,989 | INFO     | time since job start (6047s) is within the limit (349056.0s)
[2026-01-15 07:00:42] 2026-01-15 12:00:07,081 | INFO     | job 6970456031 has state=finished
[2026-01-15 07:00:42] 2026-01-15 12:00:07,082 | INFO     | preparing for final server update for job 6970456031 in state='finished'
[2026-01-15 07:00:42] 2026-01-15 12:00:07,082 | INFO     | this job has now completed (state=finished)
[2026-01-15 07:00:42] 2026-01-15 12:00:07,082 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 07:00:42] 2026-01-15 12:00:07,083 | INFO     | log transfer has been attempted: DONE
[2026-01-15 07:00:42] 2026-01-15 12:00:07,083 | INFO     | job 6970456031 has finished - writing final server update
[2026-01-15 07:00:42] 2026-01-15 12:00:07,083 | INFO     | total number of processed events: 400 (read)
[2026-01-15 07:00:42] 2026-01-15 12:00:07,087 | INFO     | executing command: lscpu
[2026-01-15 07:00:42] 2026-01-15 12:00:07,121 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 07:00:42] 2026-01-15 12:00:07,566 | INFO     | monitor loop #431: job 0:6970456031 is in state 'finished'
[2026-01-15 07:00:42] 2026-01-15 12:00:07,567 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 07:00:42] 2026-01-15 12:00:08,995 | INFO     | time since job start (6049s) is within the limit (349056.0s)
[2026-01-15 07:00:42] 2026-01-15 12:00:08,995 | INFO     | 6052s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-15 07:00:42] 2026-01-15 12:00:10,071 | INFO     | monitor loop #432: job 0:6970456031 is in state 'finished'
[2026-01-15 07:00:42] 2026-01-15 12:00:10,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 07:00:42] 2026-01-15 12:00:10,587 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-15 07:00:42] 2026-01-15 12:00:10,595 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.9069687500014
[2026-01-15 07:00:42] 2026-01-15 12:00:10,601 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6970456031/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 07:00:42] 2026-01-15 12:00:10,601 | INFO     | extracted standard info from prmon json
[2026-01-15 07:00:42] 2026-01-15 12:00:10,602 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 07:00:42] 2026-01-15 12:00:10,602 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 07:00:42] 2026-01-15 12:00:10,602 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 07:00:42] 2026-01-15 12:00:10,602 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 07:00:42] 2026-01-15 12:00:10,606 | INFO     | fitting pss+swap vs Time
[2026-01-15 07:00:42] 2026-01-15 12:00:10,606 | INFO     | sum of square deviations: 241429643.0
[2026-01-15 07:00:42] 2026-01-15 12:00:10,607 | INFO     | sum of deviations: -7630072759.999998
[2026-01-15 07:00:42] 2026-01-15 12:00:10,607 | INFO     | mean x: 1768475462.5
[2026-01-15 07:00:42] 2026-01-15 12:00:10,607 | INFO     | mean y: 2589248.1739130435
[2026-01-15 07:00:42] 2026-01-15 12:00:10,607 | INFO     | intersect: 55892977377.31366
[2026-01-15 07:00:42] 2026-01-15 12:00:10,607 | INFO     | chi2: 0.022845561393092715
[2026-01-15 07:00:42] 2026-01-15 12:00:10,608 | INFO     | current memory leak: -31.60 B/s (using 92 data points, chi2=0.02)
[2026-01-15 07:00:42] 2026-01-15 12:00:10,608 | INFO     | could have reported an average CPU frequency of 2999 MHz (7 samples)
[2026-01-15 07:00:42] 2026-01-15 12:00:10,608 | INFO     | ..............................
[2026-01-15 07:00:42] 2026-01-15 12:00:10,608 | INFO     | . Timing measurements:
[2026-01-15 07:00:42] 2026-01-15 12:00:10,609 | INFO     | . get job = 0 s
[2026-01-15 07:00:42] 2026-01-15 12:00:10,609 | INFO     | . initial setup = 2 s
[2026-01-15 07:00:42] 2026-01-15 12:00:10,609 | INFO     | . payload setup = 4 s
[2026-01-15 07:00:42] 2026-01-15 12:00:10,609 | INFO     | . stage-in = 0 s
[2026-01-15 07:00:42] 2026-01-15 12:00:10,609 | INFO     | . payload execution = 6020 s
[2026-01-15 07:00:42] 2026-01-15 12:00:10,609 | INFO     | . stage-out = 0 s
[2026-01-15 07:00:42] 2026-01-15 12:00:10,609 | INFO     | . log creation = 0 s
[2026-01-15 07:00:42] 2026-01-15 12:00:10,610 | INFO     | ..............................
[2026-01-15 07:00:42] 2026-01-15 12:00:10,749 | INFO     | 
[2026-01-15 07:00:42] 2026-01-15 12:00:10,750 | INFO     | job summary report
[2026-01-15 07:00:42] 2026-01-15 12:00:10,750 | INFO     | --------------------------------------------------
[2026-01-15 07:00:42] 2026-01-15 12:00:10,750 | INFO     | PanDA job id: 6970456031
[2026-01-15 07:00:42] 2026-01-15 12:00:10,750 | INFO     | task id: 48215263
[2026-01-15 07:00:42] 2026-01-15 12:00:10,750 | INFO     | errors: (none)
[2026-01-15 07:00:42] 2026-01-15 12:00:10,750 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 07:00:42] 2026-01-15 12:00:10,751 | INFO     | pilot state: finished 
[2026-01-15 07:00:42] 2026-01-15 12:00:10,751 | INFO     | transexitcode: 0
[2026-01-15 07:00:42] 2026-01-15 12:00:10,751 | INFO     | exeerrorcode: 0
[2026-01-15 07:00:42] 2026-01-15 12:00:10,751 | INFO     | exeerrordiag: 
[2026-01-15 07:00:42] 2026-01-15 12:00:10,751 | INFO     | exitcode: 0
[2026-01-15 07:00:42] 2026-01-15 12:00:10,751 | INFO     | exitmsg: OK
[2026-01-15 07:00:42] 2026-01-15 12:00:10,752 | INFO     | cpuconsumptiontime: 44884 s
[2026-01-15 07:00:42] 2026-01-15 12:00:10,752 | INFO     | nevents: 400
[2026-01-15 07:00:42] 2026-01-15 12:00:10,752 | INFO     | neventsw: 0
[2026-01-15 07:00:42] 2026-01-15 12:00:10,752 | INFO     | pid: 29451
[2026-01-15 07:00:42] 2026-01-15 12:00:10,752 | INFO     | pgrp: 29451
[2026-01-15 07:00:42] 2026-01-15 12:00:10,752 | INFO     | corecount: 8
[2026-01-15 07:00:42] 2026-01-15 12:00:10,752 | INFO     | event service: False
[2026-01-15 07:00:42] 2026-01-15 12:00:10,753 | INFO     | sizes: {0: 2283894, 4: 2284156, 11: 2284184, 6028: 2310989, 6029: 2310988, 6030: 2320042, 6032: 2320226, 6037: 2320420}
[2026-01-15 07:00:42] 2026-01-15 12:00:10,753 | INFO     | --------------------------------------------------
[2026-01-15 07:00:42] 2026-01-15 12:00:10,753 | INFO     | 
[2026-01-15 07:00:42] 2026-01-15 12:00:10,753 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-15 07:00:42] 2026-01-15 12:00:10,776 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,776 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,777 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,777 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,777 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,777 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,777 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,777 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,778 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,778 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,778 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,778 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,778 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,779 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 07:00:42] 2026-01-15 12:00:10,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,779 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 07:00:42] 2026-01-15 12:00:10,780 | INFO     | job 6970456031 has completed (purged errors)
[2026-01-15 07:00:42] 2026-01-15 12:00:10,780 | INFO     | overall cleanup function is called
[2026-01-15 07:00:42] 2026-01-15 12:00:11,788 | INFO     | --- collectZombieJob: --- 10, [29451]
[2026-01-15 07:00:42] 2026-01-15 12:00:11,789 | INFO     | zombie collector waiting for pid 29451
[2026-01-15 07:00:42] 2026-01-15 12:00:11,789 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 07:00:42] 2026-01-15 12:00:11,789 | INFO     | collected zombie processes
[2026-01-15 07:00:42] 2026-01-15 12:00:11,789 | INFO     | will attempt to kill all subprocesses of pid=29451
[2026-01-15 07:00:42] 2026-01-15 12:00:12,022 | INFO     | process IDs to be killed: [29451] (in reverse order)
[2026-01-15 07:00:42] 2026-01-15 12:00:12,095 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 07:00:42] 2026-01-15 12:00:12,095 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 07:00:42] 2026-01-15 12:00:12,099 | INFO     | did not find any defunct processes belonging to 29451
[2026-01-15 07:00:42] 2026-01-15 12:00:12,103 | INFO     | did not find any defunct processes belonging to 29451
[2026-01-15 07:00:42] 2026-01-15 12:00:12,104 | INFO     | ready for new job
[2026-01-15 07:00:42] 2026-01-15 12:00:12,104 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 07:00:42] 2026-01-15 12:00:12,106 | INFO     | ***************************************
[2026-01-15 07:00:42] 2026-01-15 12:00:12,106 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 07:00:42] 2026-01-15 12:00:12,106 | INFO     | ***************************************
[2026-01-15 07:00:42] 2026-01-15 12:00:12,106 | INFO     | 
[2026-01-15 07:00:42] 2026-01-15 12:00:12,108 | INFO     | architecture information:
[2026-01-15 07:00:42] 2026-01-15 12:00:12,108 | INFO     | executing command: cat /etc/os-release
[2026-01-15 07:00:42] 2026-01-15 12:00:12,122 | INFO     | cat /etc/os-release:
[2026-01-15 07:00:42] NAME="CentOS Linux"
[2026-01-15 07:00:42] VERSION="7 (Core)"
[2026-01-15 07:00:42] ID="centos"
[2026-01-15 07:00:42] ID_LIKE="rhel fedora"
[2026-01-15 07:00:42] VERSION_ID="7"
[2026-01-15 07:00:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 07:00:42] ANSI_COLOR="0;31"
[2026-01-15 07:00:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 07:00:42] HOME_URL="https://www.centos.org/"
[2026-01-15 07:00:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 07:00:42] 
[2026-01-15 07:00:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 07:00:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 07:00:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 07:00:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 07:00:42] 
[2026-01-15 07:00:42] 2026-01-15 12:00:12,123 | INFO     | ***************************************
[2026-01-15 07:00:42] 2026-01-15 12:00:12,626 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-15 07:00:42] 2026-01-15 12:00:12,641 | INFO     | sufficient remaining disk space (101961433088 B)
[2026-01-15 07:00:42] 2026-01-15 12:00:12,641 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 07:00:42] 2026-01-15 12:00:12,642 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 07:00:42] 2026-01-15 12:00:12,642 | INFO     | update_server=False
[2026-01-15 07:00:42] 2026-01-15 12:00:12,642 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 07:00:42] 2026-01-15 12:00:12,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:00:42] 2026-01-15 12:00:12,937 | INFO     | all data control threads have been joined
[2026-01-15 07:00:42] 2026-01-15 12:00:13,527 | INFO     | all job control threads have been joined
[2026-01-15 07:00:42] 2026-01-15 12:00:13,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:00:42] 2026-01-15 12:00:13,580 | INFO     | aborting loop
[2026-01-15 07:00:42] 2026-01-15 12:00:13,648 | INFO     | [job] retrieve thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:13,650 | INFO     | [job] queue monitor thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:13,663 | INFO     | all payload control threads have been joined
[2026-01-15 07:00:42] 2026-01-15 12:00:13,779 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:13,857 | INFO     | [data] copytool_in thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:13,942 | INFO     | [data] control thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:13,969 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 07:00:42] 2026-01-15 12:00:14,042 | INFO     | [payload] failed_post thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:14,458 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:14,533 | INFO     | [job] control thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:14,586 | INFO     | [job] job monitor thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:14,662 | INFO     | [payload] validate_post thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:14,669 | INFO     | [payload] control thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:14,687 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:14,688 | INFO     | [job] validate thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:14,779 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:15,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 07:00:42] 2026-01-15 12:00:15,975 | INFO     | [data] copytool_out thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:19,868 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 07:00:42] 2026-01-15 12:00:28,472 | INFO     | [monitor] cgroup control has ended
[2026-01-15 07:00:42] 2026-01-15 12:00:30,515 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140346858374976)>', '<ExcThread(monitor, started 140346394646272)>']
[2026-01-15 07:00:42] 2026-01-15 12:00:35,540 | INFO     | all workflow threads have been joined
[2026-01-15 07:00:42] 2026-01-15 12:00:35,541 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 07:00:42] 2026-01-15 12:00:35,541 | INFO     | traces error code: 0
[2026-01-15 07:00:42] 2026-01-15 12:00:35,541 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 07:00:42] 2026-01-15 12:00:42,351 | INFO     | PID=21757 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 07:00:42] 2026-01-15 12:00:42,351 | INFO     | .. there are 4 such processes running
[2026-01-15 07:00:42] 2026-01-15 12:00:42,351 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 07:00:42] 2026-01-15 12:00:42,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 07:00:42] 2026-01-15 12:00:42,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 07:00:42] 2026-01-15 12:00:42,352 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 07:00:42] 2026-01-15 12:00:42,352 | INFO     | [monitor] control thread has ended
[2026-01-15 07:00:42] 2026-01-15 12:00:42,481 [wrapper] ==== pilot stdout END ====
[2026-01-15 07:00:42] 2026-01-15 12:00:42,484 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 07:00:42] 2026-01-15 12:00:42,486 [wrapper] pilotpid: 21757
[2026-01-15 07:00:42] 2026-01-15 12:00:42,488 [wrapper] Pilot exit status: 0
[2026-01-15 07:00:42] 2026-01-15 12:00:42,503 [wrapper] pandaids: 6970456031
[2026-01-15 07:00:42] 2026-01-15 12:00:42,556 [wrapper] cleanup supervisor_pilot 28038 21758
[2026-01-15 07:00:42] 2026-01-15 12:00:42,559 [wrapper] Test setup, not cleaning
[2026-01-15 07:00:42] 2026-01-15 12:00:42,561 [wrapper] apfmon messages muted
[2026-01-15 07:00:42] 2026-01-15 12:00:42,563 [wrapper] ==== wrapper stdout END ====
[2026-01-15 07:00:42] 2026-01-15 12:00:42,565 [wrapper] ==== wrapper stderr END ====
[2026-01-15 07:00:42]  *** Error codes and diagnostics ***
[2026-01-15 07:00:42]     "exeErrorCode": 0,
[2026-01-15 07:00:42]     "exeErrorDiag": "",
[2026-01-15 07:00:42]     "pilotErrorCode": 0,
[2026-01-15 07:00:42]     "pilotErrorDiag": "",
[2026-01-15 07:00:42]  *** Listing of results directory ***
[2026-01-15 07:00:42] total 736592
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas    579449 Jan 15 01:52 pilot3.tar.gz
[2026-01-15 07:00:42] -rwx------ 1 boincer umatlas     36322 Jan 15 01:53 runpilot2-wrapper.sh
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas      5112 Jan 15 01:55 queuedata.json
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas       100 Jan 15 05:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 07:00:42] -rwxr-xr-x 1 boincer umatlas      7986 Jan 15 05:19 run_atlas
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas       105 Jan 15 05:19 job.xml
[2026-01-15 07:00:42] -rw-r--r-- 2 boincer umatlas 599245820 Jan 15 05:19 EVNT.32794306._000487.pool.root.1
[2026-01-15 07:00:42] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 05:19 start_atlas.sh
[2026-01-15 07:00:42] drwxrwx--x 2 boincer umatlas      4096 Jan 15 05:19 shared
[2026-01-15 07:00:42] -rw-r--r-- 2 boincer umatlas    592401 Jan 15 05:19 input.tar.gz
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas         0 Jan 15 05:19 boinc_lockfile
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas      2505 Jan 15 05:19 pandaJob.out
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas        57 Jan 15 05:19 setup.sh.local
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas   1007559 Jan 15 05:19 agis_schedconf.cvmfs.json
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas   1516246 Jan 15 05:19 agis_ddmendpoints.agis.ALL.json
[2026-01-15 07:00:42] drwx------ 5 boincer umatlas      4096 Jan 15 05:19 pilot3
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas      6034 Jan 15 06:58 init_data.xml
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas 148713585 Jan 15 06:59 HITS.48215263._048821.pool.root.1
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas       531 Jan 15 06:59 boinc_task_state.xml
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas        95 Jan 15 06:59 pilot_heartbeat.json
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas      1048 Jan 15 06:59 memory_monitor_summary.json
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas    331517 Jan 15 07:00 log.48215263._048821.job.log.tgz.1
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas        27 Jan 15 07:00 wrapper_checkpoint.txt
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas      8192 Jan 15 07:00 boinc_mmap_file
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas      7827 Jan 15 07:00 heartbeat.json
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas       820 Jan 15 07:00 pilotlog.txt
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas    856988 Jan 15 07:00 log.48215263._048821.job.log.1
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas       357 Jan 15 07:00 output.list
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas       620 Jan 15 07:00 runtime_log
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas   1208320 Jan 15 07:00 result.tar.gz
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas      9332 Jan 15 07:00 runtime_log.err
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas       656 Jan 15 07:00 9KgKDmAQW08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsSuKDmG6ym3n.diag
[2026-01-15 07:00:42] -rw-r--r-- 1 boincer umatlas     21866 Jan 15 07:00 stderr.txt
[2026-01-15 07:00:42] HITS file was successfully produced:
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas 148713585 Jan 15 06:59 shared/HITS.pool.root.1
[2026-01-15 07:00:42]  *** Contents of shared directory: ***
[2026-01-15 07:00:42] total 732220
[2026-01-15 07:00:42] -rw-r--r-- 2 boincer umatlas 599245820 Jan 15 05:19 ATLAS.root_0
[2026-01-15 07:00:42] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 05:19 start_atlas.sh
[2026-01-15 07:00:42] -rw-r--r-- 2 boincer umatlas    592401 Jan 15 05:19 input.tar.gz
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas 148713585 Jan 15 06:59 HITS.pool.root.1
[2026-01-15 07:00:42] -rw------- 1 boincer umatlas   1208320 Jan 15 07:00 result.tar.gz
07:00:44 (18052): run_atlas exited; CPU time 45009.087361
07:00:44 (18052): called boinc_finish(0)

</stderr_txt>
]]>

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