Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:02:22 (1919671): wrapper (7.7.26015): starting
12:02:22 (1919671): wrapper: running run_atlas (--nthreads 3)
[2026-01-15 12:02:22] Arguments: --nthreads 3
[2026-01-15 12:02:22] Threads: 3
[2026-01-15 12:02:22] Checking for CVMFS
[2026-01-15 12:02:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 12:02:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 12:02:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 12:02:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 12:02:22] 2.9.2.0 1053361 2125 84212 155165 3 57 22937021 36864001 0 130560 0 2289175 99.992 81573 17572 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 12:02:22] CVMFS is ok
[2026-01-15 12:02:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 12:02:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 12:02:22] Further information can be found at the LHC@home message board.
[2026-01-15 12:02:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 12:02:22] Checking for apptainer binary...
[2026-01-15 12:02:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 12:02:22] Running /usr/bin/apptainer --version
[2026-01-15 12:02:22] apptainer version 1.4.1-1.1
[2026-01-15 12:02:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 12:02:22] magicA246a
[2026-01-15 12:02:22] apptainer works
[2026-01-15 12:02:22] Set ATHENA_PROC_NUMBER=3
[2026-01-15 12:02:22] Set ATHENA_CORE_NUMBER=3
[2026-01-15 12:02:22] Starting ATLAS job with PandaID=6970287127
[2026-01-15 12:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 12:54:38]  *** The last 200 lines of the pilot log: ***
[2026-01-15 12:54:38] 2026-01-15 11:53:57,936 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 12:54:38] 2026-01-15 11:53:57,936 | INFO     | job 6970287127 has completed (purged errors)
[2026-01-15 12:54:38] 2026-01-15 11:53:57,936 | INFO     | overall cleanup function is called
[2026-01-15 12:54:38] 2026-01-15 11:53:58,941 | INFO     | --- collectZombieJob: --- 10, [1929844]
[2026-01-15 12:54:38] 2026-01-15 11:53:58,941 | INFO     | zombie collector waiting for pid 1929844
[2026-01-15 12:54:38] 2026-01-15 11:53:58,941 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 12:54:38] 2026-01-15 11:53:58,941 | INFO     | collected zombie processes
[2026-01-15 12:54:38] 2026-01-15 11:53:58,941 | INFO     | will attempt to kill all subprocesses of pid=1929844
[2026-01-15 12:54:38] 2026-01-15 11:53:58,999 | INFO     | process IDs to be killed: [1929844] (in reverse order)
[2026-01-15 12:54:38] 2026-01-15 11:53:59,028 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 12:54:38] 2026-01-15 11:53:59,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 12:54:38] 2026-01-15 11:53:59,030 | INFO     | did not find any defunct processes belonging to 1929844
[2026-01-15 12:54:38] 2026-01-15 11:53:59,032 | INFO     | did not find any defunct processes belonging to 1929844
[2026-01-15 12:54:38] 2026-01-15 11:53:59,032 | INFO     | ready for new job
[2026-01-15 12:54:38] 2026-01-15 11:53:59,032 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 12:54:38] 2026-01-15 11:53:59,033 | INFO     | ***************************************
[2026-01-15 12:54:38] 2026-01-15 11:53:59,033 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 12:54:38] 2026-01-15 11:53:59,033 | INFO     | ***************************************
[2026-01-15 12:54:38] 2026-01-15 11:53:59,033 | INFO     | 
[2026-01-15 12:54:38] 2026-01-15 11:53:59,033 | INFO     | architecture information:
[2026-01-15 12:54:38] 2026-01-15 11:53:59,033 | INFO     | executing command: cat /etc/os-release
[2026-01-15 12:54:38] 2026-01-15 11:53:59,042 | INFO     | cat /etc/os-release:
[2026-01-15 12:54:38] NAME="CentOS Linux"
[2026-01-15 12:54:38] VERSION="7 (Core)"
[2026-01-15 12:54:38] ID="centos"
[2026-01-15 12:54:38] ID_LIKE="rhel fedora"
[2026-01-15 12:54:38] VERSION_ID="7"
[2026-01-15 12:54:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 12:54:38] ANSI_COLOR="0;31"
[2026-01-15 12:54:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 12:54:38] HOME_URL="https://www.centos.org/"
[2026-01-15 12:54:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 12:54:38] 
[2026-01-15 12:54:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 12:54:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 12:54:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 12:54:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 12:54:38] 
[2026-01-15 12:54:38] 2026-01-15 11:53:59,042 | INFO     | ***************************************
[2026-01-15 12:54:38] 2026-01-15 11:53:59,545 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 12:54:38] 2026-01-15 11:53:59,558 | INFO     | sufficient remaining disk space (281436749824 B)
[2026-01-15 12:54:38] 2026-01-15 11:53:59,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 12:54:38] 2026-01-15 11:53:59,559 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 12:54:38] 2026-01-15 11:53:59,559 | INFO     | update_server=False
[2026-01-15 12:54:38] 2026-01-15 11:53:59,559 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 12:54:38] 2026-01-15 11:53:59,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 12:54:38] 2026-01-15 11:53:59,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:54:38] 2026-01-15 11:53:59,974 | INFO     | all data control threads have been joined
[2026-01-15 12:54:38] 2026-01-15 11:54:00,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:54:38] 2026-01-15 11:54:00,229 | INFO     | aborting loop
[2026-01-15 12:54:38] 2026-01-15 11:54:00,394 | INFO     | all job control threads have been joined
[2026-01-15 12:54:38] 2026-01-15 11:54:00,497 | INFO     | all payload control threads have been joined
[2026-01-15 12:54:38] 2026-01-15 11:54:00,564 | INFO     | [job] retrieve thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:00,564 | INFO     | [job] queue monitor thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:00,980 | INFO     | [data] control thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:01,101 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 12:54:38] 2026-01-15 11:54:01,234 | INFO     | [job] job monitor thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:01,319 | INFO     | [payload] failed_post thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:01,400 | INFO     | [job] control thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:01,438 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:01,443 | INFO     | [data] copytool_in thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:01,503 | INFO     | [payload] control thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:01,565 | INFO     | [data] copytool_out thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:01,866 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:01,866 | INFO     | [job] validate thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:02,019 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:02,077 | INFO     | [payload] validate_post thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:05,108 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:09,933 | INFO     | job.realtimelogging is not enabled
[2026-01-15 12:54:38] 2026-01-15 11:54:10,938 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 12:54:38] 2026-01-15 11:54:30,039 | INFO     | PID=1923395 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 12:54:38] 2026-01-15 11:54:30,039 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 12:54:38] 2026-01-15 11:54:30,039 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 12:54:38] 2026-01-15 11:54:30,039 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 12:54:38] 2026-01-15 11:54:31,466 | INFO     | [monitor] cgroup control has ended
[2026-01-15 12:54:38] 2026-01-15 11:54:32,859 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140148347623232)>', '<ExcThread(monitor, started 140147861481216)>']
[2026-01-15 12:54:38] 2026-01-15 11:54:33,054 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 12:54:38] 2026-01-15 11:54:33,054 | INFO     | [monitor] control thread has ended
[2026-01-15 12:54:38] 2026-01-15 11:54:37,884 | INFO     | all workflow threads have been joined
[2026-01-15 12:54:38] 2026-01-15 11:54:37,884 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 12:54:38] 2026-01-15 11:54:37,884 | INFO     | traces error code: 0
[2026-01-15 12:54:38] 2026-01-15 11:54:37,884 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 12:54:38] 2026-01-15 11:54:37,936 [wrapper] ==== pilot stdout END ====
[2026-01-15 12:54:38] 2026-01-15 11:54:37,938 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 12:54:38] 2026-01-15 11:54:37,941 [wrapper] pilotpid: 1923395
[2026-01-15 12:54:38] 2026-01-15 11:54:37,943 [wrapper] Pilot exit status: 0
[2026-01-15 12:54:38] 2026-01-15 11:54:37,950 [wrapper] pandaids: 6970287127
[2026-01-15 12:54:38] 2026-01-15 11:54:37,969 [wrapper] cleanup supervisor_pilot 1940029 1923396
[2026-01-15 12:54:38] 2026-01-15 11:54:37,972 [wrapper] Test setup, not cleaning
[2026-01-15 12:54:38] 2026-01-15 11:54:37,974 [wrapper] apfmon messages muted
[2026-01-15 12:54:38] 2026-01-15 11:54:37,976 [wrapper] ==== wrapper stdout END ====
[2026-01-15 12:54:38] 2026-01-15 11:54:37,979 [wrapper] ==== wrapper stderr END ====
[2026-01-15 12:54:38]  *** Error codes and diagnostics ***
[2026-01-15 12:54:38]     "exeErrorCode": 0,
[2026-01-15 12:54:38]     "exeErrorDiag": "",
[2026-01-15 12:54:38]     "pilotErrorCode": 0,
[2026-01-15 12:54:38]     "pilotErrorDiag": "",
[2026-01-15 12:54:38]  *** Listing of results directory ***
[2026-01-15 12:54:38] total 724848
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:00 pilot3.tar.gz
[2026-01-15 12:54:38] -rwx------ 1 boinc boinc     36322 Jan 15 04:02 runpilot2-wrapper.sh
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:05 queuedata.json
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc       100 Jan 15 12:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 12:54:38] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 12:02 run_atlas
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc       105 Jan 15 12:02 job.xml
[2026-01-15 12:54:38] -rw-r--r-- 2 boinc boinc 593650751 Jan 15 12:02 EVNT.32794306._001723.pool.root.1
[2026-01-15 12:54:38] -rw-r--r-- 2 boinc boinc    592401 Jan 15 12:02 input.tar.gz
[2026-01-15 12:54:38] -rw-r--r-- 2 boinc boinc     15847 Jan 15 12:02 start_atlas.sh
[2026-01-15 12:54:38] drwxrwx--x 2 boinc boinc      4096 Jan 15 12:02 shared
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc         0 Jan 15 12:02 boinc_setup_complete
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc      6447 Jan 15 12:02 init_data.xml
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc         0 Jan 15 12:02 boinc_lockfile
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc      2508 Jan 15 12:02 pandaJob.out
[2026-01-15 12:54:38] -rw------- 1 boinc boinc   1007559 Jan 15 12:02 agis_schedconf.cvmfs.json
[2026-01-15 12:54:38] -rw------- 1 boinc boinc   1516246 Jan 15 12:02 agis_ddmendpoints.agis.ALL.json
[2026-01-15 12:54:38] drwx------ 5 boinc boinc      4096 Jan 15 12:02 pilot3
[2026-01-15 12:54:38] -rw------- 1 boinc boinc 143278395 Jan 15 12:53 HITS.48215263._044271.pool.root.1
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc       529 Jan 15 12:53 boinc_task_state.xml
[2026-01-15 12:54:38] -rw------- 1 boinc boinc        95 Jan 15 12:53 pilot_heartbeat.json
[2026-01-15 12:54:38] -rw------- 1 boinc boinc      1009 Jan 15 12:53 memory_monitor_summary.json
[2026-01-15 12:54:38] -rw------- 1 boinc boinc    224971 Jan 15 12:53 log.48215263._044271.job.log.tgz.1
[2026-01-15 12:54:38] -rw------- 1 boinc boinc      7741 Jan 15 12:53 heartbeat.json
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc      8192 Jan 15 12:54 boinc_mmap_file
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc        26 Jan 15 12:54 wrapper_checkpoint.txt
[2026-01-15 12:54:38] -rw------- 1 boinc boinc      4824 Jan 15 12:54 pilotlog.txt
[2026-01-15 12:54:38] -rw------- 1 boinc boinc    474840 Jan 15 12:54 log.48215263._044271.job.log.1
[2026-01-15 12:54:38] -rw------- 1 boinc boinc       357 Jan 15 12:54 output.list
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc       620 Jan 15 12:54 runtime_log
[2026-01-15 12:54:38] -rw------- 1 boinc boinc    716800 Jan 15 12:54 result.tar.gz
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc      8917 Jan 15 12:54 runtime_log.err
[2026-01-15 12:54:38] -rw------- 1 boinc boinc       660 Jan 15 12:54 9hSKDmZoS08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPhnKDm5ba1an.diag
[2026-01-15 12:54:38] -rw-r--r-- 1 boinc boinc     11006 Jan 15 12:54 stderr.txt
[2026-01-15 12:54:38] HITS file was successfully produced:
[2026-01-15 12:54:38] -rw------- 1 boinc boinc 143278395 Jan 15 12:53 shared/HITS.pool.root.1
[2026-01-15 12:54:38]  *** Contents of shared directory: ***
[2026-01-15 12:54:38] total 720968
[2026-01-15 12:54:38] -rw-r--r-- 2 boinc boinc 593650751 Jan 15 12:02 ATLAS.root_0
[2026-01-15 12:54:38] -rw-r--r-- 2 boinc boinc    592401 Jan 15 12:02 input.tar.gz
[2026-01-15 12:54:38] -rw-r--r-- 2 boinc boinc     15847 Jan 15 12:02 start_atlas.sh
[2026-01-15 12:54:38] -rw------- 1 boinc boinc 143278395 Jan 15 12:53 HITS.pool.root.1
[2026-01-15 12:54:38] -rw------- 1 boinc boinc    716800 Jan 15 12:54 result.tar.gz
12:54:39 (1919671): run_atlas exited; CPU time 8626.376073
12:54:39 (1919671): called boinc_finish(0)

</stderr_txt>
]]>

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