Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:09:59 (12030): wrapper (7.7.26015): starting
05:09:59 (12030): wrapper: running run_atlas (--nthreads 12)
[2026-01-15 05:09:59] Arguments: --nthreads 12
[2026-01-15 05:09:59] Threads: 12
[2026-01-15 05:09:59] Checking for CVMFS
[2026-01-15 05:10:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 05:10:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 05:10:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 05:10:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 05:10:00] 2.11.2.0 2913 359544 96216 155163 3 1 18625173 20275201 1 130560 1 153306835 99.948 21855566 16000 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-15 05:10:00] CVMFS is ok
[2026-01-15 05:10:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 05:10:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 05:10:00] Further information can be found at the LHC@home message board.
[2026-01-15 05:10:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 05:10:00] Checking for apptainer binary...
[2026-01-15 05:10:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 05:10:00] Running /usr/bin/apptainer --version
[2026-01-15 05:10:00] apptainer version 1.3.2-1.el7
[2026-01-15 05:10:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 05:10:01] c-205-6.aglt2.org
[2026-01-15 05:10:01] apptainer works
[2026-01-15 05:10:01] Set ATHENA_PROC_NUMBER=12
[2026-01-15 05:10:01] Set ATHENA_CORE_NUMBER=12
[2026-01-15 05:10:01] Starting ATLAS job with PandaID=6970417657
[2026-01-15 05:10:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 05:59:28]  *** The last 200 lines of the pilot log: ***
[2026-01-15 05:59:28]  status=None
[2026-01-15 05:59:28]  status_code=0
[2026-01-15 05:59:28]  storage_token=
[2026-01-15 05:59:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6970417657/log.48215263._048477.job.log.tgz.1
[2026-01-15 05:59:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/c6/log.48215263._048477.job.log.tgz.1
[2026-01-15 05:59:28]  workdir=None
[2026-01-15 05:59:28] ]
[2026-01-15 05:59:28] 2026-01-15 10:58:31,373 | INFO     | transferring file log.48215263._048477.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6970417657/log.48215263._048477.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 05:59:28] 2026-01-15 10:58:31,374 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6970417657/log.48215263._048477.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._048477.job
[2026-01-15 05:59:28] 2026-01-15 10:58:31,395 | INFO     | adding to output.list: log.48215263._048477.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/70/c6/log.48215263._048477.job.log.tg
[2026-01-15 05:59:28] 2026-01-15 10:58:31,396 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 05:59:28] 2026-01-15 10:58:31,396 | INFO     | summary of transferred files:
[2026-01-15 05:59:28] 2026-01-15 10:58:31,396 | INFO     |  -- lfn=log.48215263._048477.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 05:59:28] 2026-01-15 10:58:31,397 | INFO     | stage-out finished correctly
[2026-01-15 05:59:28] 2026-01-15 10:58:31,529 | INFO     | monitor loop #219: job 0:6970417657 is in state 'finished'
[2026-01-15 05:59:28] 2026-01-15 10:58:31,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 05:59:28] 2026-01-15 10:58:31,763 | INFO     | time since job start (2894s) is within the limit (349056.0s)
[2026-01-15 05:59:28] 2026-01-15 10:58:33,768 | INFO     | time since job start (2896s) is within the limit (349056.0s)
[2026-01-15 05:59:28] 2026-01-15 10:58:34,032 | INFO     | monitor loop #220: job 0:6970417657 is in state 'finished'
[2026-01-15 05:59:28] 2026-01-15 10:58:34,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 05:59:28] 2026-01-15 10:58:34,560 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 05:59:28] 2026-01-15 10:58:34,882 | INFO     | PID=15826 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 05:59:28] 2026-01-15 10:58:35,478 | INFO     | job 6970417657 has state=finished
[2026-01-15 05:59:28] 2026-01-15 10:58:35,478 | INFO     | preparing for final server update for job 6970417657 in state='finished'
[2026-01-15 05:59:28] 2026-01-15 10:58:35,479 | INFO     | this job has now completed (state=finished)
[2026-01-15 05:59:28] 2026-01-15 10:58:35,479 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 05:59:28] 2026-01-15 10:58:35,479 | INFO     | log transfer has been attempted: DONE
[2026-01-15 05:59:28] 2026-01-15 10:58:35,479 | INFO     | job 6970417657 has finished - writing final server update
[2026-01-15 05:59:28] 2026-01-15 10:58:35,480 | INFO     | total number of processed events: 400 (read)
[2026-01-15 05:59:28] 2026-01-15 10:58:35,480 | INFO     | executing command: lscpu
[2026-01-15 05:59:28] 2026-01-15 10:58:35,505 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 05:59:28] 2026-01-15 10:58:35,882 | INFO     | time since job start (2898s) is within the limit (349056.0s)
[2026-01-15 05:59:28] 2026-01-15 10:58:36,542 | INFO     | monitor loop #221: job 0:6970417657 is in state 'finished'
[2026-01-15 05:59:28] 2026-01-15 10:58:36,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 05:59:28] 2026-01-15 10:58:37,888 | INFO     | time since job start (2900s) is within the limit (349056.0s)
[2026-01-15 05:59:28] 2026-01-15 10:58:39,045 | INFO     | monitor loop #222: job 0:6970417657 is in state 'finished'
[2026-01-15 05:59:28] 2026-01-15 10:58:39,045 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 05:59:28] 2026-01-15 10:58:39,894 | INFO     | time since job start (2902s) is within the limit (349056.0s)
[2026-01-15 05:59:28] 2026-01-15 10:58:41,207 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-15 05:59:28] 2026-01-15 10:58:41,210 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2026-01-15 05:59:28] 2026-01-15 10:58:41,213 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6970417657/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 05:59:28] 2026-01-15 10:58:41,213 | INFO     | extracted standard info from prmon json
[2026-01-15 05:59:28] 2026-01-15 10:58:41,213 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 05:59:28] 2026-01-15 10:58:41,214 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 05:59:28] 2026-01-15 10:58:41,214 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 05:59:28] 2026-01-15 10:58:41,214 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 05:59:28] 2026-01-15 10:58:41,216 | INFO     | fitting pss+swap vs Time
[2026-01-15 05:59:28] 2026-01-15 10:58:41,216 | INFO     | sum of square deviations: 19832930.0
[2026-01-15 05:59:28] 2026-01-15 10:58:41,216 | INFO     | sum of deviations: -211743017.0
[2026-01-15 05:59:28] 2026-01-15 10:58:41,216 | INFO     | mean x: 1768473340.5
[2026-01-15 05:59:28] 2026-01-15 10:58:41,217 | INFO     | mean y: 2724794.75
[2026-01-15 05:59:28] 2026-01-15 10:58:41,217 | INFO     | intersect: 18883539712.240166
[2026-01-15 05:59:28] 2026-01-15 10:58:41,217 | INFO     | chi2: 0.01009080451180375
[2026-01-15 05:59:28] 2026-01-15 10:58:41,217 | INFO     | current memory leak: -10.68 B/s (using 40 data points, chi2=0.01)
[2026-01-15 05:59:28] 2026-01-15 10:58:41,217 | INFO     | could have reported an average CPU frequency of 1917 MHz (5 samples)
[2026-01-15 05:59:28] 2026-01-15 10:58:41,218 | INFO     | ..............................
[2026-01-15 05:59:28] 2026-01-15 10:58:41,218 | INFO     | . Timing measurements:
[2026-01-15 05:59:28] 2026-01-15 10:58:41,218 | INFO     | . get job = 0 s
[2026-01-15 05:59:28] 2026-01-15 10:58:41,218 | INFO     | . initial setup = 2 s
[2026-01-15 05:59:28] 2026-01-15 10:58:41,218 | INFO     | . payload setup = 7 s
[2026-01-15 05:59:28] 2026-01-15 10:58:41,218 | INFO     | . stage-in = 0 s
[2026-01-15 05:59:28] 2026-01-15 10:58:41,219 | INFO     | . payload execution = 2864 s
[2026-01-15 05:59:28] 2026-01-15 10:58:41,219 | INFO     | . stage-out = 0 s
[2026-01-15 05:59:28] 2026-01-15 10:58:41,219 | INFO     | . log creation = 0 s
[2026-01-15 05:59:28] 2026-01-15 10:58:41,219 | INFO     | ..............................
[2026-01-15 05:59:28] 2026-01-15 10:58:41,300 | INFO     | 
[2026-01-15 05:59:28] 2026-01-15 10:58:41,301 | INFO     | job summary report
[2026-01-15 05:59:28] 2026-01-15 10:58:41,301 | INFO     | --------------------------------------------------
[2026-01-15 05:59:28] 2026-01-15 10:58:41,301 | INFO     | PanDA job id: 6970417657
[2026-01-15 05:59:28] 2026-01-15 10:58:41,301 | INFO     | task id: 48215263
[2026-01-15 05:59:28] 2026-01-15 10:58:41,301 | INFO     | errors: (none)
[2026-01-15 05:59:28] 2026-01-15 10:58:41,301 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 05:59:28] 2026-01-15 10:58:41,302 | INFO     | pilot state: finished 
[2026-01-15 05:59:28] 2026-01-15 10:58:41,302 | INFO     | transexitcode: 0
[2026-01-15 05:59:28] 2026-01-15 10:58:41,302 | INFO     | exeerrorcode: 0
[2026-01-15 05:59:28] 2026-01-15 10:58:41,302 | INFO     | exeerrordiag: 
[2026-01-15 05:59:28] 2026-01-15 10:58:41,302 | INFO     | exitcode: 0
[2026-01-15 05:59:28] 2026-01-15 10:58:41,302 | INFO     | exitmsg: OK
[2026-01-15 05:59:28] 2026-01-15 10:58:41,303 | INFO     | cpuconsumptiontime: 29986 s
[2026-01-15 05:59:28] 2026-01-15 10:58:41,303 | INFO     | nevents: 400
[2026-01-15 05:59:28] 2026-01-15 10:58:41,303 | INFO     | neventsw: 0
[2026-01-15 05:59:28] 2026-01-15 10:58:41,303 | INFO     | pid: 22208
[2026-01-15 05:59:28] 2026-01-15 10:58:41,303 | INFO     | pgrp: 22208
[2026-01-15 05:59:28] 2026-01-15 10:58:41,303 | INFO     | corecount: 12
[2026-01-15 05:59:28] 2026-01-15 10:58:41,304 | INFO     | event service: False
[2026-01-15 05:59:28] 2026-01-15 10:58:41,304 | INFO     | sizes: {0: 2283123, 1: 2283979, 6: 2284241, 12: 2284269, 2875: 2309538, 2878: 2318536, 2881: 2318720, 2887: 2318946}
[2026-01-15 05:59:28] 2026-01-15 10:58:41,304 | INFO     | --------------------------------------------------
[2026-01-15 05:59:28] 2026-01-15 10:58:41,304 | INFO     | 
[2026-01-15 05:59:28] 2026-01-15 10:58:41,304 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-15 05:59:28] 2026-01-15 10:58:41,327 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,328 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,328 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,328 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,328 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,328 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,329 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,329 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,329 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,329 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,329 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,329 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,330 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,330 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,330 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 05:59:28] 2026-01-15 10:58:41,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,331 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 05:59:28] 2026-01-15 10:58:41,331 | INFO     | job 6970417657 has completed (purged errors)
[2026-01-15 05:59:28] 2026-01-15 10:58:41,331 | INFO     | overall cleanup function is called
[2026-01-15 05:59:28] 2026-01-15 10:58:42,339 | INFO     | --- collectZombieJob: --- 10, [22208]
[2026-01-15 05:59:28] 2026-01-15 10:58:42,340 | INFO     | zombie collector waiting for pid 22208
[2026-01-15 05:59:28] 2026-01-15 10:58:42,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 05:59:28] 2026-01-15 10:58:42,340 | INFO     | collected zombie processes
[2026-01-15 05:59:28] 2026-01-15 10:58:42,340 | INFO     | will attempt to kill all subprocesses of pid=22208
[2026-01-15 05:59:28] 2026-01-15 10:58:42,431 | INFO     | process IDs to be killed: [22208] (in reverse order)
[2026-01-15 05:59:28] 2026-01-15 10:58:42,480 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 05:59:28] 2026-01-15 10:58:42,481 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 05:59:28] 2026-01-15 10:58:42,484 | INFO     | did not find any defunct processes belonging to 22208
[2026-01-15 05:59:28] 2026-01-15 10:58:42,488 | INFO     | did not find any defunct processes belonging to 22208
[2026-01-15 05:59:28] 2026-01-15 10:58:42,488 | INFO     | ready for new job
[2026-01-15 05:59:28] 2026-01-15 10:58:42,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 05:59:28] 2026-01-15 10:58:42,490 | INFO     | ***************************************
[2026-01-15 05:59:28] 2026-01-15 10:58:42,490 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 05:59:28] 2026-01-15 10:58:42,490 | INFO     | ***************************************
[2026-01-15 05:59:28] 2026-01-15 10:58:42,490 | INFO     | 
[2026-01-15 05:59:28] 2026-01-15 10:58:42,490 | INFO     | architecture information:
[2026-01-15 05:59:28] 2026-01-15 10:58:42,491 | INFO     | executing command: cat /etc/os-release
[2026-01-15 05:59:28] 2026-01-15 10:58:42,505 | INFO     | cat /etc/os-release:
[2026-01-15 05:59:28] NAME="CentOS Linux"
[2026-01-15 05:59:28] VERSION="7 (Core)"
[2026-01-15 05:59:28] ID="centos"
[2026-01-15 05:59:28] ID_LIKE="rhel fedora"
[2026-01-15 05:59:28] VERSION_ID="7"
[2026-01-15 05:59:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 05:59:28] ANSI_COLOR="0;31"
[2026-01-15 05:59:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 05:59:28] HOME_URL="https://www.centos.org/"
[2026-01-15 05:59:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 05:59:28] 
[2026-01-15 05:59:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 05:59:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 05:59:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 05:59:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 05:59:28] 
[2026-01-15 05:59:28] 2026-01-15 10:58:42,506 | INFO     | ***************************************
[2026-01-15 05:59:28] 2026-01-15 10:58:43,009 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-15 05:59:28] 2026-01-15 10:58:43,025 | INFO     | sufficient remaining disk space (28624027648 B)
[2026-01-15 05:59:28] 2026-01-15 10:58:43,025 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 05:59:28] 2026-01-15 10:58:43,025 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 05:59:28] 2026-01-15 10:58:43,026 | INFO     | update_server=False
[2026-01-15 05:59:28] 2026-01-15 10:58:43,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 05:59:28] 2026-01-15 10:58:43,026 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 05:59:28] 2026-01-15 10:58:43,026 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 05:59:28] 2026-01-15 10:58:43,027 | INFO     | aborting loop
[2026-01-15 05:59:28] 2026-01-15 10:58:43,906 | INFO     | all payload control threads have been joined
[2026-01-15 05:59:28] 2026-01-15 10:58:43,920 | INFO     | all data control threads have been joined
[2026-01-15 05:59:28] 2026-01-15 10:58:44,031 | INFO     | [job] retrieve thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,032 | INFO     | [job] queue monitor thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,032 | INFO     | [job] job monitor thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,081 | INFO     | [payload] failed_post thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,496 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 05:59:28] 2026-01-15 10:58:44,576 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,652 | INFO     | [payload] validate_post thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,722 | INFO     | all job control threads have been joined
[2026-01-15 05:59:28] 2026-01-15 10:58:44,766 | INFO     | [job] validate thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,840 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,845 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,912 | INFO     | [payload] control thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:44,925 | INFO     | [data] control thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:45,148 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 05:59:28] 2026-01-15 10:58:45,378 | INFO     | [data] copytool_in thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:45,727 | INFO     | [job] control thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:46,501 | INFO     | [data] copytool_out thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:49,154 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:58:53,665 | INFO     | job.realtimelogging is not enabled
[2026-01-15 05:59:28] 2026-01-15 10:58:54,671 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 05:59:28] 2026-01-15 10:59:13,072 | INFO     | PID=15826 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 05:59:28] 2026-01-15 10:59:13,072 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 05:59:28] 2026-01-15 10:59:13,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 05:59:28] 2026-01-15 10:59:13,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 05:59:28] 2026-01-15 10:59:21,222 | INFO     | [monitor] cgroup control has ended
[2026-01-15 05:59:28] 2026-01-15 10:59:23,197 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591668807488)>', '<ExcThread(monitor, started 140590855485184)>']
[2026-01-15 05:59:28] 2026-01-15 10:59:24,111 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 05:59:28] 2026-01-15 10:59:24,111 | INFO     | [monitor] control thread has ended
[2026-01-15 05:59:28] 2026-01-15 10:59:28,215 | INFO     | all workflow threads have been joined
[2026-01-15 05:59:28] 2026-01-15 10:59:28,215 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 05:59:28] 2026-01-15 10:59:28,215 | INFO     | traces error code: 0
[2026-01-15 05:59:28] 2026-01-15 10:59:28,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 05:59:28] 2026-01-15 10:59:28,302 [wrapper] ==== pilot stdout END ====
[2026-01-15 05:59:28] 2026-01-15 10:59:28,305 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 05:59:28] 2026-01-15 10:59:28,309 [wrapper] pilotpid: 15826
[2026-01-15 05:59:28] 2026-01-15 10:59:28,313 [wrapper] Pilot exit status: 0
[2026-01-15 05:59:28] 2026-01-15 10:59:28,328 [wrapper] pandaids: 6970417657
[2026-01-15 05:59:28] 2026-01-15 10:59:28,371 [wrapper] cleanup supervisor_pilot  8879 15827
[2026-01-15 05:59:28] 2026-01-15 10:59:28,375 [wrapper] Test setup, not cleaning
[2026-01-15 05:59:28] 2026-01-15 10:59:28,379 [wrapper] apfmon messages muted
[2026-01-15 05:59:28] 2026-01-15 10:59:28,383 [wrapper] ==== wrapper stdout END ====
[2026-01-15 05:59:28] 2026-01-15 10:59:28,387 [wrapper] ==== wrapper stderr END ====
[2026-01-15 05:59:28]  *** Error codes and diagnostics ***
[2026-01-15 05:59:28]     "exeErrorCode": 0,
[2026-01-15 05:59:28]     "exeErrorDiag": "",
[2026-01-15 05:59:28]     "pilotErrorCode": 0,
[2026-01-15 05:59:28]     "pilotErrorDiag": "",
[2026-01-15 05:59:28]  *** Listing of results directory ***
[2026-01-15 05:59:28] total 742320
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas    579449 Jan 15 01:52 pilot3.tar.gz
[2026-01-15 05:59:28] -rwx------ 1 boincer umatlas     36322 Jan 15 01:53 runpilot2-wrapper.sh
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas      5112 Jan 15 01:55 queuedata.json
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas       100 Jan 15 05:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 05:59:28] -rwxr-xr-x 1 boincer umatlas      7986 Jan 15 05:09 run_atlas
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas       105 Jan 15 05:09 job.xml
[2026-01-15 05:59:28] -rw-r--r-- 2 boincer umatlas 599622142 Jan 15 05:09 EVNT.32794306._001882.pool.root.1
[2026-01-15 05:59:28] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 05:09 start_atlas.sh
[2026-01-15 05:59:28] drwxrwx--x 2 boincer umatlas      4096 Jan 15 05:09 shared
[2026-01-15 05:59:28] -rw-r--r-- 2 boincer umatlas    592402 Jan 15 05:09 input.tar.gz
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas         0 Jan 15 05:09 boinc_lockfile
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas      2508 Jan 15 05:10 pandaJob.out
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas        57 Jan 15 05:10 setup.sh.local
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas   1007757 Jan 15 05:10 agis_schedconf.cvmfs.json
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas   1516246 Jan 15 05:10 agis_ddmendpoints.agis.ALL.json
[2026-01-15 05:59:28] drwx------ 5 boincer umatlas      4096 Jan 15 05:10 pilot3
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas      5952 Jan 15 05:57 init_data.xml
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas 154992185 Jan 15 05:58 HITS.48215263._048477.pool.root.1
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas       530 Jan 15 05:58 boinc_task_state.xml
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas      1043 Jan 15 05:58 memory_monitor_summary.json
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas    354704 Jan 15 05:58 log.48215263._048477.job.log.tgz.1
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas      7841 Jan 15 05:58 heartbeat.json
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas      8192 Jan 15 05:59 boinc_mmap_file
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas        27 Jan 15 05:59 wrapper_checkpoint.txt
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas        95 Jan 15 05:59 pilot_heartbeat.json
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas      4818 Jan 15 05:59 pilotlog.txt
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas    440312 Jan 15 05:59 log.48215263._048477.job.log.1
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas       357 Jan 15 05:59 output.list
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas       620 Jan 15 05:59 runtime_log
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas    808960 Jan 15 05:59 result.tar.gz
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas       658 Jan 15 05:59 WT2NDm6PW08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMEoKDmJXMq7n.diag
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas      9339 Jan 15 05:59 runtime_log.err
[2026-01-15 05:59:28] -rw-r--r-- 1 boincer umatlas     22155 Jan 15 05:59 stderr.txt
[2026-01-15 05:59:28] HITS file was successfully produced:
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas 154992185 Jan 15 05:58 shared/HITS.pool.root.1
[2026-01-15 05:59:28]  *** Contents of shared directory: ***
[2026-01-15 05:59:28] total 738324
[2026-01-15 05:59:28] -rw-r--r-- 2 boincer umatlas 599622142 Jan 15 05:09 ATLAS.root_0
[2026-01-15 05:59:28] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 05:09 start_atlas.sh
[2026-01-15 05:59:28] -rw-r--r-- 2 boincer umatlas    592402 Jan 15 05:09 input.tar.gz
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas 154992185 Jan 15 05:58 HITS.pool.root.1
[2026-01-15 05:59:28] -rw------- 1 boincer umatlas    808960 Jan 15 05:59 result.tar.gz
05:59:30 (12030): run_atlas exited; CPU time 29966.207460
05:59:30 (12030): called boinc_finish(0)

</stderr_txt>
]]>

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