Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:05:48 (1603535): wrapper (7.7.26015): starting
16:05:48 (1603535): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 16:05:48] Arguments: --nthreads 12
[2026-01-16 16:05:48] Threads: 12
[2026-01-16 16:05:48] Checking for CVMFS
[2026-01-16 16:05:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 16:05:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 16:05:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 16:05:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 16:05:50] 2.13.3.0 40677 10693 67020 155212 2 240 4050708 4096001 18785 130560 0 88314964 99.982 1160278 229 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 16:05:50] CVMFS is ok
[2026-01-16 16:05:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 16:05:50] Checking for apptainer binary...
[2026-01-16 16:05:50] apptainer is not installed, using version from CVMFS
[2026-01-16 16:05:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 16:05:52] epyc7v12
[2026-01-16 16:05:52] apptainer works
[2026-01-16 16:05:52] Set ATHENA_PROC_NUMBER=12
[2026-01-16 16:05:52] Set ATHENA_CORE_NUMBER=12
[2026-01-16 16:05:52] Starting ATLAS job with PandaID=6970417597
[2026-01-16 16:05:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31427/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 17:38:39]  *** The last 200 lines of the pilot log: ***
[2026-01-16 17:38:39] 2026-01-16 17:37:21,643 | INFO     | summary of transferred files:
[2026-01-16 17:38:39] 2026-01-16 17:37:21,644 | INFO     |  -- lfn=log.48215263._048417.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 17:38:39] 2026-01-16 17:37:21,644 | INFO     | stage-out finished correctly
[2026-01-16 17:38:39] 2026-01-16 17:37:22,440 | INFO     | monitor loop #359: job 0:6970417597 is in state 'finished'
[2026-01-16 17:38:39] 2026-01-16 17:37:22,440 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:38:39] 2026-01-16 17:37:23,308 | INFO     | time since job start (5461s) is within the limit (349056.0s)
[2026-01-16 17:38:39] 2026-01-16 17:37:24,169 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 17:38:39] 2026-01-16 17:37:24,943 | INFO     | monitor loop #360: job 0:6970417597 is in state 'finished'
[2026-01-16 17:38:39] 2026-01-16 17:37:24,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:38:39] 2026-01-16 17:37:25,320 | INFO     | time since job start (5463s) is within the limit (349056.0s)
[2026-01-16 17:38:39] 2026-01-16 17:37:26,855 | INFO     | job 6970417597 has state=finished
[2026-01-16 17:38:39] 2026-01-16 17:37:26,856 | INFO     | preparing for final server update for job 6970417597 in state='finished'
[2026-01-16 17:38:39] 2026-01-16 17:37:26,856 | INFO     | this job has now completed (state=finished)
[2026-01-16 17:38:39] 2026-01-16 17:37:26,856 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 17:38:39] 2026-01-16 17:37:26,856 | INFO     | log transfer has been attempted: DONE
[2026-01-16 17:38:39] 2026-01-16 17:37:26,856 | INFO     | job 6970417597 has finished - writing final server update
[2026-01-16 17:38:39] 2026-01-16 17:37:26,857 | INFO     | total number of processed events: 400 (read)
[2026-01-16 17:38:39] 2026-01-16 17:37:26,857 | INFO     | executing command: lscpu
[2026-01-16 17:38:39] 2026-01-16 17:37:27,004 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 17:38:39] 2026-01-16 17:37:27,449 | INFO     | monitor loop #361: job 0:6970417597 is in state 'finished'
[2026-01-16 17:38:39] 2026-01-16 17:37:27,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:38:39] 2026-01-16 17:37:27,818 | INFO     | PID=1615987 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-16 17:38:39] 2026-01-16 17:37:27,818 | INFO     | .. there are 22 such processes running
[2026-01-16 17:38:39] 2026-01-16 17:37:28,820 | INFO     | time since job start (5466s) is within the limit (349056.0s)
[2026-01-16 17:38:39] 2026-01-16 17:37:29,952 | INFO     | monitor loop #362: job 0:6970417597 is in state 'finished'
[2026-01-16 17:38:39] 2026-01-16 17:37:29,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:38:39] 2026-01-16 17:37:30,827 | INFO     | time since job start (5468s) is within the limit (349056.0s)
[2026-01-16 17:38:39] 2026-01-16 17:37:32,455 | INFO     | monitor loop #363: job 0:6970417597 is in state 'finished'
[2026-01-16 17:38:39] 2026-01-16 17:37:32,455 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:38:39] 2026-01-16 17:37:32,832 | INFO     | time since job start (5470s) is within the limit (349056.0s)
[2026-01-16 17:38:39] 2026-01-16 17:37:34,838 | INFO     | time since job start (5472s) is within the limit (349056.0s)
[2026-01-16 17:38:39] 2026-01-16 17:37:34,961 | INFO     | monitor loop #364: job 0:6970417597 is in state 'finished'
[2026-01-16 17:38:39] 2026-01-16 17:37:34,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:38:39] 2026-01-16 17:37:36,846 | INFO     | time since job start (5474s) is within the limit (349056.0s)
[2026-01-16 17:38:39] 2026-01-16 17:37:37,464 | INFO     | monitor loop #365: job 0:6970417597 is in state 'finished'
[2026-01-16 17:38:39] 2026-01-16 17:37:37,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 17:38:39] 2026-01-16 17:37:38,853 | INFO     | time since job start (5476s) is within the limit (349056.0s)
[2026-01-16 17:38:39] 2026-01-16 17:37:39,744 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 17:38:39] 2026-01-16 17:37:39,798 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2397.0535312499997
[2026-01-16 17:38:39] 2026-01-16 17:37:39,877 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/0/PanDA_Pilot-6970417597/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 17:38:39] 2026-01-16 17:37:39,881 | INFO     | extracted standard info from prmon json
[2026-01-16 17:38:39] 2026-01-16 17:37:39,882 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 17:38:39] 2026-01-16 17:37:39,882 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 17:38:39] 2026-01-16 17:37:39,882 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 17:38:39] 2026-01-16 17:37:39,882 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 17:38:39] 2026-01-16 17:37:39,886 | INFO     | fitting pss+swap vs Time
[2026-01-16 17:38:39] 2026-01-16 17:37:39,887 | INFO     | sum of square deviations: 170944600.5
[2026-01-16 17:38:39] 2026-01-16 17:37:39,888 | INFO     | sum of deviations: 6274201482.000001
[2026-01-16 17:38:39] 2026-01-16 17:37:39,888 | INFO     | mean x: 1768582427.5
[2026-01-16 17:38:39] 2026-01-16 17:37:39,888 | INFO     | mean y: 2679272.2439024393
[2026-01-16 17:38:39] 2026-01-16 17:37:39,889 | INFO     | intersect: -64909827207.65313
[2026-01-16 17:38:39] 2026-01-16 17:37:39,889 | INFO     | chi2: 0.12621372148253462
[2026-01-16 17:38:39] 2026-01-16 17:37:39,889 | INFO     | current memory leak: 36.70 B/s (using 82 data points, chi2=0.13)
[2026-01-16 17:38:39] 2026-01-16 17:37:39,889 | INFO     | could have reported an average CPU frequency of 2400 MHz (7 samples)
[2026-01-16 17:38:39] 2026-01-16 17:37:39,890 | INFO     | ..............................
[2026-01-16 17:38:39] 2026-01-16 17:37:39,890 | INFO     | . Timing measurements:
[2026-01-16 17:38:39] 2026-01-16 17:37:39,890 | INFO     | . get job = 0 s
[2026-01-16 17:38:39] 2026-01-16 17:37:39,890 | INFO     | . initial setup = 2 s
[2026-01-16 17:38:39] 2026-01-16 17:37:39,893 | INFO     | . payload setup = 17 s
[2026-01-16 17:38:39] 2026-01-16 17:37:39,893 | INFO     | . stage-in = 0 s
[2026-01-16 17:38:39] 2026-01-16 17:37:39,893 | INFO     | . payload execution = 5399 s
[2026-01-16 17:38:39] 2026-01-16 17:37:39,893 | INFO     | . stage-out = 1 s
[2026-01-16 17:38:39] 2026-01-16 17:37:39,893 | INFO     | . log creation = 0 s
[2026-01-16 17:38:39] 2026-01-16 17:37:39,893 | INFO     | ..............................
[2026-01-16 17:38:39] 2026-01-16 17:37:40,358 | INFO     | 
[2026-01-16 17:38:39] 2026-01-16 17:37:40,358 | INFO     | job summary report
[2026-01-16 17:38:39] 2026-01-16 17:37:40,358 | INFO     | --------------------------------------------------
[2026-01-16 17:38:39] 2026-01-16 17:37:40,359 | INFO     | PanDA job id: 6970417597
[2026-01-16 17:38:39] 2026-01-16 17:37:40,359 | INFO     | task id: 48215263
[2026-01-16 17:38:39] 2026-01-16 17:37:40,359 | INFO     | errors: (none)
[2026-01-16 17:38:39] 2026-01-16 17:37:40,359 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 17:38:39] 2026-01-16 17:37:40,359 | INFO     | pilot state: finished 
[2026-01-16 17:38:39] 2026-01-16 17:37:40,359 | INFO     | transexitcode: 0
[2026-01-16 17:38:39] 2026-01-16 17:37:40,359 | INFO     | exeerrorcode: 0
[2026-01-16 17:38:39] 2026-01-16 17:37:40,359 | INFO     | exeerrordiag: 
[2026-01-16 17:38:39] 2026-01-16 17:37:40,359 | INFO     | exitcode: 0
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | exitmsg: OK
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | cpuconsumptiontime: 30201 s
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | nevents: 400
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | neventsw: 0
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | pid: 1627171
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | pgrp: 1627171
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | corecount: 12
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | event service: False
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | sizes: {0: 2283071, 1: 2283779, 2: 2283978, 13: 2283978, 15: 2284296, 24: 2284324, 5421: 2311236, 5422: 2320280, 5425: 2320336, 5441: 2320360}
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | --------------------------------------------------
[2026-01-16 17:38:39] 2026-01-16 17:37:40,360 | INFO     | 
[2026-01-16 17:38:39] 2026-01-16 17:37:40,361 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31427/slots/0
[2026-01-16 17:38:39] 2026-01-16 17:37:40,417 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,417 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,417 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,417 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,418 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,418 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,418 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,418 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,420 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,420 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,420 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,420 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,420 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,420 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,420 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,421 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,421 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,421 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 17:38:39] 2026-01-16 17:37:40,421 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,421 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 17:38:39] 2026-01-16 17:37:40,421 | INFO     | job 6970417597 has completed (purged errors)
[2026-01-16 17:38:39] 2026-01-16 17:37:40,421 | INFO     | overall cleanup function is called
[2026-01-16 17:38:39] 2026-01-16 17:37:41,438 | INFO     | --- collectZombieJob: --- 10, [1627171]
[2026-01-16 17:38:39] 2026-01-16 17:37:41,438 | INFO     | zombie collector waiting for pid 1627171
[2026-01-16 17:38:39] 2026-01-16 17:37:41,438 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 17:38:39] 2026-01-16 17:37:41,439 | INFO     | collected zombie processes
[2026-01-16 17:38:39] 2026-01-16 17:37:41,439 | INFO     | will attempt to kill all subprocesses of pid=1627171
[2026-01-16 17:38:39] 2026-01-16 17:37:42,528 | INFO     | process IDs to be killed: [1627171] (in reverse order)
[2026-01-16 17:38:39] 2026-01-16 17:37:43,036 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 17:38:39] 2026-01-16 17:37:43,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 17:38:39] 2026-01-16 17:37:43,061 | INFO     | did not find any defunct processes belonging to 1627171
[2026-01-16 17:38:39] 2026-01-16 17:37:43,098 | INFO     | did not find any defunct processes belonging to 1627171
[2026-01-16 17:38:39] 2026-01-16 17:37:43,098 | INFO     | ready for new job
[2026-01-16 17:38:39] 2026-01-16 17:37:43,098 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 17:38:39] 2026-01-16 17:37:43,103 | INFO     | ***************************************
[2026-01-16 17:38:39] 2026-01-16 17:37:43,104 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 17:38:39] 2026-01-16 17:37:43,104 | INFO     | ***************************************
[2026-01-16 17:38:39] 2026-01-16 17:37:43,104 | INFO     | 
[2026-01-16 17:38:39] 2026-01-16 17:37:43,123 | INFO     | architecture information:
[2026-01-16 17:38:39] 2026-01-16 17:37:43,124 | INFO     | executing command: cat /etc/os-release
[2026-01-16 17:38:39] 2026-01-16 17:37:43,167 | INFO     | cat /etc/os-release:
[2026-01-16 17:38:39] NAME="CentOS Linux"
[2026-01-16 17:38:39] VERSION="7 (Core)"
[2026-01-16 17:38:39] ID="centos"
[2026-01-16 17:38:39] ID_LIKE="rhel fedora"
[2026-01-16 17:38:39] VERSION_ID="7"
[2026-01-16 17:38:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 17:38:39] ANSI_COLOR="0;31"
[2026-01-16 17:38:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 17:38:39] HOME_URL="https://www.centos.org/"
[2026-01-16 17:38:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 17:38:39] 
[2026-01-16 17:38:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 17:38:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 17:38:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 17:38:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 17:38:39] 
[2026-01-16 17:38:39] 2026-01-16 17:37:43,167 | INFO     | ***************************************
[2026-01-16 17:38:39] 2026-01-16 17:37:43,671 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31427/slots/0
[2026-01-16 17:38:39] 2026-01-16 17:37:43,725 | INFO     | sufficient remaining disk space (319538855936 B)
[2026-01-16 17:38:39] 2026-01-16 17:37:43,725 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 17:38:39] 2026-01-16 17:37:43,725 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 17:38:39] 2026-01-16 17:37:43,725 | INFO     | update_server=False
[2026-01-16 17:38:39] 2026-01-16 17:37:43,725 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 17:38:39] 2026-01-16 17:37:43,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 17:38:39] 2026-01-16 17:37:43,726 | INFO     | aborting loop
[2026-01-16 17:38:39] 2026-01-16 17:37:43,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 17:38:39] 2026-01-16 17:37:44,218 | INFO     | all data control threads have been joined
[2026-01-16 17:38:39] 2026-01-16 17:37:44,620 | INFO     | all job control threads have been joined
[2026-01-16 17:38:39] 2026-01-16 17:37:44,730 | INFO     | [job] retrieve thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:44,731 | INFO     | [job] job monitor thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:44,744 | INFO     | [job] validate thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:44,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 17:38:39] 2026-01-16 17:37:45,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 17:38:39] 2026-01-16 17:37:45,157 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:45,197 | INFO     | all payload control threads have been joined
[2026-01-16 17:38:39] 2026-01-16 17:37:45,211 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:45,223 | INFO     | [data] control thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:45,377 | INFO     | [payload] validate_post thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:45,378 | INFO     | [payload] failed_post thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:45,415 | INFO     | [data] copytool_in thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:45,625 | INFO     | [job] control thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:46,051 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:46,125 | INFO     | [job] queue monitor thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:46,202 | INFO     | [payload] control thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:46,811 | INFO     | [data] copytool_out thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:47,911 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:37:54,720 | INFO     | job.realtimelogging is not enabled
[2026-01-16 17:38:39] 2026-01-16 17:37:55,725 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 17:38:39] 2026-01-16 17:38:13,484 | INFO     | PID=1615987 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 17:38:39] 2026-01-16 17:38:13,484 | INFO     | .. there are 22 such processes running
[2026-01-16 17:38:39] 2026-01-16 17:38:13,488 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 17:38:39] 2026-01-16 17:38:13,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 17:38:39] 2026-01-16 17:38:13,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 17:38:39] 2026-01-16 17:38:31,199 | INFO     | [monitor] cgroup control has ended
[2026-01-16 17:38:39] 2026-01-16 17:38:33,263 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138404197930816)>', '<ExcThread(monitor, started 138403794360064)>']
[2026-01-16 17:38:39] 2026-01-16 17:38:33,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 17:38:39] 2026-01-16 17:38:33,596 | INFO     | [monitor] control thread has ended
[2026-01-16 17:38:39] 2026-01-16 17:38:38,288 | INFO     | all workflow threads have been joined
[2026-01-16 17:38:39] 2026-01-16 17:38:38,288 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 17:38:39] 2026-01-16 17:38:38,289 | INFO     | traces error code: 0
[2026-01-16 17:38:39] 2026-01-16 17:38:38,289 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 17:38:39] 2026-01-16 17:38:38,580 [wrapper] ==== pilot stdout END ====
[2026-01-16 17:38:39] 2026-01-16 17:38:38,587 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 17:38:39] 2026-01-16 17:38:38,597 [wrapper] pilotpid: 1615987
[2026-01-16 17:38:39] 2026-01-16 17:38:38,605 [wrapper] Pilot exit status: 0
[2026-01-16 17:38:39] 2026-01-16 17:38:38,641 [wrapper] pandaids: 6970417597
[2026-01-16 17:38:39] 2026-01-16 17:38:38,872 [wrapper] cleanup supervisor_pilot 2113751 1615989
[2026-01-16 17:38:39] 2026-01-16 17:38:38,880 [wrapper] Test setup, not cleaning
[2026-01-16 17:38:39] 2026-01-16 17:38:38,889 [wrapper] apfmon messages muted
[2026-01-16 17:38:39] 2026-01-16 17:38:38,900 [wrapper] ==== wrapper stdout END ====
[2026-01-16 17:38:39] 2026-01-16 17:38:38,906 [wrapper] ==== wrapper stderr END ====
[2026-01-16 17:38:39]  *** Error codes and diagnostics ***
[2026-01-16 17:38:39]     "exeErrorCode": 0,
[2026-01-16 17:38:39]     "exeErrorDiag": "",
[2026-01-16 17:38:39]     "pilotErrorCode": 0,
[2026-01-16 17:38:39]     "pilotErrorDiag": "",
[2026-01-16 17:38:39]  *** Listing of results directory ***
[2026-01-16 17:38:39] total 745696
[2026-01-16 17:38:39] -rw-r--r-- 1 boinc boinc    579449 Jan 15 06:52 pilot3.tar.gz
[2026-01-16 17:38:39] -rwx------ 1 boinc boinc     36322 Jan 15 06:53 runpilot2-wrapper.sh
[2026-01-16 17:38:39] -rw-r--r-- 1 boinc boinc      5112 Jan 15 06:55 queuedata.json
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc       100 Jan 16 16:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 17:38:39] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 16:05 run_atlas
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc       105 Jan 16 16:05 job.xml
[2026-01-16 17:38:39] -rw-r--r-- 2 boinc boinc 603015669 Jan 16 16:05 EVNT.32794306._000575.pool.root.1
[2026-01-16 17:38:39] -rw-r--r-- 2 boinc boinc     15847 Jan 16 16:05 start_atlas.sh
[2026-01-16 17:38:39] drwxrwx--x 2 boinc boinc      4096 Jan 16 16:05 shared
[2026-01-16 17:38:39] -rw-r--r-- 2 boinc boinc    592411 Jan 16 16:05 input.tar.gz
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc         0 Jan 16 16:05 boinc_setup_complete
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 16:05 init_data.xml
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc         0 Jan 16 16:05 boinc_lockfile
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc      2507 Jan 16 16:05 pandaJob.out
[2026-01-16 17:38:39] -rw------- 1 boinc boinc   1004099 Jan 16 16:06 agis_schedconf.cvmfs.json
[2026-01-16 17:38:39] -rw------- 1 boinc boinc   1516246 Jan 16 16:06 agis_ddmendpoints.agis.ALL.json
[2026-01-16 17:38:39] drwx------ 5 boinc boinc      4096 Jan 16 16:06 pilot3
[2026-01-16 17:38:39] -rw------- 1 boinc boinc 154289475 Jan 16 17:36 HITS.48215263._048417.pool.root.1
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc       530 Jan 16 17:36 boinc_task_state.xml
[2026-01-16 17:38:39] -rw------- 1 boinc boinc      1022 Jan 16 17:37 memory_monitor_summary.json
[2026-01-16 17:38:39] -rw------- 1 boinc boinc    407352 Jan 16 17:37 log.48215263._048417.job.log.tgz.1
[2026-01-16 17:38:39] -rw------- 1 boinc boinc      7731 Jan 16 17:37 heartbeat.json
[2026-01-16 17:38:39] -rw------- 1 boinc boinc        95 Jan 16 17:38 pilot_heartbeat.json
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 17:38 boinc_mmap_file
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc        27 Jan 16 17:38 wrapper_checkpoint.txt
[2026-01-16 17:38:39] -rw------- 1 boinc boinc      4920 Jan 16 17:38 pilotlog.txt
[2026-01-16 17:38:39] -rw------- 1 boinc boinc    767250 Jan 16 17:38 log.48215263._048417.job.log.1
[2026-01-16 17:38:39] -rw------- 1 boinc boinc       357 Jan 16 17:38 output.list
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc       620 Jan 16 17:38 runtime_log
[2026-01-16 17:38:39] -rw------- 1 boinc boinc   1198080 Jan 16 17:38 result.tar.gz
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 17:38 runtime_log.err
[2026-01-16 17:38:39] -rw------- 1 boinc boinc       652 Jan 16 17:38 gxFNDm6PW08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrDoKDmKcwhwn.diag
[2026-01-16 17:38:39] -rw-rw-r-- 1 boinc boinc     22083 Jan 16 17:38 stderr.txt
[2026-01-16 17:38:39] HITS file was successfully produced:
[2026-01-16 17:38:39] -rw------- 1 boinc boinc 154289475 Jan 16 17:36 shared/HITS.pool.root.1
[2026-01-16 17:38:39]  *** Contents of shared directory: ***
[2026-01-16 17:38:39] total 741336
[2026-01-16 17:38:39] -rw-r--r-- 2 boinc boinc 603015669 Jan 16 16:05 ATLAS.root_0
[2026-01-16 17:38:39] -rw-r--r-- 2 boinc boinc     15847 Jan 16 16:05 start_atlas.sh
[2026-01-16 17:38:39] -rw-r--r-- 2 boinc boinc    592411 Jan 16 16:05 input.tar.gz
[2026-01-16 17:38:39] -rw------- 1 boinc boinc 154289475 Jan 16 17:36 HITS.pool.root.1
[2026-01-16 17:38:39] -rw------- 1 boinc boinc   1198080 Jan 16 17:38 result.tar.gz
17:38:40 (1603535): run_atlas exited; CPU time 30508.061003
17:38:40 (1603535): called boinc_finish(0)

</stderr_txt>
]]>

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