Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:50:19 (3775976): wrapper (7.7.26015): starting
11:50:19 (3775976): wrapper: running run_atlas (--nthreads 3)
[2026-01-15 11:50:19] Arguments: --nthreads 3
[2026-01-15 11:50:19] Threads: 3
[2026-01-15 11:50:19] Checking for CVMFS
[2026-01-15 11:50:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 11:50:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 11:50:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 11:50:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 11:50:20] 2.9.2.0 2866369 2289 81188 155165 3 57 23934827 36864001 0 130560 0 2480541 99.992 93934 3459 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 11:50:20] CVMFS is ok
[2026-01-15 11:50:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 11:50:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 11:50:20] Further information can be found at the LHC@home message board.
[2026-01-15 11:50:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 11:50:20] Checking for apptainer binary...
[2026-01-15 11:50:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 11:50:20] Running /usr/bin/apptainer --version
[2026-01-15 11:50:20] apptainer version 1.4.1-1.1
[2026-01-15 11:50:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 11:50:20] magicA161a
[2026-01-15 11:50:20] apptainer works
[2026-01-15 11:50:20] Set ATHENA_PROC_NUMBER=3
[2026-01-15 11:50:20] Set ATHENA_CORE_NUMBER=3
[2026-01-15 11:50:20] Starting ATLAS job with PandaID=6970191357
[2026-01-15 11:50:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 12:42:36]  *** The last 200 lines of the pilot log: ***
[2026-01-15 12:42:36] 2026-01-15 11:42:02,135 | INFO     | --- collectZombieJob: --- 10, [3786138]
[2026-01-15 12:42:36] 2026-01-15 11:42:02,135 | INFO     | zombie collector waiting for pid 3786138
[2026-01-15 12:42:36] 2026-01-15 11:42:02,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 12:42:36] 2026-01-15 11:42:02,135 | INFO     | collected zombie processes
[2026-01-15 12:42:36] 2026-01-15 11:42:02,135 | INFO     | will attempt to kill all subprocesses of pid=3786138
[2026-01-15 12:42:36] 2026-01-15 11:42:02,178 | INFO     | process IDs to be killed: [3786138] (in reverse order)
[2026-01-15 12:42:36] 2026-01-15 11:42:02,201 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 12:42:36] 2026-01-15 11:42:02,202 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 12:42:36] 2026-01-15 11:42:02,203 | INFO     | did not find any defunct processes belonging to 3786138
[2026-01-15 12:42:36] 2026-01-15 11:42:02,204 | INFO     | did not find any defunct processes belonging to 3786138
[2026-01-15 12:42:36] 2026-01-15 11:42:02,204 | INFO     | ready for new job
[2026-01-15 12:42:36] 2026-01-15 11:42:02,204 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 12:42:36] 2026-01-15 11:42:02,205 | INFO     | ***************************************
[2026-01-15 12:42:36] 2026-01-15 11:42:02,205 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 12:42:36] 2026-01-15 11:42:02,205 | INFO     | ***************************************
[2026-01-15 12:42:36] 2026-01-15 11:42:02,205 | INFO     | 
[2026-01-15 12:42:36] 2026-01-15 11:42:02,205 | INFO     | architecture information:
[2026-01-15 12:42:36] 2026-01-15 11:42:02,205 | INFO     | executing command: cat /etc/os-release
[2026-01-15 12:42:36] 2026-01-15 11:42:02,214 | INFO     | cat /etc/os-release:
[2026-01-15 12:42:36] NAME="CentOS Linux"
[2026-01-15 12:42:36] VERSION="7 (Core)"
[2026-01-15 12:42:36] ID="centos"
[2026-01-15 12:42:36] ID_LIKE="rhel fedora"
[2026-01-15 12:42:36] VERSION_ID="7"
[2026-01-15 12:42:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 12:42:36] ANSI_COLOR="0;31"
[2026-01-15 12:42:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 12:42:36] HOME_URL="https://www.centos.org/"
[2026-01-15 12:42:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 12:42:36] 
[2026-01-15 12:42:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 12:42:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 12:42:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 12:42:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 12:42:36] 
[2026-01-15 12:42:36] 2026-01-15 11:42:02,214 | INFO     | ***************************************
[2026-01-15 12:42:36] 2026-01-15 11:42:02,717 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 12:42:36] 2026-01-15 11:42:02,730 | INFO     | sufficient remaining disk space (380710682624 B)
[2026-01-15 12:42:36] 2026-01-15 11:42:02,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 12:42:36] 2026-01-15 11:42:02,730 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 12:42:36] 2026-01-15 11:42:02,730 | INFO     | update_server=False
[2026-01-15 12:42:36] 2026-01-15 11:42:02,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 12:42:36] 2026-01-15 11:42:02,730 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:42:36] 2026-01-15 11:42:02,735 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 12:42:36] 2026-01-15 11:42:02,735 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 12:42:36] 2026-01-15 11:42:02,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:42:36] 2026-01-15 11:42:02,735 | INFO     | will abort loop
[2026-01-15 12:42:36] 2026-01-15 11:42:02,768 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 12:42:36] 2026-01-15 11:42:02,986 | INFO     | all data control threads have been joined
[2026-01-15 12:42:36] 2026-01-15 11:42:03,041 | INFO     | all job control threads have been joined
[2026-01-15 12:42:36] 2026-01-15 11:42:03,720 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 12:42:36] 2026-01-15 11:42:03,736 | INFO     | [job] queue monitor thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:03,736 | INFO     | [job] retrieve thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:03,736 | INFO     | [job] job monitor thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:03,777 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:03,890 | INFO     | all payload control threads have been joined
[2026-01-15 12:42:36] 2026-01-15 11:42:03,922 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:03,992 | INFO     | [data] control thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:04,047 | INFO     | [job] control thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:04,156 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:04,451 | INFO     | [payload] validate_post thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:04,617 | INFO     | [data] copytool_in thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:04,892 | INFO     | [payload] control thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:04,986 | INFO     | [payload] failed_post thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:05,167 | INFO     | [job] validate thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:05,210 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:05,724 | INFO     | [data] copytool_out thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:06,775 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 12:42:36] 2026-01-15 11:42:29,156 | INFO     | [monitor] cgroup control has ended
[2026-01-15 12:42:36] 2026-01-15 11:42:30,925 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642053834560)>', '<ExcThread(monitor, started 140641539430144)>']
[2026-01-15 12:42:36] 2026-01-15 11:42:32,312 | INFO     | PID=3779697 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 12:42:36] 2026-01-15 11:42:32,312 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 12:42:36] 2026-01-15 11:42:32,312 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 12:42:36] 2026-01-15 11:42:32,312 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 12:42:36] 2026-01-15 11:42:32,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 12:42:36] 2026-01-15 11:42:32,312 | INFO     | [monitor] control thread has ended
[2026-01-15 12:42:36] 2026-01-15 11:42:35,951 | INFO     | all workflow threads have been joined
[2026-01-15 12:42:36] 2026-01-15 11:42:35,951 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 12:42:36] 2026-01-15 11:42:35,951 | INFO     | traces error code: 0
[2026-01-15 12:42:36] 2026-01-15 11:42:35,951 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 12:42:36] 2026-01-15 11:42:36,000 [wrapper] ==== pilot stdout END ====
[2026-01-15 12:42:36] 2026-01-15 11:42:36,002 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 12:42:36] 2026-01-15 11:42:36,005 [wrapper] pilotpid: 3779697
[2026-01-15 12:42:36] 2026-01-15 11:42:36,007 [wrapper] Pilot exit status: 0
[2026-01-15 12:42:36] 2026-01-15 11:42:36,014 [wrapper] pandaids: 6970191357
[2026-01-15 12:42:36] 2026-01-15 11:42:36,030 [wrapper] cleanup supervisor_pilot 3795616 3779698
[2026-01-15 12:42:36] 2026-01-15 11:42:36,032 [wrapper] Test setup, not cleaning
[2026-01-15 12:42:36] 2026-01-15 11:42:36,034 [wrapper] apfmon messages muted
[2026-01-15 12:42:36] 2026-01-15 11:42:36,037 [wrapper] ==== wrapper stdout END ====
[2026-01-15 12:42:36] 2026-01-15 11:42:36,039 [wrapper] ==== wrapper stderr END ====
[2026-01-15 12:42:36]  *** Error codes and diagnostics ***
[2026-01-15 12:42:36]     "exeErrorCode": 0,
[2026-01-15 12:42:36]     "exeErrorDiag": "",
[2026-01-15 12:42:36]     "pilotErrorCode": 0,
[2026-01-15 12:42:36]     "pilotErrorDiag": "",
[2026-01-15 12:42:36]  *** Listing of results directory ***
[2026-01-15 12:42:36] total 731704
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:00 queuedata.json
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:00 pilot3.tar.gz
[2026-01-15 12:42:36] -rwx------ 1 boinc boinc     36322 Jan 15 04:00 runpilot2-wrapper.sh
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc       100 Jan 15 11:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 12:42:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 11:50 run_atlas
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc       105 Jan 15 11:50 job.xml
[2026-01-15 12:42:36] -rw-r--r-- 2 boinc boinc 598619656 Jan 15 11:50 EVNT.32794306._001694.pool.root.1
[2026-01-15 12:42:36] -rw-r--r-- 2 boinc boinc    592398 Jan 15 11:50 input.tar.gz
[2026-01-15 12:42:36] -rw-r--r-- 2 boinc boinc     15847 Jan 15 11:50 start_atlas.sh
[2026-01-15 12:42:36] drwxrwx--x 2 boinc boinc      4096 Jan 15 11:50 shared
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc         0 Jan 15 11:50 boinc_setup_complete
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc      6448 Jan 15 11:50 init_data.xml
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc         0 Jan 15 11:50 boinc_lockfile
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc      2509 Jan 15 11:50 pandaJob.out
[2026-01-15 12:42:36] -rw------- 1 boinc boinc   1007559 Jan 15 11:50 agis_schedconf.cvmfs.json
[2026-01-15 12:42:36] -rw------- 1 boinc boinc   1516246 Jan 15 11:50 agis_ddmendpoints.agis.ALL.json
[2026-01-15 12:42:36] drwx------ 5 boinc boinc      4096 Jan 15 11:50 pilot3
[2026-01-15 12:42:36] -rw------- 1 boinc boinc 145294548 Jan 15 12:41 HITS.48215263._042534.pool.root.1
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc       529 Jan 15 12:41 boinc_task_state.xml
[2026-01-15 12:42:36] -rw------- 1 boinc boinc        95 Jan 15 12:41 pilot_heartbeat.json
[2026-01-15 12:42:36] -rw------- 1 boinc boinc      1017 Jan 15 12:41 memory_monitor_summary.json
[2026-01-15 12:42:36] -rw------- 1 boinc boinc    238593 Jan 15 12:41 log.48215263._042534.job.log.tgz.1
[2026-01-15 12:42:36] -rw------- 1 boinc boinc      7758 Jan 15 12:42 heartbeat.json
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc      8192 Jan 15 12:42 boinc_mmap_file
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc        26 Jan 15 12:42 wrapper_checkpoint.txt
[2026-01-15 12:42:36] -rw------- 1 boinc boinc      4938 Jan 15 12:42 pilotlog.txt
[2026-01-15 12:42:36] -rw------- 1 boinc boinc    475059 Jan 15 12:42 log.48215263._042534.job.log.1
[2026-01-15 12:42:36] -rw------- 1 boinc boinc       357 Jan 15 12:42 output.list
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc       620 Jan 15 12:42 runtime_log
[2026-01-15 12:42:36] -rw------- 1 boinc boinc    737280 Jan 15 12:42 result.tar.gz
[2026-01-15 12:42:36] -rw------- 1 boinc boinc       660 Jan 15 12:42 ipfKDmJmS08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzftKDmvnX5Tm.diag
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc      8917 Jan 15 12:42 runtime_log.err
[2026-01-15 12:42:36] -rw-r--r-- 1 boinc boinc     10847 Jan 15 12:42 stderr.txt
[2026-01-15 12:42:36] HITS file was successfully produced:
[2026-01-15 12:42:36] -rw------- 1 boinc boinc 145294548 Jan 15 12:41 shared/HITS.pool.root.1
[2026-01-15 12:42:36]  *** Contents of shared directory: ***
[2026-01-15 12:42:36] total 727808
[2026-01-15 12:42:36] -rw-r--r-- 2 boinc boinc 598619656 Jan 15 11:50 ATLAS.root_0
[2026-01-15 12:42:36] -rw-r--r-- 2 boinc boinc    592398 Jan 15 11:50 input.tar.gz
[2026-01-15 12:42:36] -rw-r--r-- 2 boinc boinc     15847 Jan 15 11:50 start_atlas.sh
[2026-01-15 12:42:36] -rw------- 1 boinc boinc 145294548 Jan 15 12:41 HITS.pool.root.1
[2026-01-15 12:42:36] -rw------- 1 boinc boinc    737280 Jan 15 12:42 result.tar.gz
12:42:37 (3775976): run_atlas exited; CPU time 8634.816730
12:42:37 (3775976): called boinc_finish(0)

</stderr_txt>
]]>

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