Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:05:44 (1896523): wrapper (7.7.26015): starting
11:05:44 (1896523): wrapper: running run_atlas (--nthreads 3)
[2026-01-15 11:05:44] Arguments: --nthreads 3
[2026-01-15 11:05:44] Threads: 3
[2026-01-15 11:05:44] Checking for CVMFS
[2026-01-15 11:05:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 11:05:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 11:05:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 11:05:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 11:05:44] 2.9.2.0 1053361 2068 85284 155163 3 9 22925257 36864001 0 130560 0 2228918 99.992 78677 18429 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 11:05:44] CVMFS is ok
[2026-01-15 11:05:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 11:05:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 11:05:44] Further information can be found at the LHC@home message board.
[2026-01-15 11:05:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 11:05:44] Checking for apptainer binary...
[2026-01-15 11:05:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 11:05:44] Running /usr/bin/apptainer --version
[2026-01-15 11:05:44] apptainer version 1.4.1-1.1
[2026-01-15 11:05:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 11:05:44] magicA246a
[2026-01-15 11:05:44] apptainer works
[2026-01-15 11:05:44] Set ATHENA_PROC_NUMBER=3
[2026-01-15 11:05:44] Set ATHENA_CORE_NUMBER=3
[2026-01-15 11:05:44] Starting ATLAS job with PandaID=6970289202
[2026-01-15 11:05:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 12:02:00]  *** The last 200 lines of the pilot log: ***
[2026-01-15 12:02:00] 2026-01-15 11:01:17,182 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,182 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,182 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,182 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,182 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,182 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,182 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,182 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,182 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,183 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,183 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,183 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,183 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,183 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 12:02:00] 2026-01-15 11:01:17,183 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,183 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 12:02:00] 2026-01-15 11:01:17,183 | INFO     | job 6970289202 has completed (purged errors)
[2026-01-15 12:02:00] 2026-01-15 11:01:17,183 | INFO     | overall cleanup function is called
[2026-01-15 12:02:00] 2026-01-15 11:01:18,189 | INFO     | --- collectZombieJob: --- 10, [1906688]
[2026-01-15 12:02:00] 2026-01-15 11:01:18,189 | INFO     | zombie collector waiting for pid 1906688
[2026-01-15 12:02:00] 2026-01-15 11:01:18,189 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 12:02:00] 2026-01-15 11:01:18,189 | INFO     | collected zombie processes
[2026-01-15 12:02:00] 2026-01-15 11:01:18,189 | INFO     | will attempt to kill all subprocesses of pid=1906688
[2026-01-15 12:02:00] 2026-01-15 11:01:18,248 | INFO     | process IDs to be killed: [1906688] (in reverse order)
[2026-01-15 12:02:00] 2026-01-15 11:01:18,277 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 12:02:00] 2026-01-15 11:01:18,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 12:02:00] 2026-01-15 11:01:18,279 | INFO     | did not find any defunct processes belonging to 1906688
[2026-01-15 12:02:00] 2026-01-15 11:01:18,280 | INFO     | did not find any defunct processes belonging to 1906688
[2026-01-15 12:02:00] 2026-01-15 11:01:18,281 | INFO     | ready for new job
[2026-01-15 12:02:00] 2026-01-15 11:01:18,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 12:02:00] 2026-01-15 11:01:18,281 | INFO     | ***************************************
[2026-01-15 12:02:00] 2026-01-15 11:01:18,282 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 12:02:00] 2026-01-15 11:01:18,282 | INFO     | ***************************************
[2026-01-15 12:02:00] 2026-01-15 11:01:18,282 | INFO     | 
[2026-01-15 12:02:00] 2026-01-15 11:01:18,282 | INFO     | architecture information:
[2026-01-15 12:02:00] 2026-01-15 11:01:18,282 | INFO     | executing command: cat /etc/os-release
[2026-01-15 12:02:00] 2026-01-15 11:01:18,290 | INFO     | cat /etc/os-release:
[2026-01-15 12:02:00] NAME="CentOS Linux"
[2026-01-15 12:02:00] VERSION="7 (Core)"
[2026-01-15 12:02:00] ID="centos"
[2026-01-15 12:02:00] ID_LIKE="rhel fedora"
[2026-01-15 12:02:00] VERSION_ID="7"
[2026-01-15 12:02:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 12:02:00] ANSI_COLOR="0;31"
[2026-01-15 12:02:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 12:02:00] HOME_URL="https://www.centos.org/"
[2026-01-15 12:02:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 12:02:00] 
[2026-01-15 12:02:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 12:02:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 12:02:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 12:02:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 12:02:00] 
[2026-01-15 12:02:00] 2026-01-15 11:01:18,291 | INFO     | ***************************************
[2026-01-15 12:02:00] 2026-01-15 11:01:18,794 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 12:02:00] 2026-01-15 11:01:18,805 | INFO     | sufficient remaining disk space (281448284160 B)
[2026-01-15 12:02:00] 2026-01-15 11:01:18,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 12:02:00] 2026-01-15 11:01:18,806 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 12:02:00] 2026-01-15 11:01:18,806 | INFO     | update_server=False
[2026-01-15 12:02:00] 2026-01-15 11:01:18,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 12:02:00] 2026-01-15 11:01:18,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:02:00] 2026-01-15 11:01:18,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 12:02:00] 2026-01-15 11:01:18,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:02:00] 2026-01-15 11:01:18,806 | INFO     | aborting loop
[2026-01-15 12:02:00] 2026-01-15 11:01:19,283 | INFO     | all data control threads have been joined
[2026-01-15 12:02:00] 2026-01-15 11:01:19,510 | INFO     | all job control threads have been joined
[2026-01-15 12:02:00] 2026-01-15 11:01:19,806 | INFO     | [job] retrieve thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:19,812 | INFO     | [job] queue monitor thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:19,812 | INFO     | [job] job monitor thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:20,133 | INFO     | all payload control threads have been joined
[2026-01-15 12:02:00] 2026-01-15 11:01:20,287 | INFO     | [data] control thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:20,410 | INFO     | [payload] failed_post thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:20,516 | INFO     | [job] control thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:20,546 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:20,628 | INFO     | [data] copytool_in thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:20,697 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:20,812 | INFO     | [data] copytool_out thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:21,077 | INFO     | [job] validate thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:21,139 | INFO     | [payload] control thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:21,157 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:21,217 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:21,279 | INFO     | [payload] validate_post thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:21,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 12:02:00] 2026-01-15 11:01:25,611 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 12:02:00] 2026-01-15 11:01:49,082 | INFO     | PID=1900245 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 12:02:00] 2026-01-15 11:01:49,082 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 12:02:00] 2026-01-15 11:01:49,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 12:02:00] 2026-01-15 11:01:49,082 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 12:02:00] 2026-01-15 11:01:53,660 | INFO     | [monitor] cgroup control has ended
[2026-01-15 12:02:00] 2026-01-15 11:01:55,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140075900843840)>', '<ExcThread(monitor, started 140075543271168)>']
[2026-01-15 12:02:00] 2026-01-15 11:01:56,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 12:02:00] 2026-01-15 11:01:56,117 | INFO     | [monitor] control thread has ended
[2026-01-15 12:02:00] 2026-01-15 11:02:00,174 | INFO     | all workflow threads have been joined
[2026-01-15 12:02:00] 2026-01-15 11:02:00,174 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 12:02:00] 2026-01-15 11:02:00,175 | INFO     | traces error code: 0
[2026-01-15 12:02:00] 2026-01-15 11:02:00,175 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 12:02:00] 2026-01-15 11:02:00,226 [wrapper] ==== pilot stdout END ====
[2026-01-15 12:02:00] 2026-01-15 11:02:00,229 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 12:02:00] 2026-01-15 11:02:00,231 [wrapper] pilotpid: 1900245
[2026-01-15 12:02:00] 2026-01-15 11:02:00,234 [wrapper] Pilot exit status: 0
[2026-01-15 12:02:00] 2026-01-15 11:02:00,241 [wrapper] pandaids: 6970289202
[2026-01-15 12:02:00] 2026-01-15 11:02:00,260 [wrapper] cleanup supervisor_pilot 1916657 1900246
[2026-01-15 12:02:00] 2026-01-15 11:02:00,263 [wrapper] Test setup, not cleaning
[2026-01-15 12:02:00] 2026-01-15 11:02:00,265 [wrapper] apfmon messages muted
[2026-01-15 12:02:00] 2026-01-15 11:02:00,268 [wrapper] ==== wrapper stdout END ====
[2026-01-15 12:02:00] 2026-01-15 11:02:00,270 [wrapper] ==== wrapper stderr END ====
[2026-01-15 12:02:00]  *** Error codes and diagnostics ***
[2026-01-15 12:02:00]     "exeErrorCode": 0,
[2026-01-15 12:02:00]     "exeErrorDiag": "",
[2026-01-15 12:02:00]     "pilotErrorCode": 0,
[2026-01-15 12:02:00]     "pilotErrorDiag": "",
[2026-01-15 12:02:00]  *** Listing of results directory ***
[2026-01-15 12:02:00] total 734060
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc    579449 Jan 15 05:50 pilot3.tar.gz
[2026-01-15 12:02:00] -rwx------ 1 boinc boinc     36322 Jan 15 05:54 runpilot2-wrapper.sh
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc      5112 Jan 15 05:54 queuedata.json
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc       100 Jan 15 11:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 12:02:00] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 11:05 run_atlas
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc       105 Jan 15 11:05 job.xml
[2026-01-15 12:02:00] -rw-r--r-- 2 boinc boinc 594046113 Jan 15 11:05 EVNT.32794306._001764.pool.root.1
[2026-01-15 12:02:00] -rw-r--r-- 2 boinc boinc    592409 Jan 15 11:05 input.tar.gz
[2026-01-15 12:02:00] -rw-r--r-- 2 boinc boinc     15847 Jan 15 11:05 start_atlas.sh
[2026-01-15 12:02:00] drwxrwx--x 2 boinc boinc      4096 Jan 15 11:05 shared
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc         0 Jan 15 11:05 boinc_setup_complete
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc      6447 Jan 15 11:05 init_data.xml
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc         0 Jan 15 11:05 boinc_lockfile
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc      2509 Jan 15 11:05 pandaJob.out
[2026-01-15 12:02:00] -rw------- 1 boinc boinc   1007757 Jan 15 11:05 agis_schedconf.cvmfs.json
[2026-01-15 12:02:00] -rw------- 1 boinc boinc   1516246 Jan 15 11:05 agis_ddmendpoints.agis.ALL.json
[2026-01-15 12:02:00] drwx------ 5 boinc boinc      4096 Jan 15 11:05 pilot3
[2026-01-15 12:02:00] -rw------- 1 boinc boinc 152205832 Jan 15 12:00 HITS.48215263._045313.pool.root.1
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc       529 Jan 15 12:01 boinc_task_state.xml
[2026-01-15 12:02:00] -rw------- 1 boinc boinc      1017 Jan 15 12:01 memory_monitor_summary.json
[2026-01-15 12:02:00] -rw------- 1 boinc boinc        95 Jan 15 12:01 pilot_heartbeat.json
[2026-01-15 12:02:00] -rw------- 1 boinc boinc    242591 Jan 15 12:01 log.48215263._045313.job.log.tgz.1
[2026-01-15 12:02:00] -rw------- 1 boinc boinc      7747 Jan 15 12:01 heartbeat.json
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc        26 Jan 15 12:01 wrapper_checkpoint.txt
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc      8192 Jan 15 12:01 boinc_mmap_file
[2026-01-15 12:02:00] -rw------- 1 boinc boinc      4752 Jan 15 12:02 pilotlog.txt
[2026-01-15 12:02:00] -rw------- 1 boinc boinc    506515 Jan 15 12:02 log.48215263._045313.job.log.1
[2026-01-15 12:02:00] -rw------- 1 boinc boinc       357 Jan 15 12:02 output.list
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc       620 Jan 15 12:02 runtime_log
[2026-01-15 12:02:00] -rw------- 1 boinc boinc    768000 Jan 15 12:02 result.tar.gz
[2026-01-15 12:02:00] -rw------- 1 boinc boinc       660 Jan 15 12:02 sT0NDmEYU08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmU5nKDm5pA3Km.diag
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc      8917 Jan 15 12:02 runtime_log.err
[2026-01-15 12:02:00] -rw-r--r-- 1 boinc boinc     12455 Jan 15 12:02 stderr.txt
[2026-01-15 12:02:00] HITS file was successfully produced:
[2026-01-15 12:02:00] -rw------- 1 boinc boinc 152205832 Jan 15 12:00 shared/HITS.pool.root.1
[2026-01-15 12:02:00]  *** Contents of shared directory: ***
[2026-01-15 12:02:00] total 730120
[2026-01-15 12:02:00] -rw-r--r-- 2 boinc boinc 594046113 Jan 15 11:05 ATLAS.root_0
[2026-01-15 12:02:00] -rw-r--r-- 2 boinc boinc    592409 Jan 15 11:05 input.tar.gz
[2026-01-15 12:02:00] -rw-r--r-- 2 boinc boinc     15847 Jan 15 11:05 start_atlas.sh
[2026-01-15 12:02:00] -rw------- 1 boinc boinc 152205832 Jan 15 12:00 HITS.pool.root.1
[2026-01-15 12:02:00] -rw------- 1 boinc boinc    768000 Jan 15 12:02 result.tar.gz
12:02:02 (1896523): run_atlas exited; CPU time 9366.230415
12:02:02 (1896523): called boinc_finish(0)

</stderr_txt>
]]>

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