Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:46:45 (2980907): wrapper (7.7.26015): starting
10:46:45 (2980907): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 10:46:45] Arguments: --nthreads 4
[2026-01-15 10:46:45] Threads: 4
[2026-01-15 10:46:45] Checking for CVMFS
[2026-01-15 10:46:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 10:46:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 10:46:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 10:46:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 10:46:45] 2.9.2.0 1861808 2140 95332 155162 0 57 33105186 36864000 0 130560 0 3001601 99.994 82967 12674 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 10:46:45] CVMFS is ok
[2026-01-15 10:46:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 10:46:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 10:46:45] Further information can be found at the LHC@home message board.
[2026-01-15 10:46:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 10:46:45] Checking for apptainer binary...
[2026-01-15 10:46:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 10:46:45] Running /usr/bin/apptainer --version
[2026-01-15 10:46:45] apptainer version 1.4.1-1.1
[2026-01-15 10:46:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 10:46:45] thA315b
[2026-01-15 10:46:45] apptainer works
[2026-01-15 10:46:45] Set ATHENA_PROC_NUMBER=4
[2026-01-15 10:46:45] Set ATHENA_CORE_NUMBER=4
[2026-01-15 10:46:45] Starting ATLAS job with PandaID=6970288651
[2026-01-15 10:46:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 11:28:00]  *** The last 200 lines of the pilot log: ***
[2026-01-15 11:28:00] 2026-01-15 10:27:28,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 11:28:00] 2026-01-15 10:27:28,385 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 11:28:00] 2026-01-15 10:27:28,385 | INFO     | job 6970288651 has completed (purged errors)
[2026-01-15 11:28:00] 2026-01-15 10:27:28,385 | INFO     | overall cleanup function is called
[2026-01-15 11:28:00] 2026-01-15 10:27:29,392 | INFO     | --- collectZombieJob: --- 10, [2991285]
[2026-01-15 11:28:00] 2026-01-15 10:27:29,392 | INFO     | zombie collector waiting for pid 2991285
[2026-01-15 11:28:00] 2026-01-15 10:27:29,392 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 11:28:00] 2026-01-15 10:27:29,392 | INFO     | collected zombie processes
[2026-01-15 11:28:00] 2026-01-15 10:27:29,393 | INFO     | will attempt to kill all subprocesses of pid=2991285
[2026-01-15 11:28:00] 2026-01-15 10:27:29,440 | INFO     | process IDs to be killed: [2991285] (in reverse order)
[2026-01-15 11:28:00] 2026-01-15 10:27:29,467 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 11:28:00] 2026-01-15 10:27:29,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 11:28:00] 2026-01-15 10:27:29,469 | INFO     | did not find any defunct processes belonging to 2991285
[2026-01-15 11:28:00] 2026-01-15 10:27:29,470 | INFO     | did not find any defunct processes belonging to 2991285
[2026-01-15 11:28:00] 2026-01-15 10:27:29,470 | INFO     | ready for new job
[2026-01-15 11:28:00] 2026-01-15 10:27:29,470 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 11:28:00] 2026-01-15 10:27:29,471 | INFO     | ***************************************
[2026-01-15 11:28:00] 2026-01-15 10:27:29,471 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 11:28:00] 2026-01-15 10:27:29,471 | INFO     | ***************************************
[2026-01-15 11:28:00] 2026-01-15 10:27:29,471 | INFO     | 
[2026-01-15 11:28:00] 2026-01-15 10:27:29,471 | INFO     | architecture information:
[2026-01-15 11:28:00] 2026-01-15 10:27:29,471 | INFO     | executing command: cat /etc/os-release
[2026-01-15 11:28:00] 2026-01-15 10:27:29,481 | INFO     | cat /etc/os-release:
[2026-01-15 11:28:00] NAME="CentOS Linux"
[2026-01-15 11:28:00] VERSION="7 (Core)"
[2026-01-15 11:28:00] ID="centos"
[2026-01-15 11:28:00] ID_LIKE="rhel fedora"
[2026-01-15 11:28:00] VERSION_ID="7"
[2026-01-15 11:28:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 11:28:00] ANSI_COLOR="0;31"
[2026-01-15 11:28:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 11:28:00] HOME_URL="https://www.centos.org/"
[2026-01-15 11:28:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 11:28:00] 
[2026-01-15 11:28:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 11:28:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 11:28:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 11:28:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 11:28:00] 
[2026-01-15 11:28:00] 2026-01-15 10:27:29,481 | INFO     | ***************************************
[2026-01-15 11:28:00] 2026-01-15 10:27:29,984 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 11:28:00] 2026-01-15 10:27:29,998 | INFO     | sufficient remaining disk space (325861769216 B)
[2026-01-15 11:28:00] 2026-01-15 10:27:29,998 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 11:28:00] 2026-01-15 10:27:29,998 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 11:28:00] 2026-01-15 10:27:29,998 | INFO     | update_server=False
[2026-01-15 11:28:00] 2026-01-15 10:27:29,998 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 11:28:00] 2026-01-15 10:27:29,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:28:00] 2026-01-15 10:27:30,210 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 11:28:00] 2026-01-15 10:27:30,210 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 11:28:00] 2026-01-15 10:27:30,210 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 11:28:00] 2026-01-15 10:27:30,210 | INFO     | will abort loop
[2026-01-15 11:28:00] 2026-01-15 10:27:30,238 | INFO     | all data control threads have been joined
[2026-01-15 11:28:00] 2026-01-15 10:27:30,854 | INFO     | all job control threads have been joined
[2026-01-15 11:28:00] 2026-01-15 10:27:31,004 | INFO     | [job] queue monitor thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,004 | INFO     | [job] retrieve thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,042 | INFO     | all payload control threads have been joined
[2026-01-15 11:28:00] 2026-01-15 10:27:31,216 | INFO     | [job] job monitor thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,221 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,244 | INFO     | [data] control thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 11:28:00] 2026-01-15 10:27:31,444 | INFO     | [data] copytool_in thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,644 | INFO     | [payload] validate_post thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,701 | INFO     | [job] validate thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,759 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,764 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:31,798 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 11:28:00] 2026-01-15 10:27:31,859 | INFO     | [job] control thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:32,048 | INFO     | [payload] control thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:32,329 | INFO     | [payload] failed_post thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:33,277 | INFO     | [data] copytool_out thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:35,805 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:40,650 | INFO     | job.realtimelogging is not enabled
[2026-01-15 11:28:00] 2026-01-15 10:27:41,655 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 11:28:00] 2026-01-15 10:27:54,661 | INFO     | [monitor] cgroup control has ended
[2026-01-15 11:28:00] 2026-01-15 10:27:55,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140551821104960)>', '<ExcThread(monitor, started 140551051536128)>']
[2026-01-15 11:28:00] 2026-01-15 10:28:00,178 | INFO     | all workflow threads have been joined
[2026-01-15 11:28:00] 2026-01-15 10:28:00,178 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 11:28:00] 2026-01-15 10:28:00,178 | INFO     | traces error code: 0
[2026-01-15 11:28:00] 2026-01-15 10:28:00,179 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 11:28:00] 2026-01-15 10:28:00,424 | INFO     | PID=2984708 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 11:28:00] 2026-01-15 10:28:00,424 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 11:28:00] 2026-01-15 10:28:00,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 11:28:00] 2026-01-15 10:28:00,424 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 11:28:00] 2026-01-15 10:28:00,424 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 11:28:00] 2026-01-15 10:28:00,424 | INFO     | [monitor] control thread has ended
[2026-01-15 11:28:00] 2026-01-15 10:28:00,474 [wrapper] ==== pilot stdout END ====
[2026-01-15 11:28:00] 2026-01-15 10:28:00,476 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 11:28:00] 2026-01-15 10:28:00,479 [wrapper] pilotpid: 2984708
[2026-01-15 11:28:00] 2026-01-15 10:28:00,482 [wrapper] Pilot exit status: 0
[2026-01-15 11:28:00] 2026-01-15 10:28:00,490 [wrapper] pandaids: 6970288651
[2026-01-15 11:28:00] 2026-01-15 10:28:00,508 [wrapper] cleanup supervisor_pilot 2998495 2984709
[2026-01-15 11:28:00] 2026-01-15 10:28:00,511 [wrapper] Test setup, not cleaning
[2026-01-15 11:28:00] 2026-01-15 10:28:00,513 [wrapper] apfmon messages muted
[2026-01-15 11:28:00] 2026-01-15 10:28:00,516 [wrapper] ==== wrapper stdout END ====
[2026-01-15 11:28:00] 2026-01-15 10:28:00,518 [wrapper] ==== wrapper stderr END ====
[2026-01-15 11:28:00]  *** Error codes and diagnostics ***
[2026-01-15 11:28:00]     "exeErrorCode": 0,
[2026-01-15 11:28:00]     "exeErrorDiag": "",
[2026-01-15 11:28:00]     "pilotErrorCode": 0,
[2026-01-15 11:28:00]     "pilotErrorDiag": "",
[2026-01-15 11:28:00]  *** Listing of results directory ***
[2026-01-15 11:28:00] total 733000
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc    579449 Jan 15 05:50 pilot3.tar.gz
[2026-01-15 11:28:00] -rwx------ 1 boinc boinc     36322 Jan 15 05:54 runpilot2-wrapper.sh
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc      5112 Jan 15 05:54 queuedata.json
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc       100 Jan 15 10:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 11:28:00] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 10:46 run_atlas
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc       105 Jan 15 10:46 job.xml
[2026-01-15 11:28:00] -rw-r--r-- 2 boinc boinc 598087038 Jan 15 10:46 EVNT.32794306._001748.pool.root.1
[2026-01-15 11:28:00] -rw-r--r-- 2 boinc boinc    592400 Jan 15 10:46 input.tar.gz
[2026-01-15 11:28:00] -rw-r--r-- 2 boinc boinc     15847 Jan 15 10:46 start_atlas.sh
[2026-01-15 11:28:00] drwxrwx--x 2 boinc boinc      4096 Jan 15 10:46 shared
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc         0 Jan 15 10:46 boinc_setup_complete
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc      6443 Jan 15 10:46 init_data.xml
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc         0 Jan 15 10:46 boinc_lockfile
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc      2509 Jan 15 10:46 pandaJob.out
[2026-01-15 11:28:00] -rw------- 1 boinc boinc   1007757 Jan 15 10:46 agis_schedconf.cvmfs.json
[2026-01-15 11:28:00] -rw------- 1 boinc boinc   1516246 Jan 15 10:46 agis_ddmendpoints.agis.ALL.json
[2026-01-15 11:28:00] drwx------ 5 boinc boinc      4096 Jan 15 10:46 pilot3
[2026-01-15 11:28:00] -rw------- 1 boinc boinc        95 Jan 15 11:27 pilot_heartbeat.json
[2026-01-15 11:28:00] -rw------- 1 boinc boinc 147319608 Jan 15 11:27 HITS.48215263._044913.pool.root.1
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc       529 Jan 15 11:27 boinc_task_state.xml
[2026-01-15 11:28:00] -rw------- 1 boinc boinc      1016 Jan 15 11:27 memory_monitor_summary.json
[2026-01-15 11:28:00] -rw------- 1 boinc boinc    247931 Jan 15 11:27 log.48215263._044913.job.log.tgz.1
[2026-01-15 11:28:00] -rw------- 1 boinc boinc      7749 Jan 15 11:27 heartbeat.json
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc      8192 Jan 15 11:27 boinc_mmap_file
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc        26 Jan 15 11:27 wrapper_checkpoint.txt
[2026-01-15 11:28:00] -rw------- 1 boinc boinc       747 Jan 15 11:28 pilotlog.txt
[2026-01-15 11:28:00] -rw------- 1 boinc boinc    384567 Jan 15 11:28 log.48215263._044913.job.log.1
[2026-01-15 11:28:00] -rw------- 1 boinc boinc       357 Jan 15 11:28 output.list
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc       620 Jan 15 11:28 runtime_log
[2026-01-15 11:28:00] -rw------- 1 boinc boinc    655360 Jan 15 11:28 result.tar.gz
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc      8902 Jan 15 11:28 runtime_log.err
[2026-01-15 11:28:00] -rw------- 1 boinc boinc       657 Jan 15 11:28 NX1KDm3XU08n9Rq4apOajLDm4fhM0noT9bVo0NGKDm83nKDmoxB5qn.diag
[2026-01-15 11:28:00] -rw-r--r-- 1 boinc boinc     11341 Jan 15 11:28 stderr.txt
[2026-01-15 11:28:00] HITS file was successfully produced:
[2026-01-15 11:28:00] -rw------- 1 boinc boinc 147319608 Jan 15 11:27 shared/HITS.pool.root.1
[2026-01-15 11:28:00]  *** Contents of shared directory: ***
[2026-01-15 11:28:00] total 729184
[2026-01-15 11:28:00] -rw-r--r-- 2 boinc boinc 598087038 Jan 15 10:46 ATLAS.root_0
[2026-01-15 11:28:00] -rw-r--r-- 2 boinc boinc    592400 Jan 15 10:46 input.tar.gz
[2026-01-15 11:28:00] -rw-r--r-- 2 boinc boinc     15847 Jan 15 10:46 start_atlas.sh
[2026-01-15 11:28:00] -rw------- 1 boinc boinc 147319608 Jan 15 11:27 HITS.pool.root.1
[2026-01-15 11:28:00] -rw------- 1 boinc boinc    655360 Jan 15 11:28 result.tar.gz
11:28:02 (2980907): run_atlas exited; CPU time 8854.141131
11:28:02 (2980907): called boinc_finish(0)

</stderr_txt>
]]>

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