Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:48:53 (2807519): wrapper (7.7.26015): starting
06:48:53 (2807519): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 06:48:53] Arguments: --nthreads 12
[2026-01-16 06:48:53] Threads: 12
[2026-01-16 06:48:53] Checking for CVMFS
[2026-01-16 06:48:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 06:48:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 06:48:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 06:48:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 06:48:54] 2.13.3.0 40677 10136 64976 155198 1 236 3980275 4096001 18957 130560 0 79906259 99.981 1141009 231 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 06:48:54] CVMFS is ok
[2026-01-16 06:48:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 06:48:54] Checking for apptainer binary...
[2026-01-16 06:48:54] apptainer is not installed, using version from CVMFS
[2026-01-16 06:48:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 06:48:56] epyc7v12
[2026-01-16 06:48:56] apptainer works
[2026-01-16 06:48:56] Set ATHENA_PROC_NUMBER=12
[2026-01-16 06:48:56] Set ATHENA_CORE_NUMBER=12
[2026-01-16 06:48:56] Starting ATLAS job with PandaID=6970290624
[2026-01-16 06:48:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31423/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 08:21:50]  *** The last 200 lines of the pilot log: ***
[2026-01-16 08:21:50] 2026-01-16 08:20:59,950 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-16 08:21:50] 2026-01-16 08:20:59,950 | INFO     | summary of transferred files:
[2026-01-16 08:21:50] 2026-01-16 08:20:59,950 | INFO     |  -- lfn=log.48215263._045880.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 08:21:50] 2026-01-16 08:20:59,951 | INFO     | stage-out finished correctly
[2026-01-16 08:21:50] 2026-01-16 08:21:00,955 | WARNING  | process 2821418 can no longer be monitored (due to stat problems) - aborting
[2026-01-16 08:21:50] 2026-01-16 08:21:00,956 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970290624/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 08:21:50] 2026-01-16 08:21:01,933 | INFO     | time since job start (5492s) is within the limit (349056.0s)
[2026-01-16 08:21:50] 2026-01-16 08:21:02,162 | INFO     | number of running child processes to parent process 2821418: 1
[2026-01-16 08:21:50] 2026-01-16 08:21:02,163 | INFO     | maximum number of monitored processes: 6
[2026-01-16 08:21:50] 2026-01-16 08:21:02,326 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 08:21:50] 2026-01-16 08:21:02,483 | INFO     | job 6970290624 has state=finished
[2026-01-16 08:21:50] 2026-01-16 08:21:02,483 | INFO     | preparing for final server update for job 6970290624 in state='finished'
[2026-01-16 08:21:50] 2026-01-16 08:21:02,484 | INFO     | this job has now completed (state=finished)
[2026-01-16 08:21:50] 2026-01-16 08:21:02,484 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 08:21:50] 2026-01-16 08:21:02,484 | INFO     | log transfer has been attempted: DONE
[2026-01-16 08:21:50] 2026-01-16 08:21:02,484 | INFO     | job 6970290624 has finished - writing final server update
[2026-01-16 08:21:50] 2026-01-16 08:21:02,484 | INFO     | total number of processed events: 400 (read)
[2026-01-16 08:21:50] 2026-01-16 08:21:02,485 | INFO     | executing command: lscpu
[2026-01-16 08:21:50] 2026-01-16 08:21:02,641 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 08:21:50] 2026-01-16 08:21:03,942 | INFO     | time since job start (5494s) is within the limit (349056.0s)
[2026-01-16 08:21:50] 2026-01-16 08:21:04,669 | INFO     | monitor loop #359: job 0:6970290624 is in state 'finished'
[2026-01-16 08:21:50] 2026-01-16 08:21:04,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 08:21:50] 2026-01-16 08:21:05,947 | INFO     | time since job start (5496s) is within the limit (349056.0s)
[2026-01-16 08:21:50] 2026-01-16 08:21:07,172 | INFO     | monitor loop #360: job 0:6970290624 is in state 'finished'
[2026-01-16 08:21:50] 2026-01-16 08:21:07,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 08:21:50] 2026-01-16 08:21:07,955 | INFO     | time since job start (5498s) is within the limit (349056.0s)
[2026-01-16 08:21:50] 2026-01-16 08:21:09,677 | INFO     | monitor loop #361: job 0:6970290624 is in state 'finished'
[2026-01-16 08:21:50] 2026-01-16 08:21:09,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 08:21:50] 2026-01-16 08:21:10,435 | INFO     | PID=2811779 has CPU usage=14.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-16 08:21:50] 2026-01-16 08:21:10,435 | INFO     | .. there are 21 such processes running
[2026-01-16 08:21:50] 2026-01-16 08:21:11,436 | INFO     | time since job start (5502s) is within the limit (349056.0s)
[2026-01-16 08:21:50] 2026-01-16 08:21:12,180 | INFO     | monitor loop #362: job 0:6970290624 is in state 'finished'
[2026-01-16 08:21:50] 2026-01-16 08:21:12,180 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 08:21:50] 2026-01-16 08:21:13,442 | INFO     | time since job start (5504s) is within the limit (349056.0s)
[2026-01-16 08:21:50] 2026-01-16 08:21:14,684 | INFO     | monitor loop #363: job 0:6970290624 is in state 'finished'
[2026-01-16 08:21:50] 2026-01-16 08:21:14,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 08:21:50] 2026-01-16 08:21:15,456 | INFO     | time since job start (5506s) is within the limit (349056.0s)
[2026-01-16 08:21:50] 2026-01-16 08:21:15,796 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 08:21:50] 2026-01-16 08:21:15,849 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2401.9393984375006
[2026-01-16 08:21:50] 2026-01-16 08:21:15,948 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6970290624/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 08:21:50] 2026-01-16 08:21:15,948 | INFO     | extracted standard info from prmon json
[2026-01-16 08:21:50] 2026-01-16 08:21:15,949 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 08:21:50] 2026-01-16 08:21:15,949 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 08:21:50] 2026-01-16 08:21:15,952 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 08:21:50] 2026-01-16 08:21:15,952 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 08:21:50] 2026-01-16 08:21:15,955 | INFO     | fitting pss+swap vs Time
[2026-01-16 08:21:50] 2026-01-16 08:21:15,956 | INFO     | sum of square deviations: 170944600.5
[2026-01-16 08:21:50] 2026-01-16 08:21:15,963 | INFO     | sum of deviations: 5426948448.0
[2026-01-16 08:21:50] 2026-01-16 08:21:15,963 | INFO     | mean x: 1768549015.5
[2026-01-16 08:21:50] 2026-01-16 08:21:15,964 | INFO     | mean y: 2692081.2682926827
[2026-01-16 08:21:50] 2026-01-16 08:21:15,964 | INFO     | intersect: -56143125375.42085
[2026-01-16 08:21:50] 2026-01-16 08:21:15,964 | INFO     | chi2: 0.1446379618870603
[2026-01-16 08:21:50] 2026-01-16 08:21:15,964 | INFO     | current memory leak: 31.75 B/s (using 82 data points, chi2=0.14)
[2026-01-16 08:21:50] 2026-01-16 08:21:15,964 | INFO     | could have reported an average CPU frequency of 2398 MHz (7 samples)
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | ..............................
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | . Timing measurements:
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | . get job = 0 s
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | . initial setup = 2 s
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | . payload setup = 17 s
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | . stage-in = 0 s
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | . payload execution = 5429 s
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | . stage-out = 1 s
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | . log creation = 0 s
[2026-01-16 08:21:50] 2026-01-16 08:21:15,965 | INFO     | ..............................
[2026-01-16 08:21:50] 2026-01-16 08:21:16,248 | INFO     | 
[2026-01-16 08:21:50] 2026-01-16 08:21:16,248 | INFO     | job summary report
[2026-01-16 08:21:50] 2026-01-16 08:21:16,248 | INFO     | --------------------------------------------------
[2026-01-16 08:21:50] 2026-01-16 08:21:16,248 | INFO     | PanDA job id: 6970290624
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | task id: 48215263
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | errors: (none)
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | pilot state: finished 
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | transexitcode: 0
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | exeerrorcode: 0
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | exeerrordiag: 
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | exitcode: 0
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | exitmsg: OK
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | cpuconsumptiontime: 29506 s
[2026-01-16 08:21:50] 2026-01-16 08:21:16,249 | INFO     | nevents: 400
[2026-01-16 08:21:50] 2026-01-16 08:21:16,250 | INFO     | neventsw: 0
[2026-01-16 08:21:50] 2026-01-16 08:21:16,250 | INFO     | pid: 2821418
[2026-01-16 08:21:50] 2026-01-16 08:21:16,250 | INFO     | pgrp: 2821418
[2026-01-16 08:21:50] 2026-01-16 08:21:16,250 | INFO     | corecount: 12
[2026-01-16 08:21:50] 2026-01-16 08:21:16,250 | INFO     | event service: False
[2026-01-16 08:21:50] 2026-01-16 08:21:16,250 | INFO     | sizes: {0: 2283747, 1: 2283831, 2: 2284002, 13: 2284030, 16: 2284348, 23: 2284376, 5451: 2311148, 5452: 2311147, 5454: 2320247, 5456: 2320303, 5470: 2320497}
[2026-01-16 08:21:50] 2026-01-16 08:21:16,250 | INFO     | --------------------------------------------------
[2026-01-16 08:21:50] 2026-01-16 08:21:16,250 | INFO     | 
[2026-01-16 08:21:50] 2026-01-16 08:21:16,250 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 08:21:50] 2026-01-16 08:21:16,329 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,329 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,329 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,329 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,333 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,333 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,333 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,333 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 08:21:50] 2026-01-16 08:21:16,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,333 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 08:21:50] 2026-01-16 08:21:16,333 | INFO     | job 6970290624 has completed (purged errors)
[2026-01-16 08:21:50] 2026-01-16 08:21:16,334 | INFO     | overall cleanup function is called
[2026-01-16 08:21:50] 2026-01-16 08:21:17,352 | INFO     | --- collectZombieJob: --- 10, [2821418]
[2026-01-16 08:21:50] 2026-01-16 08:21:17,352 | INFO     | zombie collector waiting for pid 2821418
[2026-01-16 08:21:50] 2026-01-16 08:21:17,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 08:21:50] 2026-01-16 08:21:17,352 | INFO     | collected zombie processes
[2026-01-16 08:21:50] 2026-01-16 08:21:17,353 | INFO     | will attempt to kill all subprocesses of pid=2821418
[2026-01-16 08:21:50] 2026-01-16 08:21:18,617 | INFO     | process IDs to be killed: [2821418] (in reverse order)
[2026-01-16 08:21:50] 2026-01-16 08:21:19,097 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 08:21:50] 2026-01-16 08:21:19,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 08:21:50] 2026-01-16 08:21:19,117 | INFO     | did not find any defunct processes belonging to 2821418
[2026-01-16 08:21:50] 2026-01-16 08:21:19,141 | INFO     | did not find any defunct processes belonging to 2821418
[2026-01-16 08:21:50] 2026-01-16 08:21:19,141 | INFO     | ready for new job
[2026-01-16 08:21:50] 2026-01-16 08:21:19,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 08:21:50] 2026-01-16 08:21:19,147 | INFO     | ***************************************
[2026-01-16 08:21:50] 2026-01-16 08:21:19,147 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 08:21:50] 2026-01-16 08:21:19,147 | INFO     | ***************************************
[2026-01-16 08:21:50] 2026-01-16 08:21:19,148 | INFO     | 
[2026-01-16 08:21:50] 2026-01-16 08:21:19,167 | INFO     | architecture information:
[2026-01-16 08:21:50] 2026-01-16 08:21:19,170 | INFO     | executing command: cat /etc/os-release
[2026-01-16 08:21:50] 2026-01-16 08:21:19,214 | INFO     | cat /etc/os-release:
[2026-01-16 08:21:50] NAME="CentOS Linux"
[2026-01-16 08:21:50] VERSION="7 (Core)"
[2026-01-16 08:21:50] ID="centos"
[2026-01-16 08:21:50] ID_LIKE="rhel fedora"
[2026-01-16 08:21:50] VERSION_ID="7"
[2026-01-16 08:21:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 08:21:50] ANSI_COLOR="0;31"
[2026-01-16 08:21:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 08:21:50] HOME_URL="https://www.centos.org/"
[2026-01-16 08:21:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 08:21:50] 
[2026-01-16 08:21:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 08:21:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 08:21:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 08:21:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 08:21:50] 
[2026-01-16 08:21:50] 2026-01-16 08:21:19,214 | INFO     | ***************************************
[2026-01-16 08:21:50] 2026-01-16 08:21:19,718 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 08:21:50] 2026-01-16 08:21:19,760 | INFO     | sufficient remaining disk space (259891658752 B)
[2026-01-16 08:21:50] 2026-01-16 08:21:19,762 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 08:21:50] 2026-01-16 08:21:19,762 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 08:21:50] 2026-01-16 08:21:19,763 | INFO     | update_server=False
[2026-01-16 08:21:50] 2026-01-16 08:21:19,763 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 08:21:50] 2026-01-16 08:21:19,849 | INFO     | all job control threads have been joined
[2026-01-16 08:21:50] 2026-01-16 08:21:20,001 | INFO     | all data control threads have been joined
[2026-01-16 08:21:50] 2026-01-16 08:21:20,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 08:21:50] 2026-01-16 08:21:20,702 | INFO     | aborting loop
[2026-01-16 08:21:50] 2026-01-16 08:21:20,747 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 08:21:50] 2026-01-16 08:21:20,767 | INFO     | [job] retrieve thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:20,854 | INFO     | [job] control thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:20,943 | INFO     | [payload] failed_post thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:21,006 | INFO     | [data] control thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:21,086 | INFO     | all payload control threads have been joined
[2026-01-16 08:21:50] 2026-01-16 08:21:21,234 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:21,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 08:21:50] 2026-01-16 08:21:21,411 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:21,654 | INFO     | [payload] validate_post thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:21,707 | INFO     | [job] job monitor thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:21,736 | INFO     | [job] validate thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:22,019 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 08:21:50] 2026-01-16 08:21:22,091 | INFO     | [payload] control thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:22,213 | INFO     | [data] copytool_in thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:22,217 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:22,263 | INFO     | [job] queue monitor thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:22,752 | INFO     | [data] copytool_out thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:26,027 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:30,637 | INFO     | job.realtimelogging is not enabled
[2026-01-16 08:21:50] 2026-01-16 08:21:31,642 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 08:21:50] 2026-01-16 08:21:37,843 | INFO     | [monitor] cgroup control has ended
[2026-01-16 08:21:50] 2026-01-16 08:21:39,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124023101282112)>', '<ExcThread(monitor, started 124022331266816)>']
[2026-01-16 08:21:50] 2026-01-16 08:21:44,317 | INFO     | all workflow threads have been joined
[2026-01-16 08:21:50] 2026-01-16 08:21:44,317 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 08:21:50] 2026-01-16 08:21:44,318 | INFO     | traces error code: 0
[2026-01-16 08:21:50] 2026-01-16 08:21:44,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 08:21:50] 2026-01-16 08:21:49,887 | INFO     | PID=2811779 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 08:21:50] 2026-01-16 08:21:49,887 | INFO     | .. there are 22 such processes running
[2026-01-16 08:21:50] 2026-01-16 08:21:49,891 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 08:21:50] 2026-01-16 08:21:49,891 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 08:21:50] 2026-01-16 08:21:49,891 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 08:21:50] 2026-01-16 08:21:49,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 08:21:50] 2026-01-16 08:21:49,892 | INFO     | [monitor] control thread has ended
[2026-01-16 08:21:50] 2026-01-16 08:21:50,313 [wrapper] ==== pilot stdout END ====
[2026-01-16 08:21:50] 2026-01-16 08:21:50,319 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 08:21:50] 2026-01-16 08:21:50,326 [wrapper] pilotpid: 2811779
[2026-01-16 08:21:50] 2026-01-16 08:21:50,335 [wrapper] Pilot exit status: 0
[2026-01-16 08:21:50] 2026-01-16 08:21:50,366 [wrapper] pandaids: 6970290624
[2026-01-16 08:21:50] 2026-01-16 08:21:50,646 [wrapper] cleanup supervisor_pilot 3250438 2811780
[2026-01-16 08:21:50] 2026-01-16 08:21:50,654 [wrapper] Test setup, not cleaning
[2026-01-16 08:21:50] 2026-01-16 08:21:50,668 [wrapper] apfmon messages muted
[2026-01-16 08:21:50] 2026-01-16 08:21:50,675 [wrapper] ==== wrapper stdout END ====
[2026-01-16 08:21:50] 2026-01-16 08:21:50,686 [wrapper] ==== wrapper stderr END ====
[2026-01-16 08:21:50]  *** Error codes and diagnostics ***
[2026-01-16 08:21:50]     "exeErrorCode": 0,
[2026-01-16 08:21:50]     "exeErrorDiag": "",
[2026-01-16 08:21:50]     "pilotErrorCode": 0,
[2026-01-16 08:21:50]     "pilotErrorDiag": "",
[2026-01-16 08:21:50]  *** Listing of results directory ***
[2026-01-16 08:21:50] total 736660
[2026-01-16 08:21:50] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:50 pilot3.tar.gz
[2026-01-16 08:21:50] -rwx------ 1 boinc boinc     36322 Jan 15 04:52 runpilot2-wrapper.sh
[2026-01-16 08:21:50] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:54 queuedata.json
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc       100 Jan 16 06:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 08:21:50] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 06:48 run_atlas
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc       105 Jan 16 06:48 job.xml
[2026-01-16 08:21:50] -rw-r--r-- 2 boinc boinc 597188455 Jan 16 06:48 EVNT.32794306._001787.pool.root.1
[2026-01-16 08:21:50] -rw-r--r-- 2 boinc boinc     15847 Jan 16 06:48 start_atlas.sh
[2026-01-16 08:21:50] drwxrwx--x 2 boinc boinc      4096 Jan 16 06:48 shared
[2026-01-16 08:21:50] -rw-r--r-- 2 boinc boinc    592409 Jan 16 06:48 input.tar.gz
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 06:48 init_data.xml
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc         0 Jan 16 06:48 boinc_setup_complete
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc         0 Jan 16 06:48 boinc_lockfile
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc      2508 Jan 16 06:48 pandaJob.out
[2026-01-16 08:21:50] -rw------- 1 boinc boinc   1004075 Jan 16 06:49 agis_schedconf.cvmfs.json
[2026-01-16 08:21:50] -rw------- 1 boinc boinc   1516246 Jan 16 06:49 agis_ddmendpoints.agis.ALL.json
[2026-01-16 08:21:50] drwx------ 5 boinc boinc      4096 Jan 16 06:49 pilot3
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc       531 Jan 16 08:20 boinc_task_state.xml
[2026-01-16 08:21:50] -rw------- 1 boinc boinc 150891869 Jan 16 08:20 HITS.48215263._045880.pool.root.1
[2026-01-16 08:21:50] -rw------- 1 boinc boinc      1024 Jan 16 08:20 memory_monitor_summary.json
[2026-01-16 08:21:50] -rw------- 1 boinc boinc    398677 Jan 16 08:20 log.48215263._045880.job.log.tgz.1
[2026-01-16 08:21:50] -rw------- 1 boinc boinc      7731 Jan 16 08:21 heartbeat.json
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc        27 Jan 16 08:21 wrapper_checkpoint.txt
[2026-01-16 08:21:50] -rw------- 1 boinc boinc       823 Jan 16 08:21 pilotlog.txt
[2026-01-16 08:21:50] -rw------- 1 boinc boinc        95 Jan 16 08:21 pilot_heartbeat.json
[2026-01-16 08:21:50] -rw------- 1 boinc boinc    769487 Jan 16 08:21 log.48215263._045880.job.log.1
[2026-01-16 08:21:50] -rw------- 1 boinc boinc       357 Jan 16 08:21 output.list
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc       620 Jan 16 08:21 runtime_log
[2026-01-16 08:21:50] -rw------- 1 boinc boinc   1187840 Jan 16 08:21 result.tar.gz
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 08:21 runtime_log.err
[2026-01-16 08:21:50] -rw------- 1 boinc boinc       652 Jan 16 08:21 3ZoMDm9VU08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm19tKDmZA0w4n.diag
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 08:21 boinc_mmap_file
[2026-01-16 08:21:50] -rw-rw-r-- 1 boinc boinc     22182 Jan 16 08:21 stderr.txt
[2026-01-16 08:21:51] HITS file was successfully produced:
[2026-01-16 08:21:51] -rw------- 1 boinc boinc 150891869 Jan 16 08:20 shared/HITS.pool.root.1
[2026-01-16 08:21:51]  *** Contents of shared directory: ***
[2026-01-16 08:21:51] total 732312
[2026-01-16 08:21:51] -rw-r--r-- 2 boinc boinc 597188455 Jan 16 06:48 ATLAS.root_0
[2026-01-16 08:21:51] -rw-r--r-- 2 boinc boinc     15847 Jan 16 06:48 start_atlas.sh
[2026-01-16 08:21:51] -rw-r--r-- 2 boinc boinc    592409 Jan 16 06:48 input.tar.gz
[2026-01-16 08:21:51] -rw------- 1 boinc boinc 150891869 Jan 16 08:20 HITS.pool.root.1
[2026-01-16 08:21:51] -rw------- 1 boinc boinc   1187840 Jan 16 08:21 result.tar.gz
08:21:52 (2807519): run_atlas exited; CPU time 29822.185499
08:21:52 (2807519): called boinc_finish(0)

</stderr_txt>
]]>

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