Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:48:40 (3701775): wrapper (7.7.26015): starting
09:48:40 (3701775): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 09:48:40] Arguments: --nthreads 12
[2026-01-16 09:48:40] Threads: 12
[2026-01-16 09:48:40] Checking for CVMFS
[2026-01-16 09:48:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 09:48:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 09:48:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 09:48:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 09:48:42] 2.13.3.0 40677 10316 73996 155202 1 236 3993618 4096001 18769 130560 0 82395506 99.981 1146452 231 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 09:48:42] CVMFS is ok
[2026-01-16 09:48:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 09:48:42] Checking for apptainer binary...
[2026-01-16 09:48:42] apptainer is not installed, using version from CVMFS
[2026-01-16 09:48:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 09:48:44] epyc7v12
[2026-01-16 09:48:44] apptainer works
[2026-01-16 09:48:44] Set ATHENA_PROC_NUMBER=12
[2026-01-16 09:48:44] Set ATHENA_CORE_NUMBER=12
[2026-01-16 09:48:44] Starting ATLAS job with PandaID=6970394144
[2026-01-16 09:48:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31423/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 11:26:33]  *** The last 200 lines of the pilot log: ***
[2026-01-16 11:26:33] 2026-01-16 11:25:30,743 | INFO     | stage-out finished correctly
[2026-01-16 11:26:33] 2026-01-16 11:25:30,774 | INFO     | time since job start (5774s) is within the limit (349056.0s)
[2026-01-16 11:26:33] 2026-01-16 11:25:31,727 | INFO     | monitor loop #378: job 0:6970394144 is in state 'finished'
[2026-01-16 11:26:33] 2026-01-16 11:25:31,727 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:26:33] 2026-01-16 11:25:32,792 | INFO     | time since job start (5776s) is within the limit (349056.0s)
[2026-01-16 11:26:33] 2026-01-16 11:25:33,152 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 11:26:33] 2026-01-16 11:25:33,367 | INFO     | job 6970394144 has state=finished
[2026-01-16 11:26:33] 2026-01-16 11:25:33,367 | INFO     | preparing for final server update for job 6970394144 in state='finished'
[2026-01-16 11:26:33] 2026-01-16 11:25:33,997 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-16 11:26:33] 2026-01-16 11:25:33,998 | INFO     | this job has now completed (state=finished)
[2026-01-16 11:26:33] 2026-01-16 11:25:33,998 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 11:26:33] 2026-01-16 11:25:33,998 | INFO     | log transfer has been attempted: DONE
[2026-01-16 11:26:33] 2026-01-16 11:25:33,998 | INFO     | job 6970394144 has finished - writing final server update
[2026-01-16 11:26:33] 2026-01-16 11:25:33,999 | INFO     | total number of processed events: 400 (read)
[2026-01-16 11:26:33] 2026-01-16 11:25:34,001 | INFO     | executing command: lscpu
[2026-01-16 11:26:33] 2026-01-16 11:25:34,144 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 11:26:33] 2026-01-16 11:25:34,231 | INFO     | monitor loop #379: job 0:6970394144 is in state 'finished'
[2026-01-16 11:26:33] 2026-01-16 11:25:34,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:26:33] 2026-01-16 11:25:34,797 | INFO     | time since job start (5778s) is within the limit (349056.0s)
[2026-01-16 11:26:33] 2026-01-16 11:25:36,736 | INFO     | monitor loop #380: job 0:6970394144 is in state 'finished'
[2026-01-16 11:26:33] 2026-01-16 11:25:36,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:26:33] 2026-01-16 11:25:36,802 | INFO     | time since job start (5780s) is within the limit (349056.0s)
[2026-01-16 11:26:33] 2026-01-16 11:25:38,807 | INFO     | time since job start (5782s) is within the limit (349056.0s)
[2026-01-16 11:26:33] 2026-01-16 11:25:39,241 | INFO     | monitor loop #381: job 0:6970394144 is in state 'finished'
[2026-01-16 11:26:33] 2026-01-16 11:25:39,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:26:33] 2026-01-16 11:25:41,213 | INFO     | PID=3706691 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-16 11:26:33] 2026-01-16 11:25:41,213 | INFO     | .. there are 22 such processes running
[2026-01-16 11:26:33] 2026-01-16 11:25:41,744 | INFO     | monitor loop #382: job 0:6970394144 is in state 'finished'
[2026-01-16 11:26:33] 2026-01-16 11:25:41,744 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:26:33] 2026-01-16 11:25:42,215 | INFO     | time since job start (5786s) is within the limit (349056.0s)
[2026-01-16 11:26:33] 2026-01-16 11:25:44,221 | INFO     | time since job start (5788s) is within the limit (349056.0s)
[2026-01-16 11:26:33] 2026-01-16 11:25:44,247 | INFO     | monitor loop #383: job 0:6970394144 is in state 'finished'
[2026-01-16 11:26:33] 2026-01-16 11:25:44,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:26:33] 2026-01-16 11:25:46,226 | INFO     | time since job start (5790s) is within the limit (349056.0s)
[2026-01-16 11:26:33] 2026-01-16 11:25:46,750 | INFO     | monitor loop #384: job 0:6970394144 is in state 'finished'
[2026-01-16 11:26:33] 2026-01-16 11:25:46,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:26:33] 2026-01-16 11:25:47,629 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 11:26:33] 2026-01-16 11:25:47,675 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2408.5827734375002
[2026-01-16 11:26:33] 2026-01-16 11:25:47,727 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/0/PanDA_Pilot-6970394144/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 11:26:33] 2026-01-16 11:25:47,731 | INFO     | extracted standard info from prmon json
[2026-01-16 11:26:33] 2026-01-16 11:25:47,731 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 11:26:33] 2026-01-16 11:25:47,731 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 11:26:33] 2026-01-16 11:25:47,731 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 11:26:33] 2026-01-16 11:25:47,731 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 11:26:33] 2026-01-16 11:25:47,736 | INFO     | fitting pss+swap vs Time
[2026-01-16 11:26:33] 2026-01-16 11:25:47,736 | INFO     | sum of square deviations: 204155052.8965514
[2026-01-16 11:26:33] 2026-01-16 11:25:47,737 | INFO     | sum of deviations: 7228212245.827587
[2026-01-16 11:26:33] 2026-01-16 11:25:47,737 | INFO     | mean x: 1768559953.0344827
[2026-01-16 11:26:33] 2026-01-16 11:25:47,737 | INFO     | mean y: 2675755.3908045976
[2026-01-16 11:26:33] 2026-01-16 11:25:47,737 | INFO     | intersect: -62614078170.76221
[2026-01-16 11:26:33] 2026-01-16 11:25:47,737 | INFO     | chi2: 0.17992674361190986
[2026-01-16 11:26:33] 2026-01-16 11:25:47,738 | INFO     | current memory leak: 35.41 B/s (using 87 data points, chi2=0.18)
[2026-01-16 11:26:33] 2026-01-16 11:25:47,741 | INFO     | could have reported an average CPU frequency of 2402 MHz (7 samples)
[2026-01-16 11:26:33] 2026-01-16 11:25:47,741 | INFO     | ..............................
[2026-01-16 11:26:33] 2026-01-16 11:25:47,741 | INFO     | . Timing measurements:
[2026-01-16 11:26:33] 2026-01-16 11:25:47,741 | INFO     | . get job = 0 s
[2026-01-16 11:26:33] 2026-01-16 11:25:47,741 | INFO     | . initial setup = 2 s
[2026-01-16 11:26:33] 2026-01-16 11:25:47,742 | INFO     | . payload setup = 17 s
[2026-01-16 11:26:33] 2026-01-16 11:25:47,742 | INFO     | . stage-in = 0 s
[2026-01-16 11:26:33] 2026-01-16 11:25:47,742 | INFO     | . payload execution = 5713 s
[2026-01-16 11:26:33] 2026-01-16 11:25:47,742 | INFO     | . stage-out = 1 s
[2026-01-16 11:26:33] 2026-01-16 11:25:47,743 | INFO     | . log creation = 0 s
[2026-01-16 11:26:33] 2026-01-16 11:25:47,743 | INFO     | ..............................
[2026-01-16 11:26:33] 2026-01-16 11:25:47,974 | INFO     | 
[2026-01-16 11:26:33] 2026-01-16 11:25:47,974 | INFO     | job summary report
[2026-01-16 11:26:33] 2026-01-16 11:25:47,974 | INFO     | --------------------------------------------------
[2026-01-16 11:26:33] 2026-01-16 11:25:47,974 | INFO     | PanDA job id: 6970394144
[2026-01-16 11:26:33] 2026-01-16 11:25:47,974 | INFO     | task id: 48215263
[2026-01-16 11:26:33] 2026-01-16 11:25:47,974 | INFO     | errors: (none)
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | pilot state: finished 
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | transexitcode: 0
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | exeerrorcode: 0
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | exeerrordiag: 
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | exitcode: 0
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | exitmsg: OK
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | cpuconsumptiontime: 30797 s
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | nevents: 400
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | neventsw: 0
[2026-01-16 11:26:33] 2026-01-16 11:25:47,975 | INFO     | pid: 3716029
[2026-01-16 11:26:33] 2026-01-16 11:25:47,976 | INFO     | pgrp: 3716029
[2026-01-16 11:26:33] 2026-01-16 11:25:47,976 | INFO     | corecount: 12
[2026-01-16 11:26:33] 2026-01-16 11:25:47,976 | INFO     | event service: False
[2026-01-16 11:26:33] 2026-01-16 11:25:47,976 | INFO     | sizes: {0: 2283117, 1: 2283825, 2: 2284024, 13: 2284024, 16: 2284342, 23: 2284370, 5734: 2311222, 5737: 2320266, 5740: 2320322, 5754: 2320516}
[2026-01-16 11:26:33] 2026-01-16 11:25:47,976 | INFO     | --------------------------------------------------
[2026-01-16 11:26:33] 2026-01-16 11:25:47,976 | INFO     | 
[2026-01-16 11:26:33] 2026-01-16 11:25:47,976 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31423/slots/0
[2026-01-16 11:26:33] 2026-01-16 11:25:48,039 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,039 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,039 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,039 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,039 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,039 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,040 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,041 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 11:26:33] 2026-01-16 11:25:48,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,041 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 11:26:33] 2026-01-16 11:25:48,043 | INFO     | job 6970394144 has completed (purged errors)
[2026-01-16 11:26:33] 2026-01-16 11:25:48,043 | INFO     | overall cleanup function is called
[2026-01-16 11:26:33] 2026-01-16 11:25:49,059 | INFO     | --- collectZombieJob: --- 10, [3716029]
[2026-01-16 11:26:33] 2026-01-16 11:25:49,059 | INFO     | zombie collector waiting for pid 3716029
[2026-01-16 11:26:33] 2026-01-16 11:25:49,059 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 11:26:33] 2026-01-16 11:25:49,060 | INFO     | collected zombie processes
[2026-01-16 11:26:33] 2026-01-16 11:25:49,060 | INFO     | will attempt to kill all subprocesses of pid=3716029
[2026-01-16 11:26:33] 2026-01-16 11:25:50,407 | INFO     | process IDs to be killed: [3716029] (in reverse order)
[2026-01-16 11:26:33] 2026-01-16 11:25:50,987 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 11:26:33] 2026-01-16 11:25:50,987 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 11:26:33] 2026-01-16 11:25:51,021 | INFO     | did not find any defunct processes belonging to 3716029
[2026-01-16 11:26:33] 2026-01-16 11:25:51,058 | INFO     | did not find any defunct processes belonging to 3716029
[2026-01-16 11:26:33] 2026-01-16 11:25:51,059 | INFO     | ready for new job
[2026-01-16 11:26:33] 2026-01-16 11:25:51,059 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 11:26:33] 2026-01-16 11:25:51,065 | INFO     | ***************************************
[2026-01-16 11:26:33] 2026-01-16 11:25:51,065 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 11:26:33] 2026-01-16 11:25:51,065 | INFO     | ***************************************
[2026-01-16 11:26:33] 2026-01-16 11:25:51,065 | INFO     | 
[2026-01-16 11:26:33] 2026-01-16 11:25:51,077 | INFO     | architecture information:
[2026-01-16 11:26:33] 2026-01-16 11:25:51,078 | INFO     | executing command: cat /etc/os-release
[2026-01-16 11:26:33] 2026-01-16 11:25:51,125 | INFO     | cat /etc/os-release:
[2026-01-16 11:26:33] NAME="CentOS Linux"
[2026-01-16 11:26:33] VERSION="7 (Core)"
[2026-01-16 11:26:33] ID="centos"
[2026-01-16 11:26:33] ID_LIKE="rhel fedora"
[2026-01-16 11:26:33] VERSION_ID="7"
[2026-01-16 11:26:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 11:26:33] ANSI_COLOR="0;31"
[2026-01-16 11:26:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 11:26:33] HOME_URL="https://www.centos.org/"
[2026-01-16 11:26:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 11:26:33] 
[2026-01-16 11:26:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 11:26:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 11:26:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 11:26:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 11:26:33] 
[2026-01-16 11:26:33] 2026-01-16 11:25:51,125 | INFO     | ***************************************
[2026-01-16 11:26:33] 2026-01-16 11:25:51,628 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31423/slots/0
[2026-01-16 11:26:33] 2026-01-16 11:25:51,677 | INFO     | sufficient remaining disk space (275772342272 B)
[2026-01-16 11:26:33] 2026-01-16 11:25:51,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 11:26:33] 2026-01-16 11:25:51,677 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 11:26:33] 2026-01-16 11:25:51,677 | INFO     | update_server=False
[2026-01-16 11:26:33] 2026-01-16 11:25:51,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 11:26:33] 2026-01-16 11:25:51,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 11:26:33] 2026-01-16 11:25:51,773 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-16 11:26:33] 2026-01-16 11:25:51,773 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-16 11:26:33] 2026-01-16 11:25:51,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 11:26:33] 2026-01-16 11:25:51,774 | INFO     | will abort loop
[2026-01-16 11:26:33] 2026-01-16 11:25:52,310 | INFO     | all payload control threads have been joined
[2026-01-16 11:26:33] 2026-01-16 11:25:52,379 | INFO     | all data control threads have been joined
[2026-01-16 11:26:33] 2026-01-16 11:25:52,684 | INFO     | [job] retrieve thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:52,778 | INFO     | [job] job monitor thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:52,791 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:52,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 11:26:33] 2026-01-16 11:25:52,946 | INFO     | all job control threads have been joined
[2026-01-16 11:26:33] 2026-01-16 11:25:52,970 | INFO     | [payload] failed_post thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:52,995 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 11:26:33] 2026-01-16 11:25:53,103 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:53,133 | INFO     | [payload] validate_post thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:53,315 | INFO     | [payload] control thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:53,385 | INFO     | [data] control thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:53,553 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:53,571 | INFO     | [data] copytool_in thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:53,599 | INFO     | [job] validate thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:53,686 | INFO     | [data] copytool_out thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:53,698 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:53,951 | INFO     | [job] control thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:54,000 | INFO     | [job] queue monitor thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:25:56,902 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 11:26:33] 2026-01-16 11:26:20,636 | INFO     | PID=3706691 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 11:26:33] 2026-01-16 11:26:20,636 | INFO     | .. there are 22 such processes running
[2026-01-16 11:26:33] 2026-01-16 11:26:20,637 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 11:26:33] 2026-01-16 11:26:20,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 11:26:33] 2026-01-16 11:26:20,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 11:26:33] 2026-01-16 11:26:25,411 | INFO     | [monitor] cgroup control has ended
[2026-01-16 11:26:33] 2026-01-16 11:26:26,934 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137854861014848)>', '<ExcThread(monitor, started 137854315374336)>']
[2026-01-16 11:26:33] 2026-01-16 11:26:27,679 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 11:26:33] 2026-01-16 11:26:27,679 | INFO     | [monitor] control thread has ended
[2026-01-16 11:26:33] 2026-01-16 11:26:31,959 | INFO     | all workflow threads have been joined
[2026-01-16 11:26:33] 2026-01-16 11:26:31,959 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 11:26:33] 2026-01-16 11:26:31,960 | INFO     | traces error code: 0
[2026-01-16 11:26:33] 2026-01-16 11:26:31,960 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 11:26:33] 2026-01-16 11:26:32,421 [wrapper] ==== pilot stdout END ====
[2026-01-16 11:26:33] 2026-01-16 11:26:32,430 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 11:26:33] 2026-01-16 11:26:32,440 [wrapper] pilotpid: 3706691
[2026-01-16 11:26:33] 2026-01-16 11:26:32,448 [wrapper] Pilot exit status: 0
[2026-01-16 11:26:33] 2026-01-16 11:26:32,481 [wrapper] pandaids: 6970394144
[2026-01-16 11:26:33] 2026-01-16 11:26:32,798 [wrapper] cleanup supervisor_pilot 4181960 3706692
[2026-01-16 11:26:33] 2026-01-16 11:26:32,805 [wrapper] Test setup, not cleaning
[2026-01-16 11:26:33] 2026-01-16 11:26:32,816 [wrapper] apfmon messages muted
[2026-01-16 11:26:33] 2026-01-16 11:26:32,827 [wrapper] ==== wrapper stdout END ====
[2026-01-16 11:26:33] 2026-01-16 11:26:32,836 [wrapper] ==== wrapper stderr END ====
[2026-01-16 11:26:33]  *** Error codes and diagnostics ***
[2026-01-16 11:26:33]     "exeErrorCode": 0,
[2026-01-16 11:26:33]     "exeErrorDiag": "",
[2026-01-16 11:26:33]     "pilotErrorCode": 0,
[2026-01-16 11:26:33]     "pilotErrorDiag": "",
[2026-01-16 11:26:33]  *** Listing of results directory ***
[2026-01-16 11:26:33] total 742676
[2026-01-16 11:26:33] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:50 pilot3.tar.gz
[2026-01-16 11:26:33] -rwx------ 1 boinc boinc     36322 Jan 15 04:52 runpilot2-wrapper.sh
[2026-01-16 11:26:33] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:54 queuedata.json
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc       100 Jan 16 09:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 11:26:33] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 09:48 run_atlas
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc       105 Jan 16 09:48 job.xml
[2026-01-16 11:26:33] -rw-r--r-- 2 boinc boinc 598004735 Jan 16 09:48 EVNT.32794306._001823.pool.root.1
[2026-01-16 11:26:33] drwxrwx--x 2 boinc boinc      4096 Jan 16 09:48 shared
[2026-01-16 11:26:33] -rw-r--r-- 2 boinc boinc    592399 Jan 16 09:48 input.tar.gz
[2026-01-16 11:26:33] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:48 start_atlas.sh
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 09:48 init_data.xml
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc         0 Jan 16 09:48 boinc_setup_complete
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc         0 Jan 16 09:48 boinc_lockfile
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc      2505 Jan 16 09:48 pandaJob.out
[2026-01-16 11:26:33] -rw------- 1 boinc boinc   1004067 Jan 16 09:49 agis_schedconf.cvmfs.json
[2026-01-16 11:26:33] -rw------- 1 boinc boinc   1516246 Jan 16 09:49 agis_ddmendpoints.agis.ALL.json
[2026-01-16 11:26:33] drwx------ 5 boinc boinc      4096 Jan 16 09:49 pilot3
[2026-01-16 11:26:33] -rw------- 1 boinc boinc 156184444 Jan 16 11:24 HITS.48215263._046985.pool.root.1
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc       531 Jan 16 11:24 boinc_task_state.xml
[2026-01-16 11:26:33] -rw------- 1 boinc boinc      1021 Jan 16 11:25 memory_monitor_summary.json
[2026-01-16 11:26:33] -rw------- 1 boinc boinc    386215 Jan 16 11:25 log.48215263._046985.job.log.tgz.1
[2026-01-16 11:26:33] -rw------- 1 boinc boinc      7727 Jan 16 11:25 heartbeat.json
[2026-01-16 11:26:33] -rw------- 1 boinc boinc        95 Jan 16 11:26 pilot_heartbeat.json
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 11:26 boinc_mmap_file
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc        27 Jan 16 11:26 wrapper_checkpoint.txt
[2026-01-16 11:26:33] -rw------- 1 boinc boinc      5034 Jan 16 11:26 pilotlog.txt
[2026-01-16 11:26:33] -rw------- 1 boinc boinc    805998 Jan 16 11:26 log.48215263._046985.job.log.1
[2026-01-16 11:26:33] -rw------- 1 boinc boinc       357 Jan 16 11:26 output.list
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc       620 Jan 16 11:26 runtime_log
[2026-01-16 11:26:33] -rw------- 1 boinc boinc   1208320 Jan 16 11:26 result.tar.gz
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 11:26 runtime_log.err
[2026-01-16 11:26:33] -rw------- 1 boinc boinc       651 Jan 16 11:26 LWaKDmMWU08n9Rq4apOajLDm4fhM0noT9bVo0NGKDm01nKDmC3G8Jm.diag
[2026-01-16 11:26:33] -rw-rw-r-- 1 boinc boinc     22126 Jan 16 11:26 stderr.txt
[2026-01-16 11:26:33] HITS file was successfully produced:
[2026-01-16 11:26:33] -rw------- 1 boinc boinc 156184444 Jan 16 11:24 shared/HITS.pool.root.1
[2026-01-16 11:26:33]  *** Contents of shared directory: ***
[2026-01-16 11:26:33] total 738300
[2026-01-16 11:26:33] -rw-r--r-- 2 boinc boinc 598004735 Jan 16 09:48 ATLAS.root_0
[2026-01-16 11:26:33] -rw-r--r-- 2 boinc boinc    592399 Jan 16 09:48 input.tar.gz
[2026-01-16 11:26:33] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:48 start_atlas.sh
[2026-01-16 11:26:33] -rw------- 1 boinc boinc 156184444 Jan 16 11:24 HITS.pool.root.1
[2026-01-16 11:26:33] -rw------- 1 boinc boinc   1208320 Jan 16 11:26 result.tar.gz
11:26:35 (3701775): run_atlas exited; CPU time 31118.722264
11:26:35 (3701775): called boinc_finish(0)

</stderr_txt>
]]>

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