Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:16:29 (955129): wrapper (7.7.26015): starting
14:16:29 (955129): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 14:16:29] Arguments: --nthreads 12
[2026-01-16 14:16:29] Threads: 12
[2026-01-16 14:16:29] Checking for CVMFS
[2026-01-16 14:16:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 14:16:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 14:16:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 14:16:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 14:16:31] 2.13.3.0 40677 10584 70696 155210 3 64 4043109 4096001 19360 130560 0 86467092 99.982 1157520 229 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 14:16:31] CVMFS is ok
[2026-01-16 14:16:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 14:16:31] Checking for apptainer binary...
[2026-01-16 14:16:31] apptainer is not installed, using version from CVMFS
[2026-01-16 14:16:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 14:16:33] epyc7v12
[2026-01-16 14:16:33] apptainer works
[2026-01-16 14:16:33] Set ATHENA_PROC_NUMBER=12
[2026-01-16 14:16:33] Set ATHENA_CORE_NUMBER=12
[2026-01-16 14:16:33] Starting ATLAS job with PandaID=6970287846
[2026-01-16 14:16:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31426/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 15:46:21]  *** The last 200 lines of the pilot log: ***
[2026-01-16 15:46:21] 2026-01-16 15:45:16,685 | INFO     | time since job start (5289s) is within the limit (349056.0s)
[2026-01-16 15:46:21] 2026-01-16 15:45:17,662 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 15:46:21] 2026-01-16 15:45:17,993 | INFO     | monitor loop #348: job 0:6970287846 is in state 'finished'
[2026-01-16 15:46:21] 2026-01-16 15:45:17,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 15:46:21] 2026-01-16 15:45:18,697 | INFO     | time since job start (5291s) is within the limit (349056.0s)
[2026-01-16 15:46:21] 2026-01-16 15:45:18,947 | INFO     | job 6970287846 has state=finished
[2026-01-16 15:46:21] 2026-01-16 15:45:18,948 | INFO     | preparing for final server update for job 6970287846 in state='finished'
[2026-01-16 15:46:21] 2026-01-16 15:45:18,948 | INFO     | this job has now completed (state=finished)
[2026-01-16 15:46:21] 2026-01-16 15:45:18,948 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 15:46:21] 2026-01-16 15:45:18,948 | INFO     | log transfer has been attempted: DONE
[2026-01-16 15:46:21] 2026-01-16 15:45:18,949 | INFO     | job 6970287846 has finished - writing final server update
[2026-01-16 15:46:21] 2026-01-16 15:45:18,949 | INFO     | total number of processed events: 400 (read)
[2026-01-16 15:46:21] 2026-01-16 15:45:18,952 | INFO     | executing command: lscpu
[2026-01-16 15:46:21] 2026-01-16 15:45:19,117 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 15:46:21] 2026-01-16 15:45:20,496 | INFO     | monitor loop #349: job 0:6970287846 is in state 'finished'
[2026-01-16 15:46:21] 2026-01-16 15:45:20,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 15:46:21] 2026-01-16 15:45:20,702 | INFO     | time since job start (5293s) is within the limit (349056.0s)
[2026-01-16 15:46:21] 2026-01-16 15:45:22,707 | INFO     | time since job start (5295s) is within the limit (349056.0s)
[2026-01-16 15:46:21] 2026-01-16 15:45:23,003 | INFO     | monitor loop #350: job 0:6970287846 is in state 'finished'
[2026-01-16 15:46:21] 2026-01-16 15:45:23,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 15:46:21] 2026-01-16 15:45:24,712 | INFO     | time since job start (5297s) is within the limit (349056.0s)
[2026-01-16 15:46:21] 2026-01-16 15:45:25,506 | INFO     | monitor loop #351: job 0:6970287846 is in state 'finished'
[2026-01-16 15:46:21] 2026-01-16 15:45:25,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 15:46:21] 2026-01-16 15:45:26,725 | INFO     | time since job start (5299s) is within the limit (349056.0s)
[2026-01-16 15:46:21] 2026-01-16 15:45:28,010 | INFO     | monitor loop #352: job 0:6970287846 is in state 'finished'
[2026-01-16 15:46:21] 2026-01-16 15:45:28,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 15:46:21] 2026-01-16 15:45:28,732 | INFO     | time since job start (5301s) is within the limit (349056.0s)
[2026-01-16 15:46:21] 2026-01-16 15:45:30,514 | INFO     | monitor loop #353: job 0:6970287846 is in state 'finished'
[2026-01-16 15:46:21] 2026-01-16 15:45:30,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 15:46:21] 2026-01-16 15:45:30,737 | INFO     | time since job start (5303s) is within the limit (349056.0s)
[2026-01-16 15:46:21] 2026-01-16 15:45:32,742 | INFO     | time since job start (5305s) is within the limit (349056.0s)
[2026-01-16 15:46:21] 2026-01-16 15:45:33,017 | INFO     | monitor loop #354: job 0:6970287846 is in state 'finished'
[2026-01-16 15:46:21] 2026-01-16 15:45:33,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 15:46:21] 2026-01-16 15:45:33,202 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 15:46:21] 2026-01-16 15:45:33,247 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2397.1786874999993
[2026-01-16 15:46:21] 2026-01-16 15:45:33,308 | INFO     | using path: /opt/boinc/instance_homes/boinc_31426/slots/1/PanDA_Pilot-6970287846/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 15:46:21] 2026-01-16 15:45:33,309 | INFO     | extracted standard info from prmon json
[2026-01-16 15:46:21] 2026-01-16 15:45:33,309 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 15:46:21] 2026-01-16 15:45:33,309 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 15:46:21] 2026-01-16 15:45:33,309 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 15:46:21] 2026-01-16 15:45:33,310 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 15:46:21] 2026-01-16 15:45:33,316 | INFO     | fitting pss+swap vs Time
[2026-01-16 15:46:21] 2026-01-16 15:45:33,316 | INFO     | sum of square deviations: 152858680.0
[2026-01-16 15:46:21] 2026-01-16 15:45:33,317 | INFO     | sum of deviations: 2905816434.9999995
[2026-01-16 15:46:21] 2026-01-16 15:45:33,317 | INFO     | mean x: 1768575781.0
[2026-01-16 15:46:21] 2026-01-16 15:45:33,317 | INFO     | mean y: 2695042.4556962023
[2026-01-16 15:46:21] 2026-01-16 15:45:33,317 | INFO     | intersect: -33617617333.477158
[2026-01-16 15:46:21] 2026-01-16 15:45:33,317 | INFO     | chi2: 0.18194479776547
[2026-01-16 15:46:21] 2026-01-16 15:45:33,318 | INFO     | current memory leak: 19.01 B/s (using 79 data points, chi2=0.18)
[2026-01-16 15:46:21] 2026-01-16 15:45:33,318 | INFO     | could have reported an average CPU frequency of 2400 MHz (6 samples)
[2026-01-16 15:46:21] 2026-01-16 15:45:33,318 | INFO     | ..............................
[2026-01-16 15:46:21] 2026-01-16 15:45:33,318 | INFO     | . Timing measurements:
[2026-01-16 15:46:21] 2026-01-16 15:45:33,318 | INFO     | . get job = 0 s
[2026-01-16 15:46:21] 2026-01-16 15:45:33,319 | INFO     | . initial setup = 4 s
[2026-01-16 15:46:21] 2026-01-16 15:45:33,319 | INFO     | . payload setup = 17 s
[2026-01-16 15:46:21] 2026-01-16 15:45:33,319 | INFO     | . stage-in = 0 s
[2026-01-16 15:46:21] 2026-01-16 15:45:33,319 | INFO     | . payload execution = 5228 s
[2026-01-16 15:46:21] 2026-01-16 15:45:33,319 | INFO     | . stage-out = 1 s
[2026-01-16 15:46:21] 2026-01-16 15:45:33,319 | INFO     | . log creation = 0 s
[2026-01-16 15:46:21] 2026-01-16 15:45:33,319 | INFO     | ..............................
[2026-01-16 15:46:21] 2026-01-16 15:45:34,020 | INFO     | 
[2026-01-16 15:46:21] 2026-01-16 15:45:34,020 | INFO     | job summary report
[2026-01-16 15:46:21] 2026-01-16 15:45:34,020 | INFO     | --------------------------------------------------
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | PanDA job id: 6970287846
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | task id: 48215263
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | errors: (none)
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | pilot state: finished 
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | transexitcode: 0
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | exeerrorcode: 0
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | exeerrordiag: 
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | exitcode: 0
[2026-01-16 15:46:21] 2026-01-16 15:45:34,021 | INFO     | exitmsg: OK
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | cpuconsumptiontime: 29044 s
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | nevents: 400
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | neventsw: 0
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | pid: 972663
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | pgrp: 972663
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | corecount: 12
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | event service: False
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | sizes: {0: 2283747, 1: 2283831, 2: 2284002, 13: 2284030, 15: 2284348, 23: 2284376, 5250: 2311038, 5252: 2320082, 5253: 2320138, 5269: 2320332}
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | --------------------------------------------------
[2026-01-16 15:46:21] 2026-01-16 15:45:34,022 | INFO     | 
[2026-01-16 15:46:21] 2026-01-16 15:45:34,023 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31426/slots/1
[2026-01-16 15:46:21] 2026-01-16 15:45:34,096 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,097 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,097 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,097 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,097 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,097 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,097 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,097 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,097 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 15:46:21] 2026-01-16 15:45:34,098 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,099 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 15:46:21] 2026-01-16 15:45:34,099 | INFO     | job 6970287846 has completed (purged errors)
[2026-01-16 15:46:21] 2026-01-16 15:45:34,099 | INFO     | overall cleanup function is called
[2026-01-16 15:46:21] 2026-01-16 15:45:35,128 | INFO     | --- collectZombieJob: --- 10, [972663]
[2026-01-16 15:46:21] 2026-01-16 15:45:35,128 | INFO     | zombie collector waiting for pid 972663
[2026-01-16 15:46:21] 2026-01-16 15:45:35,128 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 15:46:21] 2026-01-16 15:45:35,129 | INFO     | collected zombie processes
[2026-01-16 15:46:21] 2026-01-16 15:45:35,129 | INFO     | will attempt to kill all subprocesses of pid=972663
[2026-01-16 15:46:21] 2026-01-16 15:45:35,603 | INFO     | PID=959330 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 15:46:21] 2026-01-16 15:45:35,607 | INFO     | .. there are 22 such processes running
[2026-01-16 15:46:21] 2026-01-16 15:45:36,541 | INFO     | process IDs to be killed: [972663] (in reverse order)
[2026-01-16 15:46:21] 2026-01-16 15:45:37,133 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 15:46:21] 2026-01-16 15:45:37,134 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 15:46:21] 2026-01-16 15:45:37,193 | INFO     | did not find any defunct processes belonging to 972663
[2026-01-16 15:46:21] 2026-01-16 15:45:37,226 | INFO     | did not find any defunct processes belonging to 972663
[2026-01-16 15:46:21] 2026-01-16 15:45:37,226 | INFO     | ready for new job
[2026-01-16 15:46:21] 2026-01-16 15:45:37,226 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 15:46:21] 2026-01-16 15:45:37,228 | INFO     | ***************************************
[2026-01-16 15:46:21] 2026-01-16 15:45:37,228 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 15:46:21] 2026-01-16 15:45:37,228 | INFO     | ***************************************
[2026-01-16 15:46:21] 2026-01-16 15:45:37,228 | INFO     | 
[2026-01-16 15:46:21] 2026-01-16 15:45:37,238 | INFO     | architecture information:
[2026-01-16 15:46:21] 2026-01-16 15:45:37,242 | INFO     | executing command: cat /etc/os-release
[2026-01-16 15:46:21] 2026-01-16 15:45:37,301 | INFO     | cat /etc/os-release:
[2026-01-16 15:46:21] NAME="CentOS Linux"
[2026-01-16 15:46:21] VERSION="7 (Core)"
[2026-01-16 15:46:21] ID="centos"
[2026-01-16 15:46:21] ID_LIKE="rhel fedora"
[2026-01-16 15:46:21] VERSION_ID="7"
[2026-01-16 15:46:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 15:46:21] ANSI_COLOR="0;31"
[2026-01-16 15:46:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 15:46:21] HOME_URL="https://www.centos.org/"
[2026-01-16 15:46:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 15:46:21] 
[2026-01-16 15:46:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 15:46:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 15:46:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 15:46:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 15:46:21] 
[2026-01-16 15:46:21] 2026-01-16 15:45:37,301 | INFO     | ***************************************
[2026-01-16 15:46:21] 2026-01-16 15:45:37,805 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31426/slots/1
[2026-01-16 15:46:21] 2026-01-16 15:45:37,854 | INFO     | sufficient remaining disk space (304438312960 B)
[2026-01-16 15:46:21] 2026-01-16 15:45:37,854 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 15:46:21] 2026-01-16 15:45:37,854 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 15:46:21] 2026-01-16 15:45:37,854 | INFO     | update_server=False
[2026-01-16 15:46:21] 2026-01-16 15:45:37,854 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 15:46:21] 2026-01-16 15:45:37,857 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 15:46:21] 2026-01-16 15:45:37,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 15:46:21] 2026-01-16 15:45:38,038 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-16 15:46:21] 2026-01-16 15:45:38,038 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-16 15:46:21] 2026-01-16 15:45:38,039 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 15:46:21] 2026-01-16 15:45:38,039 | INFO     | will abort loop
[2026-01-16 15:46:21] 2026-01-16 15:45:38,325 | INFO     | all payload control threads have been joined
[2026-01-16 15:46:21] 2026-01-16 15:45:38,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 15:46:21] 2026-01-16 15:45:38,827 | INFO     | all data control threads have been joined
[2026-01-16 15:46:21] 2026-01-16 15:45:38,862 | INFO     | [job] retrieve thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,043 | INFO     | [job] job monitor thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,054 | INFO     | all job control threads have been joined
[2026-01-16 15:46:21] 2026-01-16 15:45:39,330 | INFO     | [payload] control thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,357 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,519 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,522 | INFO     | [data] copytool_in thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,567 | INFO     | [job] validate thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,572 | INFO     | [job] queue monitor thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,803 | INFO     | [payload] validate_post thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,832 | INFO     | [data] control thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,862 | INFO     | [data] copytool_out thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:39,948 | INFO     | [payload] failed_post thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:40,050 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:40,061 | INFO     | [job] control thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:41,863 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:45:48,569 | INFO     | job.realtimelogging is not enabled
[2026-01-16 15:46:21] 2026-01-16 15:45:49,574 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 15:46:21] 2026-01-16 15:46:08,988 | INFO     | PID=959330 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 15:46:21] 2026-01-16 15:46:08,989 | INFO     | .. there are 22 such processes running
[2026-01-16 15:46:21] 2026-01-16 15:46:08,991 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 15:46:21] 2026-01-16 15:46:08,991 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 15:46:21] 2026-01-16 15:46:08,991 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 15:46:21] 2026-01-16 15:46:15,481 | INFO     | [monitor] cgroup control has ended
[2026-01-16 15:46:21] 2026-01-16 15:46:16,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124329320638272)>', '<ExcThread(monitor, started 124328918095616)>']
[2026-01-16 15:46:21] 2026-01-16 15:46:16,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 15:46:21] 2026-01-16 15:46:16,030 | INFO     | [monitor] control thread has ended
[2026-01-16 15:46:21] 2026-01-16 15:46:21,026 | INFO     | all workflow threads have been joined
[2026-01-16 15:46:21] 2026-01-16 15:46:21,026 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 15:46:21] 2026-01-16 15:46:21,027 | INFO     | traces error code: 0
[2026-01-16 15:46:21] 2026-01-16 15:46:21,027 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 15:46:21] 2026-01-16 15:46:21,296 [wrapper] ==== pilot stdout END ====
[2026-01-16 15:46:21] 2026-01-16 15:46:21,303 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 15:46:21] 2026-01-16 15:46:21,311 [wrapper] pilotpid: 959330
[2026-01-16 15:46:21] 2026-01-16 15:46:21,318 [wrapper] Pilot exit status: 0
[2026-01-16 15:46:21] 2026-01-16 15:46:21,359 [wrapper] pandaids: 6970287846
[2026-01-16 15:46:21] 2026-01-16 15:46:21,602 [wrapper] cleanup supervisor_pilot 1452947 959331
[2026-01-16 15:46:21] 2026-01-16 15:46:21,616 [wrapper] Test setup, not cleaning
[2026-01-16 15:46:21] 2026-01-16 15:46:21,625 [wrapper] apfmon messages muted
[2026-01-16 15:46:21] 2026-01-16 15:46:21,634 [wrapper] ==== wrapper stdout END ====
[2026-01-16 15:46:21] 2026-01-16 15:46:21,644 [wrapper] ==== wrapper stderr END ====
[2026-01-16 15:46:21]  *** Error codes and diagnostics ***
[2026-01-16 15:46:21]     "exeErrorCode": 0,
[2026-01-16 15:46:21]     "exeErrorDiag": "",
[2026-01-16 15:46:21]     "pilotErrorCode": 0,
[2026-01-16 15:46:21]     "pilotErrorDiag": "",
[2026-01-16 15:46:21]  *** Listing of results directory ***
[2026-01-16 15:46:21] total 736792
[2026-01-16 15:46:21] -rw-r--r-- 1 boinc boinc    579449 Jan 15 03:00 pilot3.tar.gz
[2026-01-16 15:46:21] -rwx------ 1 boinc boinc     36322 Jan 15 03:04 runpilot2-wrapper.sh
[2026-01-16 15:46:21] -rw-r--r-- 1 boinc boinc      5112 Jan 15 03:10 queuedata.json
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc       100 Jan 16 14:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 15:46:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 14:16 run_atlas
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc       105 Jan 16 14:16 job.xml
[2026-01-16 15:46:21] -rw-r--r-- 2 boinc boinc 598094580 Jan 16 14:16 EVNT.32794306._001732.pool.root.1
[2026-01-16 15:46:21] -rw-r--r-- 2 boinc boinc     15847 Jan 16 14:16 start_atlas.sh
[2026-01-16 15:46:21] drwxrwx--x 2 boinc boinc      4096 Jan 16 14:16 shared
[2026-01-16 15:46:21] -rw-r--r-- 2 boinc boinc    592399 Jan 16 14:16 input.tar.gz
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 14:16 init_data.xml
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc         0 Jan 16 14:16 boinc_setup_complete
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc         0 Jan 16 14:16 boinc_lockfile
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc      2508 Jan 16 14:16 pandaJob.out
[2026-01-16 15:46:21] -rw------- 1 boinc boinc   1004099 Jan 16 14:17 agis_schedconf.cvmfs.json
[2026-01-16 15:46:21] -rw------- 1 boinc boinc   1516246 Jan 16 14:17 agis_ddmendpoints.agis.ALL.json
[2026-01-16 15:46:21] drwx------ 5 boinc boinc      4096 Jan 16 14:17 pilot3
[2026-01-16 15:46:21] -rw------- 1 boinc boinc 150164570 Jan 16 15:44 HITS.48215263._044503.pool.root.1
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc       531 Jan 16 15:44 boinc_task_state.xml
[2026-01-16 15:46:21] -rw------- 1 boinc boinc      1022 Jan 16 15:45 memory_monitor_summary.json
[2026-01-16 15:46:21] -rw------- 1 boinc boinc    400044 Jan 16 15:45 log.48215263._044503.job.log.tgz.1
[2026-01-16 15:46:21] -rw------- 1 boinc boinc      7736 Jan 16 15:45 heartbeat.json
[2026-01-16 15:46:21] -rw------- 1 boinc boinc        95 Jan 16 15:46 pilot_heartbeat.json
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 15:46 boinc_mmap_file
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc        27 Jan 16 15:46 wrapper_checkpoint.txt
[2026-01-16 15:46:21] -rw------- 1 boinc boinc      5105 Jan 16 15:46 pilotlog.txt
[2026-01-16 15:46:21] -rw------- 1 boinc boinc    741535 Jan 16 15:46 log.48215263._044503.job.log.1
[2026-01-16 15:46:21] -rw------- 1 boinc boinc       357 Jan 16 15:46 output.list
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc       620 Jan 16 15:46 runtime_log
[2026-01-16 15:46:21] -rw------- 1 boinc boinc   1157120 Jan 16 15:46 result.tar.gz
[2026-01-16 15:46:21] -rw------- 1 boinc boinc       652 Jan 16 15:46 wuQLDmKqS08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSqnKDmGih6An.diag
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 15:46 runtime_log.err
[2026-01-16 15:46:21] -rw-rw-r-- 1 boinc boinc     22105 Jan 16 15:46 stderr.txt
[2026-01-16 15:46:21] HITS file was successfully produced:
[2026-01-16 15:46:21] -rw------- 1 boinc boinc 150164570 Jan 16 15:44 shared/HITS.pool.root.1
[2026-01-16 15:46:21]  *** Contents of shared directory: ***
[2026-01-16 15:46:21] total 732464
[2026-01-16 15:46:21] -rw-r--r-- 2 boinc boinc 598094580 Jan 16 14:16 ATLAS.root_0
[2026-01-16 15:46:21] -rw-r--r-- 2 boinc boinc     15847 Jan 16 14:16 start_atlas.sh
[2026-01-16 15:46:21] -rw-r--r-- 2 boinc boinc    592399 Jan 16 14:16 input.tar.gz
[2026-01-16 15:46:21] -rw------- 1 boinc boinc 150164570 Jan 16 15:44 HITS.pool.root.1
[2026-01-16 15:46:21] -rw------- 1 boinc boinc   1157120 Jan 16 15:46 result.tar.gz
15:46:23 (955129): run_atlas exited; CPU time 29344.390933
15:46:23 (955129): called boinc_finish(0)

</stderr_txt>
]]>

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