Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:30:28 (24895): wrapper (7.7.26015): starting
01:30:28 (24895): wrapper: running run_atlas (--nthreads 12)
[2026-01-15 01:30:28] Arguments: --nthreads 12
[2026-01-15 01:30:28] Threads: 12
[2026-01-15 01:30:28] Checking for CVMFS
[2026-01-15 01:30:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 01:30:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 01:30:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 01:30:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 01:30:29] 2.11.2.0 2924 359278 102248 155158 0 56 18209828 20275200 1 130560 4 154558453 99.949 22147178 16255 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-15 01:30:29] CVMFS is ok
[2026-01-15 01:30:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 01:30:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 01:30:29] Further information can be found at the LHC@home message board.
[2026-01-15 01:30:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 01:30:29] Checking for apptainer binary...
[2026-01-15 01:30:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 01:30:29] Running /usr/bin/apptainer --version
[2026-01-15 01:30:29] apptainer version 1.3.2-1.el7
[2026-01-15 01:30:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 01:30:30] c-205-28.aglt2.org
[2026-01-15 01:30:30] apptainer works
[2026-01-15 01:30:30] Set ATHENA_PROC_NUMBER=12
[2026-01-15 01:30:30] Set ATHENA_CORE_NUMBER=12
[2026-01-15 01:30:30] Starting ATLAS job with PandaID=6970285826
[2026-01-15 01:30:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 02:20:00]  *** The last 200 lines of the pilot log: ***
[2026-01-15 02:20:00]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6970285826/log.48215263._043751.job.log.tgz.1
[2026-01-15 02:20:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/e1/log.48215263._043751.job.log.tgz.1
[2026-01-15 02:20:00]  workdir=None
[2026-01-15 02:20:00] ]
[2026-01-15 02:20:00] 2026-01-15 07:19:18,511 | INFO     | transferring file log.48215263._043751.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6970285826/log.48215263._043751.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 02:20:00] 2026-01-15 07:19:18,511 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6970285826/log.48215263._043751.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._043751.job
[2026-01-15 02:20:00] 2026-01-15 07:19:18,532 | INFO     | adding to output.list: log.48215263._043751.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/e1/log.48215263._043751.job.log.tg
[2026-01-15 02:20:00] 2026-01-15 07:19:18,533 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 02:20:00] 2026-01-15 07:19:18,533 | INFO     | summary of transferred files:
[2026-01-15 02:20:00] 2026-01-15 07:19:18,534 | INFO     |  -- lfn=log.48215263._043751.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 02:20:00] 2026-01-15 07:19:18,534 | INFO     | stage-out finished correctly
[2026-01-15 02:20:00] 2026-01-15 07:19:19,229 | INFO     | time since job start (2913s) is within the limit (349056.0s)
[2026-01-15 02:20:00] 2026-01-15 07:19:20,363 | INFO     | monitor loop #221: job 0:6970285826 is in state 'finished'
[2026-01-15 02:20:00] 2026-01-15 07:19:20,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 02:20:00] 2026-01-15 07:19:21,235 | INFO     | time since job start (2915s) is within the limit (349056.0s)
[2026-01-15 02:20:00] 2026-01-15 07:19:21,996 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 02:20:00] 2026-01-15 07:19:22,078 | INFO     | job 6970285826 has state=finished
[2026-01-15 02:20:00] 2026-01-15 07:19:22,079 | INFO     | preparing for final server update for job 6970285826 in state='finished'
[2026-01-15 02:20:00] 2026-01-15 07:19:22,136 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-15 02:20:00] 2026-01-15 07:19:22,136 | INFO     | this job has now completed (state=finished)
[2026-01-15 02:20:00] 2026-01-15 07:19:22,136 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 02:20:00] 2026-01-15 07:19:22,136 | INFO     | log transfer has been attempted: DONE
[2026-01-15 02:20:00] 2026-01-15 07:19:22,136 | INFO     | job 6970285826 has finished - writing final server update
[2026-01-15 02:20:00] 2026-01-15 07:19:22,137 | INFO     | total number of processed events: 400 (read)
[2026-01-15 02:20:00] 2026-01-15 07:19:22,137 | INFO     | executing command: lscpu
[2026-01-15 02:20:00] 2026-01-15 07:19:22,163 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 02:20:00] 2026-01-15 07:19:22,866 | INFO     | monitor loop #222: job 0:6970285826 is in state 'finished'
[2026-01-15 02:20:00] 2026-01-15 07:19:22,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 02:20:00] 2026-01-15 07:19:23,241 | INFO     | time since job start (2917s) is within the limit (349056.0s)
[2026-01-15 02:20:00] 2026-01-15 07:19:25,247 | INFO     | time since job start (2919s) is within the limit (349056.0s)
[2026-01-15 02:20:00] 2026-01-15 07:19:25,247 | INFO     | 2921s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-15 02:20:00] 2026-01-15 07:19:25,369 | INFO     | monitor loop #223: job 0:6970285826 is in state 'finished'
[2026-01-15 02:20:00] 2026-01-15 07:19:25,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 02:20:00] 2026-01-15 07:19:26,369 | INFO     | PID=28938 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 02:20:00] 2026-01-15 07:19:27,370 | INFO     | time since job start (2921s) is within the limit (349056.0s)
[2026-01-15 02:20:00] 2026-01-15 07:19:27,872 | INFO     | monitor loop #224: job 0:6970285826 is in state 'finished'
[2026-01-15 02:20:00] 2026-01-15 07:19:27,872 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 02:20:00] 2026-01-15 07:19:28,074 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-15 02:20:00] 2026-01-15 07:19:28,077 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2026-01-15 02:20:00] 2026-01-15 07:19:28,080 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6970285826/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 02:20:00] 2026-01-15 07:19:28,080 | INFO     | extracted standard info from prmon json
[2026-01-15 02:20:00] 2026-01-15 07:19:28,080 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 02:20:00] 2026-01-15 07:19:28,081 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 02:20:00] 2026-01-15 07:19:28,081 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 02:20:00] 2026-01-15 07:19:28,081 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 02:20:00] 2026-01-15 07:19:28,083 | INFO     | fitting pss+swap vs Time
[2026-01-15 02:20:00] 2026-01-15 07:19:28,083 | INFO     | sum of square deviations: 21358540.0
[2026-01-15 02:20:00] 2026-01-15 07:19:28,084 | INFO     | sum of deviations: -2308889284.0
[2026-01-15 02:20:00] 2026-01-15 07:19:28,084 | INFO     | mean x: 1768460200.0
[2026-01-15 02:20:00] 2026-01-15 07:19:28,084 | INFO     | mean y: 2921784.6585365855
[2026-01-15 02:20:00] 2026-01-15 07:19:28,084 | INFO     | intersect: 191176045273.4596
[2026-01-15 02:20:00] 2026-01-15 07:19:28,084 | INFO     | chi2: 0.04583570936137746
[2026-01-15 02:20:00] 2026-01-15 07:19:28,084 | INFO     | current memory leak: -108.10 B/s (using 41 data points, chi2=0.05)
[2026-01-15 02:20:00] 2026-01-15 07:19:28,085 | INFO     | could have reported an average CPU frequency of 1924 MHz (5 samples)
[2026-01-15 02:20:00] 2026-01-15 07:19:28,085 | INFO     | ..............................
[2026-01-15 02:20:00] 2026-01-15 07:19:28,085 | INFO     | . Timing measurements:
[2026-01-15 02:20:00] 2026-01-15 07:19:28,085 | INFO     | . get job = 0 s
[2026-01-15 02:20:00] 2026-01-15 07:19:28,085 | INFO     | . initial setup = 2 s
[2026-01-15 02:20:00] 2026-01-15 07:19:28,085 | INFO     | . payload setup = 7 s
[2026-01-15 02:20:00] 2026-01-15 07:19:28,086 | INFO     | . stage-in = 0 s
[2026-01-15 02:20:00] 2026-01-15 07:19:28,086 | INFO     | . payload execution = 2883 s
[2026-01-15 02:20:00] 2026-01-15 07:19:28,086 | INFO     | . stage-out = 0 s
[2026-01-15 02:20:00] 2026-01-15 07:19:28,086 | INFO     | . log creation = 0 s
[2026-01-15 02:20:00] 2026-01-15 07:19:28,086 | INFO     | ..............................
[2026-01-15 02:20:00] 2026-01-15 07:19:28,166 | INFO     | 
[2026-01-15 02:20:00] 2026-01-15 07:19:28,167 | INFO     | job summary report
[2026-01-15 02:20:00] 2026-01-15 07:19:28,167 | INFO     | --------------------------------------------------
[2026-01-15 02:20:00] 2026-01-15 07:19:28,167 | INFO     | PanDA job id: 6970285826
[2026-01-15 02:20:00] 2026-01-15 07:19:28,167 | INFO     | task id: 48215263
[2026-01-15 02:20:00] 2026-01-15 07:19:28,167 | INFO     | errors: (none)
[2026-01-15 02:20:00] 2026-01-15 07:19:28,168 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 02:20:00] 2026-01-15 07:19:28,168 | INFO     | pilot state: finished 
[2026-01-15 02:20:00] 2026-01-15 07:19:28,168 | INFO     | transexitcode: 0
[2026-01-15 02:20:00] 2026-01-15 07:19:28,168 | INFO     | exeerrorcode: 0
[2026-01-15 02:20:00] 2026-01-15 07:19:28,168 | INFO     | exeerrordiag: 
[2026-01-15 02:20:00] 2026-01-15 07:19:28,168 | INFO     | exitcode: 0
[2026-01-15 02:20:00] 2026-01-15 07:19:28,169 | INFO     | exitmsg: OK
[2026-01-15 02:20:00] 2026-01-15 07:19:28,169 | INFO     | cpuconsumptiontime: 29566 s
[2026-01-15 02:20:00] 2026-01-15 07:19:28,169 | INFO     | nevents: 400
[2026-01-15 02:20:00] 2026-01-15 07:19:28,169 | INFO     | neventsw: 0
[2026-01-15 02:20:00] 2026-01-15 07:19:28,169 | INFO     | pid: 3085
[2026-01-15 02:20:00] 2026-01-15 07:19:28,169 | INFO     | pgrp: 3085
[2026-01-15 02:20:00] 2026-01-15 07:19:28,170 | INFO     | corecount: 12
[2026-01-15 02:20:00] 2026-01-15 07:19:28,170 | INFO     | event service: False
[2026-01-15 02:20:00] 2026-01-15 07:19:28,170 | INFO     | sizes: {0: 2283728, 1: 2283927, 6: 2284189, 11: 2284217, 2894: 2309513, 2896: 2318511, 2899: 2318695, 2905: 2318921}
[2026-01-15 02:20:00] 2026-01-15 07:19:28,170 | INFO     | --------------------------------------------------
[2026-01-15 02:20:00] 2026-01-15 07:19:28,170 | INFO     | 
[2026-01-15 02:20:00] 2026-01-15 07:19:28,170 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-15 02:20:00] 2026-01-15 07:19:28,193 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,193 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,193 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,193 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,195 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,195 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,195 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,195 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,195 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,195 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,196 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,196 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 02:20:00] 2026-01-15 07:19:28,196 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,196 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 02:20:00] 2026-01-15 07:19:28,196 | INFO     | job 6970285826 has completed (purged errors)
[2026-01-15 02:20:00] 2026-01-15 07:19:28,197 | INFO     | overall cleanup function is called
[2026-01-15 02:20:00] 2026-01-15 07:19:29,205 | INFO     | --- collectZombieJob: --- 10, [3085]
[2026-01-15 02:20:00] 2026-01-15 07:19:29,205 | INFO     | zombie collector waiting for pid 3085
[2026-01-15 02:20:00] 2026-01-15 07:19:29,205 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 02:20:00] 2026-01-15 07:19:29,205 | INFO     | collected zombie processes
[2026-01-15 02:20:00] 2026-01-15 07:19:29,205 | INFO     | will attempt to kill all subprocesses of pid=3085
[2026-01-15 02:20:00] 2026-01-15 07:19:29,296 | INFO     | process IDs to be killed: [3085] (in reverse order)
[2026-01-15 02:20:00] 2026-01-15 07:19:29,346 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 02:20:00] 2026-01-15 07:19:29,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 02:20:00] 2026-01-15 07:19:29,349 | INFO     | did not find any defunct processes belonging to 3085
[2026-01-15 02:20:00] 2026-01-15 07:19:29,351 | INFO     | did not find any defunct processes belonging to 3085
[2026-01-15 02:20:00] 2026-01-15 07:19:29,352 | INFO     | ready for new job
[2026-01-15 02:20:00] 2026-01-15 07:19:29,352 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 02:20:00] 2026-01-15 07:19:29,353 | INFO     | ***************************************
[2026-01-15 02:20:00] 2026-01-15 07:19:29,353 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 02:20:00] 2026-01-15 07:19:29,353 | INFO     | ***************************************
[2026-01-15 02:20:00] 2026-01-15 07:19:29,353 | INFO     | 
[2026-01-15 02:20:00] 2026-01-15 07:19:29,354 | INFO     | architecture information:
[2026-01-15 02:20:00] 2026-01-15 07:19:29,354 | INFO     | executing command: cat /etc/os-release
[2026-01-15 02:20:00] 2026-01-15 07:19:29,369 | INFO     | cat /etc/os-release:
[2026-01-15 02:20:00] NAME="CentOS Linux"
[2026-01-15 02:20:00] VERSION="7 (Core)"
[2026-01-15 02:20:00] ID="centos"
[2026-01-15 02:20:00] ID_LIKE="rhel fedora"
[2026-01-15 02:20:00] VERSION_ID="7"
[2026-01-15 02:20:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 02:20:00] ANSI_COLOR="0;31"
[2026-01-15 02:20:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 02:20:00] HOME_URL="https://www.centos.org/"
[2026-01-15 02:20:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 02:20:00] 
[2026-01-15 02:20:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 02:20:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 02:20:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 02:20:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 02:20:00] 
[2026-01-15 02:20:00] 2026-01-15 07:19:29,369 | INFO     | ***************************************
[2026-01-15 02:20:00] 2026-01-15 07:19:29,872 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-15 02:20:00] 2026-01-15 07:19:29,888 | INFO     | sufficient remaining disk space (28651290624 B)
[2026-01-15 02:20:00] 2026-01-15 07:19:29,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 02:20:00] 2026-01-15 07:19:29,889 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 02:20:00] 2026-01-15 07:19:29,889 | INFO     | update_server=False
[2026-01-15 02:20:00] 2026-01-15 07:19:29,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 02:20:00] 2026-01-15 07:19:29,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 02:20:00] 2026-01-15 07:19:29,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 02:20:00] 2026-01-15 07:19:30,219 | INFO     | all data control threads have been joined
[2026-01-15 02:20:00] 2026-01-15 07:19:30,377 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 02:20:00] 2026-01-15 07:19:30,377 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 02:20:00] 2026-01-15 07:19:30,378 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 02:20:00] 2026-01-15 07:19:30,378 | INFO     | will abort loop
[2026-01-15 02:20:00] 2026-01-15 07:19:30,895 | INFO     | [job] retrieve thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:30,895 | INFO     | [job] queue monitor thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:30,924 | INFO     | [job] validate thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:30,932 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:31,211 | INFO     | all payload control threads have been joined
[2026-01-15 02:20:00] 2026-01-15 07:19:31,224 | INFO     | [data] control thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:31,236 | INFO     | all job control threads have been joined
[2026-01-15 02:20:00] 2026-01-15 07:19:31,259 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:31,309 | INFO     | [payload] failed_post thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:31,341 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:31,383 | INFO     | [job] job monitor thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:31,541 | INFO     | [data] copytool_in thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:31,777 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:31,895 | INFO     | [data] copytool_out thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:32,216 | INFO     | [payload] control thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:32,240 | INFO     | [job] control thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:32,243 | INFO     | [payload] validate_post thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:32,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 02:20:00] 2026-01-15 07:19:36,594 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 02:20:00] 2026-01-15 07:19:50,804 | INFO     | [monitor] cgroup control has ended
[2026-01-15 02:20:00] 2026-01-15 07:19:52,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140509362071360)>', '<ExcThread(monitor, started 140508714235648)>']
[2026-01-15 02:20:00] 2026-01-15 07:19:57,807 | INFO     | all workflow threads have been joined
[2026-01-15 02:20:00] 2026-01-15 07:19:57,807 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 02:20:00] 2026-01-15 07:19:57,808 | INFO     | traces error code: 0
[2026-01-15 02:20:00] 2026-01-15 07:19:57,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 02:20:00] 2026-01-15 07:20:00,572 | INFO     | PID=28938 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 02:20:00] 2026-01-15 07:20:00,572 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 02:20:00] 2026-01-15 07:20:00,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 02:20:00] 2026-01-15 07:20:00,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 02:20:00] 2026-01-15 07:20:00,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 02:20:00] 2026-01-15 07:20:00,572 | INFO     | [monitor] control thread has ended
[2026-01-15 02:20:00] 2026-01-15 07:20:00,679 [wrapper] ==== pilot stdout END ====
[2026-01-15 02:20:00] 2026-01-15 07:20:00,683 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 02:20:00] 2026-01-15 07:20:00,687 [wrapper] pilotpid: 28938
[2026-01-15 02:20:00] 2026-01-15 07:20:00,690 [wrapper] Pilot exit status: 0
[2026-01-15 02:20:00] 2026-01-15 07:20:00,707 [wrapper] pandaids: 6970285826
[2026-01-15 02:20:00] 2026-01-15 07:20:00,744 [wrapper] cleanup supervisor_pilot 21663 28939
[2026-01-15 02:20:00] 2026-01-15 07:20:00,748 [wrapper] Test setup, not cleaning
[2026-01-15 02:20:00] 2026-01-15 07:20:00,752 [wrapper] apfmon messages muted
[2026-01-15 02:20:00] 2026-01-15 07:20:00,756 [wrapper] ==== wrapper stdout END ====
[2026-01-15 02:20:00] 2026-01-15 07:20:00,760 [wrapper] ==== wrapper stderr END ====
[2026-01-15 02:20:00]  *** Error codes and diagnostics ***
[2026-01-15 02:20:00]     "exeErrorCode": 0,
[2026-01-15 02:20:00]     "exeErrorDiag": "",
[2026-01-15 02:20:00]     "pilotErrorCode": 0,
[2026-01-15 02:20:00]     "pilotErrorDiag": "",
[2026-01-15 02:20:00]  *** Listing of results directory ***
[2026-01-15 02:20:00] total 728588
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas    579449 Jan 14 22:00 pilot3.tar.gz
[2026-01-15 02:20:00] -rwx------ 1 boincer umatlas     36322 Jan 14 22:02 runpilot2-wrapper.sh
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas      5112 Jan 14 22:05 queuedata.json
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas       100 Jan 15 01:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 02:20:00] -rwxr-xr-x 1 boincer umatlas      7986 Jan 15 01:30 run_atlas
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas       105 Jan 15 01:30 job.xml
[2026-01-15 02:20:00] -rw-r--r-- 2 boincer umatlas 590165310 Jan 15 01:30 EVNT.32794306._000948.pool.root.1
[2026-01-15 02:20:00] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 01:30 start_atlas.sh
[2026-01-15 02:20:00] drwxrwx--x 2 boincer umatlas      4096 Jan 15 01:30 shared
[2026-01-15 02:20:00] -rw-r--r-- 2 boincer umatlas    592408 Jan 15 01:30 input.tar.gz
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas         0 Jan 15 01:30 boinc_lockfile
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas      2507 Jan 15 01:30 pandaJob.out
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas        57 Jan 15 01:30 setup.sh.local
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas    999472 Jan 15 01:30 agis_schedconf.cvmfs.json
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas   1516246 Jan 15 01:30 agis_ddmendpoints.agis.ALL.json
[2026-01-15 02:20:00] drwx------ 5 boincer umatlas      4096 Jan 15 01:30 pilot3
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas      5953 Jan 15 02:18 init_data.xml
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas 150376539 Jan 15 02:18 HITS.48215263._043751.pool.root.1
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas      1044 Jan 15 02:19 memory_monitor_summary.json
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas       530 Jan 15 02:19 boinc_task_state.xml
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas    359261 Jan 15 02:19 log.48215263._043751.job.log.tgz.1
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas        95 Jan 15 02:19 pilot_heartbeat.json
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas      7846 Jan 15 02:19 heartbeat.json
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas      8192 Jan 15 02:19 boinc_mmap_file
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas        27 Jan 15 02:19 wrapper_checkpoint.txt
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas       745 Jan 15 02:20 pilotlog.txt
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas    443929 Jan 15 02:20 log.48215263._043751.job.log.1
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas       357 Jan 15 02:20 output.list
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas       620 Jan 15 02:20 runtime_log
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas    819200 Jan 15 02:20 result.tar.gz
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas       658 Jan 15 02:20 uKjKDmCoS08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXotKDm2rocPo.diag
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas      9344 Jan 15 02:20 runtime_log.err
[2026-01-15 02:20:00] -rw-r--r-- 1 boincer umatlas     22443 Jan 15 02:20 stderr.txt
[2026-01-15 02:20:00] HITS file was successfully produced:
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas 150376539 Jan 15 02:18 shared/HITS.pool.root.1
[2026-01-15 02:20:00]  *** Contents of shared directory: ***
[2026-01-15 02:20:00] total 724596
[2026-01-15 02:20:00] -rw-r--r-- 2 boincer umatlas 590165310 Jan 15 01:30 ATLAS.root_0
[2026-01-15 02:20:00] -rw-r--r-- 2 boincer umatlas     15847 Jan 15 01:30 start_atlas.sh
[2026-01-15 02:20:00] -rw-r--r-- 2 boincer umatlas    592408 Jan 15 01:30 input.tar.gz
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas 150376539 Jan 15 02:18 HITS.pool.root.1
[2026-01-15 02:20:00] -rw------- 1 boincer umatlas    819200 Jan 15 02:20 result.tar.gz
02:20:02 (24895): run_atlas exited; CPU time 29548.594298
02:20:02 (24895): called boinc_finish(0)

</stderr_txt>
]]>

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