Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:17:38 (3666044): wrapper (7.7.26015): starting
07:17:38 (3666044): wrapper: running run_atlas (--nthreads 3)
[2026-01-15 07:17:38] Arguments: --nthreads 3
[2026-01-15 07:17:38] Threads: 3
[2026-01-15 07:17:38] Checking for CVMFS
[2026-01-15 07:17:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 07:17:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 07:17:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 07:17:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 07:17:38] 2.9.2.0 2866369 2016 80884 155158 3 57 23898445 36864000 0 130560 0 2179391 99.992 84185 3329 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 07:17:38] CVMFS is ok
[2026-01-15 07:17:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 07:17:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 07:17:38] Further information can be found at the LHC@home message board.
[2026-01-15 07:17:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 07:17:38] Checking for apptainer binary...
[2026-01-15 07:17:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 07:17:38] Running /usr/bin/apptainer --version
[2026-01-15 07:17:38] apptainer version 1.4.1-1.1
[2026-01-15 07:17:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 07:17:38] magicA161a
[2026-01-15 07:17:38] apptainer works
[2026-01-15 07:17:38] Set ATHENA_PROC_NUMBER=3
[2026-01-15 07:17:38] Set ATHENA_CORE_NUMBER=3
[2026-01-15 07:17:38] Starting ATLAS job with PandaID=6970070153
[2026-01-15 07:17:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 08:12:53]  *** The last 200 lines of the pilot log: ***
[2026-01-15 08:12:53] 2026-01-15 07:12:11,199 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | job 6970070153 has completed (purged errors)
[2026-01-15 08:12:53] 2026-01-15 07:12:11,200 | INFO     | overall cleanup function is called
[2026-01-15 08:12:53] 2026-01-15 07:12:12,207 | INFO     | --- collectZombieJob: --- 10, [3676215]
[2026-01-15 08:12:53] 2026-01-15 07:12:12,207 | INFO     | zombie collector waiting for pid 3676215
[2026-01-15 08:12:53] 2026-01-15 07:12:12,207 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 08:12:53] 2026-01-15 07:12:12,207 | INFO     | collected zombie processes
[2026-01-15 08:12:53] 2026-01-15 07:12:12,207 | INFO     | will attempt to kill all subprocesses of pid=3676215
[2026-01-15 08:12:53] 2026-01-15 07:12:12,249 | INFO     | process IDs to be killed: [3676215] (in reverse order)
[2026-01-15 08:12:53] 2026-01-15 07:12:12,272 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 08:12:53] 2026-01-15 07:12:12,273 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 08:12:53] 2026-01-15 07:12:12,274 | INFO     | did not find any defunct processes belonging to 3676215
[2026-01-15 08:12:53] 2026-01-15 07:12:12,275 | INFO     | did not find any defunct processes belonging to 3676215
[2026-01-15 08:12:53] 2026-01-15 07:12:12,275 | INFO     | ready for new job
[2026-01-15 08:12:53] 2026-01-15 07:12:12,275 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 08:12:53] 2026-01-15 07:12:12,276 | INFO     | ***************************************
[2026-01-15 08:12:53] 2026-01-15 07:12:12,276 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 08:12:53] 2026-01-15 07:12:12,276 | INFO     | ***************************************
[2026-01-15 08:12:53] 2026-01-15 07:12:12,276 | INFO     | 
[2026-01-15 08:12:53] 2026-01-15 07:12:12,276 | INFO     | architecture information:
[2026-01-15 08:12:53] 2026-01-15 07:12:12,276 | INFO     | executing command: cat /etc/os-release
[2026-01-15 08:12:53] 2026-01-15 07:12:12,284 | INFO     | cat /etc/os-release:
[2026-01-15 08:12:53] NAME="CentOS Linux"
[2026-01-15 08:12:53] VERSION="7 (Core)"
[2026-01-15 08:12:53] ID="centos"
[2026-01-15 08:12:53] ID_LIKE="rhel fedora"
[2026-01-15 08:12:53] VERSION_ID="7"
[2026-01-15 08:12:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 08:12:53] ANSI_COLOR="0;31"
[2026-01-15 08:12:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 08:12:53] HOME_URL="https://www.centos.org/"
[2026-01-15 08:12:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 08:12:53] 
[2026-01-15 08:12:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 08:12:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 08:12:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 08:12:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 08:12:53] 
[2026-01-15 08:12:53] 2026-01-15 07:12:12,284 | INFO     | ***************************************
[2026-01-15 08:12:53] 2026-01-15 07:12:12,788 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 08:12:53] 2026-01-15 07:12:12,800 | INFO     | sufficient remaining disk space (380767305728 B)
[2026-01-15 08:12:53] 2026-01-15 07:12:12,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 08:12:53] 2026-01-15 07:12:12,801 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 08:12:53] 2026-01-15 07:12:12,801 | INFO     | update_server=False
[2026-01-15 08:12:53] 2026-01-15 07:12:12,801 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 08:12:53] 2026-01-15 07:12:12,801 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 08:12:53] 2026-01-15 07:12:12,801 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 08:12:53] 2026-01-15 07:12:12,801 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 08:12:53] 2026-01-15 07:12:12,801 | INFO     | aborting loop
[2026-01-15 08:12:53] 2026-01-15 07:12:12,964 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 08:12:53] 2026-01-15 07:12:13,405 | INFO     | all data control threads have been joined
[2026-01-15 08:12:53] 2026-01-15 07:12:13,468 | INFO     | job.realtimelogging is not enabled
[2026-01-15 08:12:53] 2026-01-15 07:12:13,505 | INFO     | all job control threads have been joined
[2026-01-15 08:12:53] 2026-01-15 07:12:13,641 | INFO     | all payload control threads have been joined
[2026-01-15 08:12:53] 2026-01-15 07:12:13,806 | INFO     | [job] retrieve thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:13,806 | INFO     | [job] queue monitor thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:13,807 | INFO     | [job] job monitor thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,020 | INFO     | [data] copytool_in thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,068 | INFO     | [payload] validate_post thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,410 | INFO     | [data] control thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,474 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,511 | INFO     | [job] control thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,552 | INFO     | [job] validate thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,603 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,647 | INFO     | [payload] control thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,650 | INFO     | [payload] failed_post thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,684 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:14,805 | INFO     | [data] copytool_out thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:15,138 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:16,970 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 08:12:53] 2026-01-15 07:12:43,194 | INFO     | PID=3669772 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 08:12:53] 2026-01-15 07:12:43,194 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 08:12:53] 2026-01-15 07:12:43,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 08:12:53] 2026-01-15 07:12:43,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 08:12:53] 2026-01-15 07:12:47,446 | INFO     | [monitor] cgroup control has ended
[2026-01-15 08:12:53] 2026-01-15 07:12:48,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140493769193280)>', '<ExcThread(monitor, started 140493144979200)>']
[2026-01-15 08:12:53] 2026-01-15 07:12:49,226 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 08:12:53] 2026-01-15 07:12:49,227 | INFO     | [monitor] control thread has ended
[2026-01-15 08:12:53] 2026-01-15 07:12:53,709 | INFO     | all workflow threads have been joined
[2026-01-15 08:12:53] 2026-01-15 07:12:53,709 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 08:12:53] 2026-01-15 07:12:53,709 | INFO     | traces error code: 0
[2026-01-15 08:12:53] 2026-01-15 07:12:53,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 08:12:53] 2026-01-15 07:12:53,760 [wrapper] ==== pilot stdout END ====
[2026-01-15 08:12:53] 2026-01-15 07:12:53,763 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 08:12:53] 2026-01-15 07:12:53,765 [wrapper] pilotpid: 3669772
[2026-01-15 08:12:53] 2026-01-15 07:12:53,767 [wrapper] Pilot exit status: 0
[2026-01-15 08:12:53] 2026-01-15 07:12:53,775 [wrapper] pandaids: 6970070153
[2026-01-15 08:12:53] 2026-01-15 07:12:53,791 [wrapper] cleanup supervisor_pilot 3685427 3669773
[2026-01-15 08:12:53] 2026-01-15 07:12:53,793 [wrapper] Test setup, not cleaning
[2026-01-15 08:12:53] 2026-01-15 07:12:53,795 [wrapper] apfmon messages muted
[2026-01-15 08:12:53] 2026-01-15 07:12:53,797 [wrapper] ==== wrapper stdout END ====
[2026-01-15 08:12:53] 2026-01-15 07:12:53,800 [wrapper] ==== wrapper stderr END ====
[2026-01-15 08:12:53]  *** Error codes and diagnostics ***
[2026-01-15 08:12:53]     "exeErrorCode": 0,
[2026-01-15 08:12:53]     "exeErrorDiag": "",
[2026-01-15 08:12:53]     "pilotErrorCode": 0,
[2026-01-15 08:12:53]     "pilotErrorDiag": "",
[2026-01-15 08:12:53]  *** Listing of results directory ***
[2026-01-15 08:12:53] total 738172
[2026-01-15 08:12:53] -rwx------ 1 boinc boinc     36322 Jan 15 04:00 runpilot2-wrapper.sh
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc      5112 Jan 15 04:00 queuedata.json
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc    579449 Jan 15 04:00 pilot3.tar.gz
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc       100 Jan 15 07:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 08:12:53] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 07:17 run_atlas
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc       105 Jan 15 07:17 job.xml
[2026-01-15 08:12:53] -rw-r--r-- 2 boinc boinc 596160149 Jan 15 07:17 EVNT.32794306._001674.pool.root.1
[2026-01-15 08:12:53] -rw-r--r-- 2 boinc boinc    592394 Jan 15 07:17 input.tar.gz
[2026-01-15 08:12:53] -rw-r--r-- 2 boinc boinc     15847 Jan 15 07:17 start_atlas.sh
[2026-01-15 08:12:53] drwxrwx--x 2 boinc boinc      4096 Jan 15 07:17 shared
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc         0 Jan 15 07:17 boinc_setup_complete
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc      6448 Jan 15 07:17 init_data.xml
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc         0 Jan 15 07:17 boinc_lockfile
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc      2509 Jan 15 07:17 pandaJob.out
[2026-01-15 08:12:53] -rw------- 1 boinc boinc    999472 Jan 15 07:17 agis_schedconf.cvmfs.json
[2026-01-15 08:12:53] -rw------- 1 boinc boinc   1516246 Jan 15 07:17 agis_ddmendpoints.agis.ALL.json
[2026-01-15 08:12:53] drwx------ 5 boinc boinc      4096 Jan 15 07:17 pilot3
[2026-01-15 08:12:53] -rw------- 1 boinc boinc 154355527 Jan 15 08:11 HITS.48215263._041992.pool.root.1
[2026-01-15 08:12:53] -rw------- 1 boinc boinc        95 Jan 15 08:11 pilot_heartbeat.json
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc       530 Jan 15 08:12 boinc_task_state.xml
[2026-01-15 08:12:53] -rw------- 1 boinc boinc      1009 Jan 15 08:12 memory_monitor_summary.json
[2026-01-15 08:12:53] -rw------- 1 boinc boinc    227358 Jan 15 08:12 log.48215263._041992.job.log.tgz.1
[2026-01-15 08:12:53] -rw------- 1 boinc boinc      7746 Jan 15 08:12 heartbeat.json
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc      8192 Jan 15 08:12 boinc_mmap_file
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc        26 Jan 15 08:12 wrapper_checkpoint.txt
[2026-01-15 08:12:53] -rw------- 1 boinc boinc      4824 Jan 15 08:12 pilotlog.txt
[2026-01-15 08:12:53] -rw------- 1 boinc boinc    497940 Jan 15 08:12 log.48215263._041992.job.log.1
[2026-01-15 08:12:53] -rw------- 1 boinc boinc       357 Jan 15 08:12 output.list
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc       620 Jan 15 08:12 runtime_log
[2026-01-15 08:12:53] -rw------- 1 boinc boinc    747520 Jan 15 08:12 result.tar.gz
[2026-01-15 08:12:53] -rw------- 1 boinc boinc       660 Jan 15 08:12 zAPMDm7lS08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDftKDm67WPRm.diag
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc      8917 Jan 15 08:12 runtime_log.err
[2026-01-15 08:12:53] -rw-r--r-- 1 boinc boinc     12928 Jan 15 08:12 stderr.txt
[2026-01-15 08:12:53] HITS file was successfully produced:
[2026-01-15 08:12:53] -rw------- 1 boinc boinc 154355527 Jan 15 08:11 shared/HITS.pool.root.1
[2026-01-15 08:12:53]  *** Contents of shared directory: ***
[2026-01-15 08:12:53] total 734264
[2026-01-15 08:12:53] -rw-r--r-- 2 boinc boinc 596160149 Jan 15 07:17 ATLAS.root_0
[2026-01-15 08:12:53] -rw-r--r-- 2 boinc boinc    592394 Jan 15 07:17 input.tar.gz
[2026-01-15 08:12:53] -rw-r--r-- 2 boinc boinc     15847 Jan 15 07:17 start_atlas.sh
[2026-01-15 08:12:53] -rw------- 1 boinc boinc 154355527 Jan 15 08:11 HITS.pool.root.1
[2026-01-15 08:12:53] -rw------- 1 boinc boinc    747520 Jan 15 08:12 result.tar.gz
08:12:55 (3666044): run_atlas exited; CPU time 9136.762021
08:12:55 (3666044): called boinc_finish(0)

</stderr_txt>
]]>

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