Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
13:03:47 (557786): wrapper (7.7.26015): starting
13:03:47 (557786): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 13:03:47] Arguments: --nthreads 12
[2026-01-16 13:03:47] Threads: 12
[2026-01-16 13:03:47] Checking for CVMFS
[2026-01-16 13:03:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 13:03:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 13:03:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 13:03:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 13:03:48] 2.13.3.0 40677 10511 77620 155208 3 236 4036349 4096001 18553 130560 0 85330725 99.982 1154836 230 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 13:03:48] CVMFS is ok
[2026-01-16 13:03:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 13:03:48] Checking for apptainer binary...
[2026-01-16 13:03:48] apptainer is not installed, using version from CVMFS
[2026-01-16 13:03:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 13:03:50] epyc7v12
[2026-01-16 13:03:50] apptainer works
[2026-01-16 13:03:50] Set ATHENA_PROC_NUMBER=12
[2026-01-16 13:03:50] Set ATHENA_CORE_NUMBER=12
[2026-01-16 13:03:50] Starting ATLAS job with PandaID=6969844951
[2026-01-16 13:03:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31427/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 14:40:36]  *** The last 200 lines of the pilot log: ***
[2026-01-16 14:40:36] 2026-01-16 14:39:43,486 | WARNING  | process 576061 can no longer be monitored (due to stat problems) - aborting
[2026-01-16 14:40:36] 2026-01-16 14:39:43,486 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/1/PanDA_Pilot-6969844951/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 14:40:36] 2026-01-16 14:39:43,691 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 14:40:36] 2026-01-16 14:39:44,503 | INFO     | time since job start (5724s) is within the limit (349056.0s)
[2026-01-16 14:40:36] 2026-01-16 14:39:45,108 | INFO     | number of running child processes to parent process 576061: 1
[2026-01-16 14:40:36] 2026-01-16 14:39:45,108 | INFO     | maximum number of monitored processes: 6
[2026-01-16 14:40:36] 2026-01-16 14:39:45,312 | INFO     | job 6969844951 has state=finished
[2026-01-16 14:40:36] 2026-01-16 14:39:45,312 | INFO     | preparing for final server update for job 6969844951 in state='finished'
[2026-01-16 14:40:36] 2026-01-16 14:39:45,958 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-16 14:40:36] 2026-01-16 14:39:45,960 | INFO     | this job has now completed (state=finished)
[2026-01-16 14:40:36] 2026-01-16 14:39:45,960 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 14:40:36] 2026-01-16 14:39:45,961 | INFO     | log transfer has been attempted: DONE
[2026-01-16 14:40:36] 2026-01-16 14:39:45,961 | INFO     | job 6969844951 has finished - writing final server update
[2026-01-16 14:40:36] 2026-01-16 14:39:45,963 | INFO     | total number of processed events: 400 (read)
[2026-01-16 14:40:36] 2026-01-16 14:39:45,963 | INFO     | executing command: lscpu
[2026-01-16 14:40:36] 2026-01-16 14:39:46,155 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 14:40:36] 2026-01-16 14:39:46,509 | INFO     | time since job start (5726s) is within the limit (349056.0s)
[2026-01-16 14:40:36] 2026-01-16 14:39:47,615 | INFO     | monitor loop #376: job 0:6969844951 is in state 'finished'
[2026-01-16 14:40:36] 2026-01-16 14:39:47,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:40:36] 2026-01-16 14:39:48,886 | INFO     | PID=563861 has CPU usage=20.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 14:40:36] 2026-01-16 14:39:48,889 | INFO     | .. there are 22 such processes running
[2026-01-16 14:40:36] 2026-01-16 14:39:49,890 | INFO     | time since job start (5729s) is within the limit (349056.0s)
[2026-01-16 14:40:36] 2026-01-16 14:39:50,121 | INFO     | monitor loop #377: job 0:6969844951 is in state 'finished'
[2026-01-16 14:40:36] 2026-01-16 14:39:50,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:40:36] 2026-01-16 14:39:51,897 | INFO     | time since job start (5731s) is within the limit (349056.0s)
[2026-01-16 14:40:36] 2026-01-16 14:39:52,624 | INFO     | monitor loop #378: job 0:6969844951 is in state 'finished'
[2026-01-16 14:40:36] 2026-01-16 14:39:52,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:40:36] 2026-01-16 14:39:53,902 | INFO     | time since job start (5733s) is within the limit (349056.0s)
[2026-01-16 14:40:36] 2026-01-16 14:39:55,127 | INFO     | monitor loop #379: job 0:6969844951 is in state 'finished'
[2026-01-16 14:40:36] 2026-01-16 14:39:55,127 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:40:36] 2026-01-16 14:39:55,907 | INFO     | time since job start (5735s) is within the limit (349056.0s)
[2026-01-16 14:40:36] 2026-01-16 14:39:57,633 | INFO     | monitor loop #380: job 0:6969844951 is in state 'finished'
[2026-01-16 14:40:36] 2026-01-16 14:39:57,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 14:40:36] 2026-01-16 14:39:57,914 | INFO     | time since job start (5737s) is within the limit (349056.0s)
[2026-01-16 14:40:36] 2026-01-16 14:39:58,449 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 14:40:36] 2026-01-16 14:39:58,495 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2402.230164062499
[2026-01-16 14:40:36] 2026-01-16 14:39:58,548 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/1/PanDA_Pilot-6969844951/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 14:40:36] 2026-01-16 14:39:58,551 | INFO     | extracted standard info from prmon json
[2026-01-16 14:40:36] 2026-01-16 14:39:58,552 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 14:40:36] 2026-01-16 14:39:58,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 14:40:36] 2026-01-16 14:39:58,553 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 14:40:36] 2026-01-16 14:39:58,553 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 14:40:36] 2026-01-16 14:39:58,556 | INFO     | fitting pss+swap vs Time
[2026-01-16 14:40:36] 2026-01-16 14:39:58,556 | INFO     | sum of square deviations: 197203697.5
[2026-01-16 14:40:36] 2026-01-16 14:39:58,556 | INFO     | sum of deviations: 10745151708.0
[2026-01-16 14:40:36] 2026-01-16 14:39:58,556 | INFO     | mean x: 1768571625.5
[2026-01-16 14:40:36] 2026-01-16 14:39:58,557 | INFO     | mean y: 2659749.581395349
[2026-01-16 14:40:36] 2026-01-16 14:39:58,557 | INFO     | intersect: -96362523375.15015
[2026-01-16 14:40:36] 2026-01-16 14:39:58,561 | INFO     | chi2: 0.2573882532483443
[2026-01-16 14:40:36] 2026-01-16 14:39:58,561 | INFO     | current memory leak: 54.49 B/s (using 86 data points, chi2=0.26)
[2026-01-16 14:40:36] 2026-01-16 14:39:58,562 | INFO     | could have reported an average CPU frequency of 2398 MHz (7 samples)
[2026-01-16 14:40:36] 2026-01-16 14:39:58,562 | INFO     | ..............................
[2026-01-16 14:40:36] 2026-01-16 14:39:58,562 | INFO     | . Timing measurements:
[2026-01-16 14:40:36] 2026-01-16 14:39:58,562 | INFO     | . get job = 0 s
[2026-01-16 14:40:36] 2026-01-16 14:39:58,562 | INFO     | . initial setup = 3 s
[2026-01-16 14:40:36] 2026-01-16 14:39:58,562 | INFO     | . payload setup = 17 s
[2026-01-16 14:40:36] 2026-01-16 14:39:58,562 | INFO     | . stage-in = 0 s
[2026-01-16 14:40:36] 2026-01-16 14:39:58,562 | INFO     | . payload execution = 5661 s
[2026-01-16 14:40:36] 2026-01-16 14:39:58,562 | INFO     | . stage-out = 1 s
[2026-01-16 14:40:36] 2026-01-16 14:39:58,563 | INFO     | . log creation = 0 s
[2026-01-16 14:40:36] 2026-01-16 14:39:58,563 | INFO     | ..............................
[2026-01-16 14:40:36] 2026-01-16 14:39:58,819 | INFO     | 
[2026-01-16 14:40:36] 2026-01-16 14:39:58,819 | INFO     | job summary report
[2026-01-16 14:40:36] 2026-01-16 14:39:58,819 | INFO     | --------------------------------------------------
[2026-01-16 14:40:36] 2026-01-16 14:39:58,819 | INFO     | PanDA job id: 6969844951
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | task id: 48215263
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | errors: (none)
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | pilot state: finished 
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | transexitcode: 0
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | exeerrorcode: 0
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | exeerrordiag: 
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | exitcode: 0
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | exitmsg: OK
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | cpuconsumptiontime: 30540 s
[2026-01-16 14:40:36] 2026-01-16 14:39:58,820 | INFO     | nevents: 400
[2026-01-16 14:40:36] 2026-01-16 14:39:58,821 | INFO     | neventsw: 0
[2026-01-16 14:40:36] 2026-01-16 14:39:58,821 | INFO     | pid: 576061
[2026-01-16 14:40:36] 2026-01-16 14:39:58,821 | INFO     | pgrp: 576061
[2026-01-16 14:40:36] 2026-01-16 14:39:58,821 | INFO     | corecount: 12
[2026-01-16 14:40:36] 2026-01-16 14:39:58,821 | INFO     | event service: False
[2026-01-16 14:40:36] 2026-01-16 14:39:58,821 | INFO     | sizes: {0: 2283124, 1: 2284003, 2: 2284003, 13: 2284031, 15: 2284349, 23: 2284377, 5682: 2311232, 5683: 2311231, 5686: 2320387, 5701: 2320525}
[2026-01-16 14:40:36] 2026-01-16 14:39:58,821 | INFO     | --------------------------------------------------
[2026-01-16 14:40:36] 2026-01-16 14:39:58,821 | INFO     | 
[2026-01-16 14:40:36] 2026-01-16 14:39:58,821 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31427/slots/1
[2026-01-16 14:40:36] 2026-01-16 14:39:58,896 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,896 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,896 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,898 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,898 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,900 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 14:40:36] 2026-01-16 14:39:58,900 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,900 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 14:40:36] 2026-01-16 14:39:58,900 | INFO     | job 6969844951 has completed (purged errors)
[2026-01-16 14:40:36] 2026-01-16 14:39:58,901 | INFO     | overall cleanup function is called
[2026-01-16 14:40:36] 2026-01-16 14:39:59,918 | INFO     | --- collectZombieJob: --- 10, [576061]
[2026-01-16 14:40:36] 2026-01-16 14:39:59,918 | INFO     | zombie collector waiting for pid 576061
[2026-01-16 14:40:36] 2026-01-16 14:39:59,918 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 14:40:36] 2026-01-16 14:39:59,919 | INFO     | collected zombie processes
[2026-01-16 14:40:36] 2026-01-16 14:39:59,919 | INFO     | will attempt to kill all subprocesses of pid=576061
[2026-01-16 14:40:36] 2026-01-16 14:40:01,130 | INFO     | process IDs to be killed: [576061] (in reverse order)
[2026-01-16 14:40:36] 2026-01-16 14:40:01,593 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 14:40:36] 2026-01-16 14:40:01,594 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 14:40:36] 2026-01-16 14:40:01,631 | INFO     | did not find any defunct processes belonging to 576061
[2026-01-16 14:40:36] 2026-01-16 14:40:01,667 | INFO     | did not find any defunct processes belonging to 576061
[2026-01-16 14:40:36] 2026-01-16 14:40:01,668 | INFO     | ready for new job
[2026-01-16 14:40:36] 2026-01-16 14:40:01,668 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 14:40:36] 2026-01-16 14:40:01,673 | INFO     | ***************************************
[2026-01-16 14:40:36] 2026-01-16 14:40:01,673 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 14:40:36] 2026-01-16 14:40:01,673 | INFO     | ***************************************
[2026-01-16 14:40:36] 2026-01-16 14:40:01,673 | INFO     | 
[2026-01-16 14:40:36] 2026-01-16 14:40:01,693 | INFO     | architecture information:
[2026-01-16 14:40:36] 2026-01-16 14:40:01,695 | INFO     | executing command: cat /etc/os-release
[2026-01-16 14:40:36] 2026-01-16 14:40:01,739 | INFO     | cat /etc/os-release:
[2026-01-16 14:40:36] NAME="CentOS Linux"
[2026-01-16 14:40:36] VERSION="7 (Core)"
[2026-01-16 14:40:36] ID="centos"
[2026-01-16 14:40:36] ID_LIKE="rhel fedora"
[2026-01-16 14:40:36] VERSION_ID="7"
[2026-01-16 14:40:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 14:40:36] ANSI_COLOR="0;31"
[2026-01-16 14:40:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 14:40:36] HOME_URL="https://www.centos.org/"
[2026-01-16 14:40:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 14:40:36] 
[2026-01-16 14:40:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 14:40:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 14:40:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 14:40:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 14:40:36] 
[2026-01-16 14:40:36] 2026-01-16 14:40:01,739 | INFO     | ***************************************
[2026-01-16 14:40:36] 2026-01-16 14:40:02,241 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31427/slots/1
[2026-01-16 14:40:36] 2026-01-16 14:40:02,286 | INFO     | sufficient remaining disk space (297301704704 B)
[2026-01-16 14:40:36] 2026-01-16 14:40:02,287 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 14:40:36] 2026-01-16 14:40:02,287 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 14:40:36] 2026-01-16 14:40:02,287 | INFO     | update_server=False
[2026-01-16 14:40:36] 2026-01-16 14:40:02,287 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 14:40:36] 2026-01-16 14:40:02,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 14:40:36] 2026-01-16 14:40:02,466 | INFO     | all data control threads have been joined
[2026-01-16 14:40:36] 2026-01-16 14:40:02,647 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-16 14:40:36] 2026-01-16 14:40:02,647 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-16 14:40:36] 2026-01-16 14:40:02,647 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 14:40:36] 2026-01-16 14:40:02,648 | INFO     | will abort loop
[2026-01-16 14:40:36] 2026-01-16 14:40:02,770 | INFO     | all job control threads have been joined
[2026-01-16 14:40:36] 2026-01-16 14:40:02,872 | INFO     | all payload control threads have been joined
[2026-01-16 14:40:36] 2026-01-16 14:40:03,298 | INFO     | [job] retrieve thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:03,391 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:03,400 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:03,471 | INFO     | [data] control thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:03,557 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 14:40:36] 2026-01-16 14:40:03,652 | INFO     | [job] job monitor thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:03,775 | INFO     | [job] control thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:03,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 14:40:36] 2026-01-16 14:40:03,877 | INFO     | [payload] control thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:04,013 | INFO     | [payload] validate_post thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:04,058 | INFO     | [data] copytool_in thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:04,224 | INFO     | [job] validate thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:04,292 | INFO     | [data] copytool_out thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:04,787 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:04,788 | INFO     | [job] queue monitor thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:04,846 | INFO     | [payload] failed_post thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:07,562 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:12,952 | INFO     | job.realtimelogging is not enabled
[2026-01-16 14:40:36] 2026-01-16 14:40:13,957 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 14:40:36] 2026-01-16 14:40:29,751 | INFO     | [monitor] cgroup control has ended
[2026-01-16 14:40:36] 2026-01-16 14:40:30,689 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130545721247552)>', '<ExcThread(monitor, started 130545161844480)>']
[2026-01-16 14:40:36] 2026-01-16 14:40:32,017 | INFO     | PID=563861 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 14:40:36] 2026-01-16 14:40:32,017 | INFO     | .. there are 22 such processes running
[2026-01-16 14:40:36] 2026-01-16 14:40:32,020 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 14:40:36] 2026-01-16 14:40:32,020 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 14:40:36] 2026-01-16 14:40:32,020 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 14:40:36] 2026-01-16 14:40:32,020 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 14:40:36] 2026-01-16 14:40:32,020 | INFO     | [monitor] control thread has ended
[2026-01-16 14:40:36] 2026-01-16 14:40:35,717 | INFO     | all workflow threads have been joined
[2026-01-16 14:40:36] 2026-01-16 14:40:35,717 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 14:40:36] 2026-01-16 14:40:35,718 | INFO     | traces error code: 0
[2026-01-16 14:40:36] 2026-01-16 14:40:35,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 14:40:36] 2026-01-16 14:40:36,204 [wrapper] ==== pilot stdout END ====
[2026-01-16 14:40:36] 2026-01-16 14:40:36,212 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 14:40:36] 2026-01-16 14:40:36,219 [wrapper] pilotpid: 563861
[2026-01-16 14:40:36] 2026-01-16 14:40:36,227 [wrapper] Pilot exit status: 0
[2026-01-16 14:40:36] 2026-01-16 14:40:36,261 [wrapper] pandaids: 6969844951
[2026-01-16 14:40:36] 2026-01-16 14:40:36,480 [wrapper] cleanup supervisor_pilot 1060782 563862
[2026-01-16 14:40:36] ./runpilot2-wrapper.sh: line 616: 1060782 Terminated              sleep 900
[2026-01-16 14:40:36] 2026-01-16 14:40:36,493 [wrapper] Test setup, not cleaning
[2026-01-16 14:40:36] 2026-01-16 14:40:36,505 [wrapper] apfmon messages muted
[2026-01-16 14:40:36] 2026-01-16 14:40:36,513 [wrapper] ==== wrapper stdout END ====
[2026-01-16 14:40:36] 2026-01-16 14:40:36,523 [wrapper] ==== wrapper stderr END ====
[2026-01-16 14:40:36]  *** Error codes and diagnostics ***
[2026-01-16 14:40:36]     "exeErrorCode": 0,
[2026-01-16 14:40:36]     "exeErrorDiag": "",
[2026-01-16 14:40:36]     "pilotErrorCode": 0,
[2026-01-16 14:40:36]     "pilotErrorDiag": "",
[2026-01-16 14:40:36]  *** Listing of results directory ***
[2026-01-16 14:40:36] total 734928
[2026-01-16 14:40:36] -rw-r--r-- 1 boinc boinc      5112 Jan 14 23:30 queuedata.json
[2026-01-16 14:40:36] -rw-r--r-- 1 boinc boinc    579449 Jan 14 23:30 pilot3.tar.gz
[2026-01-16 14:40:36] -rwx------ 1 boinc boinc     36322 Jan 14 23:31 runpilot2-wrapper.sh
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc       100 Jan 16 13:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 14:40:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 13:03 run_atlas
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc       105 Jan 16 13:03 job.xml
[2026-01-16 14:40:36] -rw-r--r-- 2 boinc boinc 591649478 Jan 16 13:03 EVNT.32794306._001533.pool.root.1
[2026-01-16 14:40:36] -rw-r--r-- 2 boinc boinc     15847 Jan 16 13:03 start_atlas.sh
[2026-01-16 14:40:36] drwxrwx--x 2 boinc boinc      4096 Jan 16 13:03 shared
[2026-01-16 14:40:36] -rw-r--r-- 2 boinc boinc    592400 Jan 16 13:03 input.tar.gz
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc         0 Jan 16 13:03 boinc_setup_complete
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 13:03 init_data.xml
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc         0 Jan 16 13:03 boinc_lockfile
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc      2509 Jan 16 13:03 pandaJob.out
[2026-01-16 14:40:36] -rw------- 1 boinc boinc   1004091 Jan 16 13:04 agis_schedconf.cvmfs.json
[2026-01-16 14:40:36] -rw------- 1 boinc boinc   1516246 Jan 16 13:04 agis_ddmendpoints.agis.ALL.json
[2026-01-16 14:40:36] drwx------ 5 boinc boinc      4096 Jan 16 13:04 pilot3
[2026-01-16 14:40:36] -rw------- 1 boinc boinc 154549699 Jan 16 14:38 HITS.48215263._038424.pool.root.1
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc       531 Jan 16 14:38 boinc_task_state.xml
[2026-01-16 14:40:36] -rw------- 1 boinc boinc      1021 Jan 16 14:39 memory_monitor_summary.json
[2026-01-16 14:40:36] -rw------- 1 boinc boinc    416568 Jan 16 14:39 log.48215263._038424.job.log.tgz.1
[2026-01-16 14:40:36] -rw------- 1 boinc boinc      7729 Jan 16 14:39 heartbeat.json
[2026-01-16 14:40:36] -rw------- 1 boinc boinc        95 Jan 16 14:40 pilot_heartbeat.json
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc        27 Jan 16 14:40 wrapper_checkpoint.txt
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 14:40 boinc_mmap_file
[2026-01-16 14:40:36] -rw------- 1 boinc boinc      5105 Jan 16 14:40 pilotlog.txt
[2026-01-16 14:40:36] -rw------- 1 boinc boinc    801173 Jan 16 14:40 log.48215263._038424.job.log.1
[2026-01-16 14:40:36] -rw------- 1 boinc boinc       357 Jan 16 14:40 output.list
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc       620 Jan 16 14:40 runtime_log
[2026-01-16 14:40:36] -rw------- 1 boinc boinc   1239040 Jan 16 14:40 result.tar.gz
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 14:40 runtime_log.err
[2026-01-16 14:40:36] -rw------- 1 boinc boinc       651 Jan 16 14:40 nNLKDmuVP08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmK0mKDmVl0son.diag
[2026-01-16 14:40:36] -rw-rw-r-- 1 boinc boinc     22106 Jan 16 14:40 stderr.txt
[2026-01-16 14:40:36] HITS file was successfully produced:
[2026-01-16 14:40:36] -rw------- 1 boinc boinc 154549699 Jan 16 14:38 shared/HITS.pool.root.1
[2026-01-16 14:40:36]  *** Contents of shared directory: ***
[2026-01-16 14:40:36] total 730528
[2026-01-16 14:40:36] -rw-r--r-- 2 boinc boinc 591649478 Jan 16 13:03 ATLAS.root_0
[2026-01-16 14:40:36] -rw-r--r-- 2 boinc boinc     15847 Jan 16 13:03 start_atlas.sh
[2026-01-16 14:40:36] -rw-r--r-- 2 boinc boinc    592400 Jan 16 13:03 input.tar.gz
[2026-01-16 14:40:36] -rw------- 1 boinc boinc 154549699 Jan 16 14:38 HITS.pool.root.1
[2026-01-16 14:40:36] -rw------- 1 boinc boinc   1239040 Jan 16 14:40 result.tar.gz
14:40:38 (557786): run_atlas exited; CPU time 30859.657130
14:40:38 (557786): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN