Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
05:15:56 (2276275): wrapper (7.7.26015): starting
05:15:56 (2276275): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 05:15:56] Arguments: --nthreads 12
[2026-01-16 05:15:56] Threads: 12
[2026-01-16 05:15:56] Checking for CVMFS
[2026-01-16 05:15:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 05:15:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 05:15:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 05:15:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 05:15:57] 2.13.3.0 40677 10043 72204 155196 1 236 3969801 4096001 18906 130560 0 78402631 99.980 1136658 231 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 05:15:57] CVMFS is ok
[2026-01-16 05:15:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 05:15:57] Checking for apptainer binary...
[2026-01-16 05:15:57] apptainer is not installed, using version from CVMFS
[2026-01-16 05:15:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 05:15:59] epyc7v12
[2026-01-16 05:15:59] apptainer works
[2026-01-16 05:15:59] Set ATHENA_PROC_NUMBER=12
[2026-01-16 05:15:59] Set ATHENA_CORE_NUMBER=12
[2026-01-16 05:15:59] Starting ATLAS job with PandaID=6969524378
[2026-01-16 05:15:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31423/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 06:48:46]  *** The last 200 lines of the pilot log: ***
[2026-01-16 06:48:47] 2026-01-16 06:47:43,398 | INFO     | total size of present files: 0 B (workdir size: 4098273 B)
[2026-01-16 06:48:47] 2026-01-16 06:47:43,400 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6969524378/HITS.48215263._028445.pool.root.1 since it does n
[2026-01-16 06:48:47] 2026-01-16 06:47:43,652 | INFO     | time since job start (5473s) is within the limit (349056.0s)
[2026-01-16 06:48:47] 2026-01-16 06:47:44,535 | INFO     | number of running child processes to parent process 2290166: 1
[2026-01-16 06:48:47] 2026-01-16 06:47:44,535 | INFO     | maximum number of monitored processes: 6
[2026-01-16 06:48:47] 2026-01-16 06:47:45,659 | INFO     | time since job start (5475s) is within the limit (349056.0s)
[2026-01-16 06:48:47] 2026-01-16 06:47:45,807 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 06:48:47] 2026-01-16 06:47:47,039 | INFO     | monitor loop #357: job 0:6969524378 is in state 'finished'
[2026-01-16 06:48:47] 2026-01-16 06:47:47,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 06:48:47] 2026-01-16 06:47:47,040 | INFO     | job 6969524378 has state=finished
[2026-01-16 06:48:47] 2026-01-16 06:47:47,040 | INFO     | preparing for final server update for job 6969524378 in state='finished'
[2026-01-16 06:48:47] 2026-01-16 06:47:47,041 | INFO     | this job has now completed (state=finished)
[2026-01-16 06:48:47] 2026-01-16 06:47:47,041 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 06:48:47] 2026-01-16 06:47:47,041 | INFO     | log transfer has been attempted: DONE
[2026-01-16 06:48:47] 2026-01-16 06:47:47,041 | INFO     | job 6969524378 has finished - writing final server update
[2026-01-16 06:48:47] 2026-01-16 06:47:47,042 | INFO     | total number of processed events: 400 (read)
[2026-01-16 06:48:47] 2026-01-16 06:47:47,042 | INFO     | executing command: lscpu
[2026-01-16 06:48:47] 2026-01-16 06:47:47,217 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 06:48:47] 2026-01-16 06:47:47,669 | INFO     | time since job start (5477s) is within the limit (349056.0s)
[2026-01-16 06:48:47] 2026-01-16 06:47:49,542 | INFO     | monitor loop #358: job 0:6969524378 is in state 'finished'
[2026-01-16 06:48:47] 2026-01-16 06:47:49,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 06:48:47] 2026-01-16 06:47:49,674 | INFO     | time since job start (5479s) is within the limit (349056.0s)
[2026-01-16 06:48:47] 2026-01-16 06:47:51,684 | INFO     | time since job start (5481s) is within the limit (349056.0s)
[2026-01-16 06:48:47] 2026-01-16 06:47:52,046 | INFO     | monitor loop #359: job 0:6969524378 is in state 'finished'
[2026-01-16 06:48:47] 2026-01-16 06:47:52,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 06:48:47] 2026-01-16 06:47:53,689 | INFO     | time since job start (5483s) is within the limit (349056.0s)
[2026-01-16 06:48:47] 2026-01-16 06:47:54,549 | INFO     | monitor loop #360: job 0:6969524378 is in state 'finished'
[2026-01-16 06:48:47] 2026-01-16 06:47:54,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 06:48:47] 2026-01-16 06:47:55,696 | INFO     | time since job start (5485s) is within the limit (349056.0s)
[2026-01-16 06:48:47] 2026-01-16 06:47:57,056 | INFO     | monitor loop #361: job 0:6969524378 is in state 'finished'
[2026-01-16 06:48:47] 2026-01-16 06:47:57,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 06:48:47] 2026-01-16 06:47:57,707 | INFO     | time since job start (5487s) is within the limit (349056.0s)
[2026-01-16 06:48:47] 2026-01-16 06:47:59,559 | INFO     | monitor loop #362: job 0:6969524378 is in state 'finished'
[2026-01-16 06:48:47] 2026-01-16 06:47:59,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 06:48:47] 2026-01-16 06:47:59,712 | INFO     | time since job start (5489s) is within the limit (349056.0s)
[2026-01-16 06:48:47] 2026-01-16 06:48:00,657 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 06:48:47] 2026-01-16 06:48:00,724 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2396.3748515624998
[2026-01-16 06:48:47] 2026-01-16 06:48:00,819 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6969524378/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 06:48:47] 2026-01-16 06:48:00,820 | INFO     | extracted standard info from prmon json
[2026-01-16 06:48:47] 2026-01-16 06:48:00,820 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 06:48:47] 2026-01-16 06:48:00,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 06:48:47] 2026-01-16 06:48:00,820 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 06:48:47] 2026-01-16 06:48:00,821 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 06:48:47] 2026-01-16 06:48:00,827 | INFO     | fitting pss+swap vs Time
[2026-01-16 06:48:47] 2026-01-16 06:48:00,827 | INFO     | sum of square deviations: 170944600.5
[2026-01-16 06:48:47] 2026-01-16 06:48:00,828 | INFO     | sum of deviations: -2023010282.9999998
[2026-01-16 06:48:47] 2026-01-16 06:48:00,828 | INFO     | mean x: 1768543436.5
[2026-01-16 06:48:47] 2026-01-16 06:48:00,834 | INFO     | mean y: 2740359.0975609757
[2026-01-16 06:48:47] 2026-01-16 06:48:00,834 | INFO     | intersect: 20932220129.19218
[2026-01-16 06:48:47] 2026-01-16 06:48:00,834 | INFO     | chi2: 0.13861612116477073
[2026-01-16 06:48:47] 2026-01-16 06:48:00,835 | INFO     | current memory leak: -11.83 B/s (using 82 data points, chi2=0.14)
[2026-01-16 06:48:47] 2026-01-16 06:48:00,835 | INFO     | could have reported an average CPU frequency of 2393 MHz (7 samples)
[2026-01-16 06:48:47] 2026-01-16 06:48:00,835 | INFO     | ..............................
[2026-01-16 06:48:47] 2026-01-16 06:48:00,835 | INFO     | . Timing measurements:
[2026-01-16 06:48:47] 2026-01-16 06:48:00,835 | INFO     | . get job = 0 s
[2026-01-16 06:48:47] 2026-01-16 06:48:00,836 | INFO     | . initial setup = 2 s
[2026-01-16 06:48:47] 2026-01-16 06:48:00,836 | INFO     | . payload setup = 17 s
[2026-01-16 06:48:47] 2026-01-16 06:48:00,836 | INFO     | . stage-in = 0 s
[2026-01-16 06:48:47] 2026-01-16 06:48:00,836 | INFO     | . payload execution = 5411 s
[2026-01-16 06:48:47] 2026-01-16 06:48:00,840 | INFO     | . stage-out = 1 s
[2026-01-16 06:48:47] 2026-01-16 06:48:00,840 | INFO     | . log creation = 0 s
[2026-01-16 06:48:47] 2026-01-16 06:48:00,840 | INFO     | ..............................
[2026-01-16 06:48:47] 2026-01-16 06:48:01,065 | INFO     | 
[2026-01-16 06:48:47] 2026-01-16 06:48:01,065 | INFO     | job summary report
[2026-01-16 06:48:47] 2026-01-16 06:48:01,065 | INFO     | --------------------------------------------------
[2026-01-16 06:48:47] 2026-01-16 06:48:01,065 | INFO     | PanDA job id: 6969524378
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | task id: 48215263
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | errors: (none)
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | pilot state: finished 
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | transexitcode: 0
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | exeerrorcode: 0
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | exeerrordiag: 
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | exitcode: 0
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | exitmsg: OK
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | cpuconsumptiontime: 30363 s
[2026-01-16 06:48:47] 2026-01-16 06:48:01,066 | INFO     | nevents: 400
[2026-01-16 06:48:47] 2026-01-16 06:48:01,067 | INFO     | neventsw: 0
[2026-01-16 06:48:47] 2026-01-16 06:48:01,067 | INFO     | pid: 2290166
[2026-01-16 06:48:47] 2026-01-16 06:48:01,067 | INFO     | pgrp: 2290166
[2026-01-16 06:48:47] 2026-01-16 06:48:01,067 | INFO     | corecount: 12
[2026-01-16 06:48:47] 2026-01-16 06:48:01,067 | INFO     | event service: False
[2026-01-16 06:48:47] 2026-01-16 06:48:01,067 | INFO     | sizes: {0: 2283801, 1: 2284000, 12: 2284000, 16: 2284290, 23: 2284318, 5432: 2311060, 5435: 2320104, 5437: 2320188, 5453: 2320382}
[2026-01-16 06:48:47] 2026-01-16 06:48:01,067 | INFO     | --------------------------------------------------
[2026-01-16 06:48:47] 2026-01-16 06:48:01,067 | INFO     | 
[2026-01-16 06:48:47] 2026-01-16 06:48:01,067 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 06:48:47] 2026-01-16 06:48:01,127 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,132 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,133 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | job 6969524378 has completed (purged errors)
[2026-01-16 06:48:47] 2026-01-16 06:48:01,134 | INFO     | overall cleanup function is called
[2026-01-16 06:48:47] 2026-01-16 06:48:02,155 | INFO     | --- collectZombieJob: --- 10, [2290166]
[2026-01-16 06:48:47] 2026-01-16 06:48:02,155 | INFO     | zombie collector waiting for pid 2290166
[2026-01-16 06:48:47] 2026-01-16 06:48:02,158 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 06:48:47] 2026-01-16 06:48:02,158 | INFO     | collected zombie processes
[2026-01-16 06:48:47] 2026-01-16 06:48:02,158 | INFO     | will attempt to kill all subprocesses of pid=2290166
[2026-01-16 06:48:47] 2026-01-16 06:48:02,561 | INFO     | PID=2280539 has CPU usage=15.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-16 06:48:47] 2026-01-16 06:48:02,561 | INFO     | .. there are 22 such processes running
[2026-01-16 06:48:47] 2026-01-16 06:48:03,531 | INFO     | process IDs to be killed: [2290166] (in reverse order)
[2026-01-16 06:48:47] 2026-01-16 06:48:04,099 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 06:48:47] 2026-01-16 06:48:04,102 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 06:48:47] 2026-01-16 06:48:04,140 | INFO     | did not find any defunct processes belonging to 2290166
[2026-01-16 06:48:47] 2026-01-16 06:48:04,180 | INFO     | did not find any defunct processes belonging to 2290166
[2026-01-16 06:48:47] 2026-01-16 06:48:04,181 | INFO     | ready for new job
[2026-01-16 06:48:47] 2026-01-16 06:48:04,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 06:48:47] 2026-01-16 06:48:04,185 | INFO     | ***************************************
[2026-01-16 06:48:47] 2026-01-16 06:48:04,186 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 06:48:47] 2026-01-16 06:48:04,186 | INFO     | ***************************************
[2026-01-16 06:48:47] 2026-01-16 06:48:04,186 | INFO     | 
[2026-01-16 06:48:47] 2026-01-16 06:48:04,205 | INFO     | architecture information:
[2026-01-16 06:48:47] 2026-01-16 06:48:04,208 | INFO     | executing command: cat /etc/os-release
[2026-01-16 06:48:47] 2026-01-16 06:48:04,250 | INFO     | cat /etc/os-release:
[2026-01-16 06:48:47] NAME="CentOS Linux"
[2026-01-16 06:48:47] VERSION="7 (Core)"
[2026-01-16 06:48:47] ID="centos"
[2026-01-16 06:48:47] ID_LIKE="rhel fedora"
[2026-01-16 06:48:47] VERSION_ID="7"
[2026-01-16 06:48:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 06:48:47] ANSI_COLOR="0;31"
[2026-01-16 06:48:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 06:48:47] HOME_URL="https://www.centos.org/"
[2026-01-16 06:48:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 06:48:47] 
[2026-01-16 06:48:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 06:48:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 06:48:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 06:48:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 06:48:47] 
[2026-01-16 06:48:47] 2026-01-16 06:48:04,251 | INFO     | ***************************************
[2026-01-16 06:48:47] 2026-01-16 06:48:04,754 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 06:48:47] 2026-01-16 06:48:04,793 | INFO     | sufficient remaining disk space (251836497920 B)
[2026-01-16 06:48:47] 2026-01-16 06:48:04,793 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 06:48:47] 2026-01-16 06:48:04,794 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 06:48:47] 2026-01-16 06:48:04,794 | INFO     | update_server=False
[2026-01-16 06:48:47] 2026-01-16 06:48:04,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 06:48:47] 2026-01-16 06:48:05,386 | INFO     | all job control threads have been joined
[2026-01-16 06:48:47] 2026-01-16 06:48:05,473 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 06:48:47] 2026-01-16 06:48:05,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 06:48:47] 2026-01-16 06:48:05,579 | INFO     | aborting loop
[2026-01-16 06:48:47] 2026-01-16 06:48:05,771 | INFO     | all data control threads have been joined
[2026-01-16 06:48:47] 2026-01-16 06:48:05,801 | INFO     | [job] retrieve thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:06,073 | INFO     | all payload control threads have been joined
[2026-01-16 06:48:47] 2026-01-16 06:48:06,080 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 06:48:47] 2026-01-16 06:48:06,115 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 06:48:47] 2026-01-16 06:48:06,185 | INFO     | [data] copytool_in thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:06,186 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:06,227 | INFO     | [payload] failed_post thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:06,391 | INFO     | [job] control thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:06,443 | INFO     | [job] validate thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:06,584 | INFO     | [job] job monitor thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:06,776 | INFO     | [data] control thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:06,843 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:07,031 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:07,078 | INFO     | [payload] control thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:07,085 | INFO     | [job] queue monitor thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:07,223 | INFO     | [payload] validate_post thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:08,120 | INFO     | [data] copytool_out thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:09,478 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:15,842 | INFO     | job.realtimelogging is not enabled
[2026-01-16 06:48:47] 2026-01-16 06:48:16,847 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 06:48:47] 2026-01-16 06:48:36,088 | INFO     | PID=2280539 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 06:48:47] 2026-01-16 06:48:36,088 | INFO     | .. there are 22 such processes running
[2026-01-16 06:48:47] 2026-01-16 06:48:36,088 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 06:48:47] 2026-01-16 06:48:36,088 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 06:48:47] 2026-01-16 06:48:36,088 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 06:48:47] 2026-01-16 06:48:39,203 | INFO     | [monitor] cgroup control has ended
[2026-01-16 06:48:47] 2026-01-16 06:48:41,079 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127492685719360)>', '<ExcThread(monitor, started 127492010538752)>']
[2026-01-16 06:48:47] 2026-01-16 06:48:41,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 06:48:47] 2026-01-16 06:48:41,118 | INFO     | [monitor] control thread has ended
[2026-01-16 06:48:47] 2026-01-16 06:48:46,105 | INFO     | all workflow threads have been joined
[2026-01-16 06:48:47] 2026-01-16 06:48:46,105 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 06:48:47] 2026-01-16 06:48:46,108 | INFO     | traces error code: 0
[2026-01-16 06:48:47] 2026-01-16 06:48:46,108 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 06:48:47] 2026-01-16 06:48:46,470 [wrapper] ==== pilot stdout END ====
[2026-01-16 06:48:47] 2026-01-16 06:48:46,478 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 06:48:47] 2026-01-16 06:48:46,487 [wrapper] pilotpid: 2280539
[2026-01-16 06:48:47] 2026-01-16 06:48:46,500 [wrapper] Pilot exit status: 0
[2026-01-16 06:48:47] 2026-01-16 06:48:46,549 [wrapper] pandaids: 6969524378
[2026-01-16 06:48:47] 2026-01-16 06:48:46,718 [wrapper] cleanup supervisor_pilot 2781728 2280540
[2026-01-16 06:48:47] 2026-01-16 06:48:46,728 [wrapper] Test setup, not cleaning
[2026-01-16 06:48:47] 2026-01-16 06:48:46,738 [wrapper] apfmon messages muted
[2026-01-16 06:48:47] 2026-01-16 06:48:46,746 [wrapper] ==== wrapper stdout END ====
[2026-01-16 06:48:47] 2026-01-16 06:48:46,757 [wrapper] ==== wrapper stderr END ====
[2026-01-16 06:48:47]  *** Error codes and diagnostics ***
[2026-01-16 06:48:47]     "exeErrorCode": 0,
[2026-01-16 06:48:47]     "exeErrorDiag": "",
[2026-01-16 06:48:47]     "pilotErrorCode": 0,
[2026-01-16 06:48:47]     "pilotErrorDiag": "",
[2026-01-16 06:48:47]  *** Listing of results directory ***
[2026-01-16 06:48:47] total 741532
[2026-01-16 06:48:47] -rw-r--r-- 1 boinc boinc    579449 Jan 14 16:41 pilot3.tar.gz
[2026-01-16 06:48:47] -rwx------ 1 boinc boinc     36322 Jan 14 16:43 runpilot2-wrapper.sh
[2026-01-16 06:48:47] -rw-r--r-- 1 boinc boinc      5112 Jan 14 16:44 queuedata.json
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc       100 Jan 16 05:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 06:48:47] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 05:15 run_atlas
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc       105 Jan 16 05:15 job.xml
[2026-01-16 06:48:47] -rw-r--r-- 2 boinc boinc 598272329 Jan 16 05:15 EVNT.32794306._001139.pool.root.1
[2026-01-16 06:48:47] -rw-r--r-- 2 boinc boinc     15847 Jan 16 05:15 start_atlas.sh
[2026-01-16 06:48:47] drwxrwx--x 2 boinc boinc      4096 Jan 16 05:15 shared
[2026-01-16 06:48:47] -rw-r--r-- 2 boinc boinc    592404 Jan 16 05:15 input.tar.gz
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 05:15 init_data.xml
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc         0 Jan 16 05:15 boinc_setup_complete
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc         0 Jan 16 05:15 boinc_lockfile
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc      2507 Jan 16 05:15 pandaJob.out
[2026-01-16 06:48:47] -rw------- 1 boinc boinc   1004075 Jan 16 05:16 agis_schedconf.cvmfs.json
[2026-01-16 06:48:47] -rw------- 1 boinc boinc   1516246 Jan 16 05:16 agis_ddmendpoints.agis.ALL.json
[2026-01-16 06:48:47] drwx------ 5 boinc boinc      4096 Jan 16 05:16 pilot3
[2026-01-16 06:48:47] -rw------- 1 boinc boinc 154828298 Jan 16 06:46 HITS.48215263._028445.pool.root.1
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc       530 Jan 16 06:46 boinc_task_state.xml
[2026-01-16 06:48:47] -rw------- 1 boinc boinc      1023 Jan 16 06:47 memory_monitor_summary.json
[2026-01-16 06:48:47] -rw------- 1 boinc boinc        95 Jan 16 06:47 pilot_heartbeat.json
[2026-01-16 06:48:47] -rw------- 1 boinc boinc    383363 Jan 16 06:47 log.48215263._028445.job.log.tgz.1
[2026-01-16 06:48:47] -rw------- 1 boinc boinc      7732 Jan 16 06:48 heartbeat.json
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 06:48 boinc_mmap_file
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc        27 Jan 16 06:48 wrapper_checkpoint.txt
[2026-01-16 06:48:47] -rw------- 1 boinc boinc      4920 Jan 16 06:48 pilotlog.txt
[2026-01-16 06:48:47] -rw------- 1 boinc boinc    766698 Jan 16 06:48 log.48215263._028445.job.log.1
[2026-01-16 06:48:47] -rw------- 1 boinc boinc       357 Jan 16 06:48 output.list
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc       620 Jan 16 06:48 runtime_log
[2026-01-16 06:48:47] -rw------- 1 boinc boinc   1167360 Jan 16 06:48 result.tar.gz
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 06:48 runtime_log.err
[2026-01-16 06:48:47] -rw------- 1 boinc boinc       652 Jan 16 06:48 3yiMDmJ9I08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXhlKDmQUaXAn.diag
[2026-01-16 06:48:47] -rw-rw-r-- 1 boinc boinc     22185 Jan 16 06:48 stderr.txt
[2026-01-16 06:48:47] HITS file was successfully produced:
[2026-01-16 06:48:47] -rw------- 1 boinc boinc 154828298 Jan 16 06:46 shared/HITS.pool.root.1
[2026-01-16 06:48:47]  *** Contents of shared directory: ***
[2026-01-16 06:48:47] total 737196
[2026-01-16 06:48:47] -rw-r--r-- 2 boinc boinc 598272329 Jan 16 05:15 ATLAS.root_0
[2026-01-16 06:48:47] -rw-r--r-- 2 boinc boinc     15847 Jan 16 05:15 start_atlas.sh
[2026-01-16 06:48:47] -rw-r--r-- 2 boinc boinc    592404 Jan 16 05:15 input.tar.gz
[2026-01-16 06:48:47] -rw------- 1 boinc boinc 154828298 Jan 16 06:46 HITS.pool.root.1
[2026-01-16 06:48:47] -rw------- 1 boinc boinc   1167360 Jan 16 06:48 result.tar.gz
06:48:49 (2276275): run_atlas exited; CPU time 30673.549432
06:48:49 (2276275): called boinc_finish(0)

</stderr_txt>
]]>

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