Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:20:20 (2569170): wrapper (7.7.26015): starting
09:20:20 (2569170): wrapper: running run_atlas (--nthreads 3)
[2026-01-15 09:20:20] Arguments: --nthreads 3
[2026-01-15 09:20:20] Threads: 3
[2026-01-15 09:20:20] Checking for CVMFS
[2026-01-15 09:20:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 09:20:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 09:20:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 09:20:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 09:20:21] 2.9.2.0 1812368 2106 67560 155161 1 56 20671142 36864001 0 130560 0 2047583 99.991 84161 17338 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 09:20:21] CVMFS is ok
[2026-01-15 09:20:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 09:20:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 09:20:21] Further information can be found at the LHC@home message board.
[2026-01-15 09:20:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 09:20:21] Checking for apptainer binary...
[2026-01-15 09:20:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 09:20:21] Running /usr/bin/apptainer --version
[2026-01-15 09:20:21] apptainer version 1.4.2-2.1
[2026-01-15 09:20:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 09:20:21] cosA133a
[2026-01-15 09:20:21] apptainer works
[2026-01-15 09:20:21] Set ATHENA_PROC_NUMBER=3
[2026-01-15 09:20:21] Set ATHENA_CORE_NUMBER=3
[2026-01-15 09:20:21] Starting ATLAS job with PandaID=6969843942
[2026-01-15 09:20:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 10:20:39]  *** The last 200 lines of the pilot log: ***
[2026-01-15 10:20:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-15 10:20:39]  replicas=None
[2026-01-15 10:20:39]  scope=mc23_13p6TeV
[2026-01-15 10:20:39]  status=None
[2026-01-15 10:20:39]  status_code=0
[2026-01-15 10:20:39]  storage_token=
[2026-01-15 10:20:39]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6969843942/log.48215263._037916.job.log.tgz.1
[2026-01-15 10:20:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/6a/log.48215263._037916.job.log.tgz.1
[2026-01-15 10:20:39]  workdir=None
[2026-01-15 10:20:39] ]
[2026-01-15 10:20:39] 2026-01-15 09:19:46,680 | INFO     | transferring file log.48215263._037916.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6969843942/log.48215263._037916.job.log.tgz.1 to /local/data/boinc/
[2026-01-15 10:20:39] 2026-01-15 09:19:46,680 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6969843942/log.48215263._037916.job.log.tgz.1 /local/data/boinc/slots/0/log.48215263._0379
[2026-01-15 10:20:39] 2026-01-15 09:19:46,693 | INFO     | adding to output.list: log.48215263._037916.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/6a/log.48215263._037916.job.log.tg
[2026-01-15 10:20:39] 2026-01-15 09:19:46,693 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 10:20:39] 2026-01-15 09:19:46,693 | INFO     | summary of transferred files:
[2026-01-15 10:20:39] 2026-01-15 09:19:46,693 | INFO     |  -- lfn=log.48215263._037916.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 10:20:39] 2026-01-15 09:19:46,693 | INFO     | stage-out finished correctly
[2026-01-15 10:20:39] 2026-01-15 09:19:47,567 | INFO     | PID=2572897 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 10:20:39] 2026-01-15 09:19:48,146 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 10:20:39] 2026-01-15 09:19:48,177 | INFO     | job 6969843942 has state=finished
[2026-01-15 10:20:39] 2026-01-15 09:19:48,177 | INFO     | preparing for final server update for job 6969843942 in state='finished'
[2026-01-15 10:20:39] 2026-01-15 09:19:48,177 | INFO     | this job has now completed (state=finished)
[2026-01-15 10:20:39] 2026-01-15 09:19:48,177 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 10:20:39] 2026-01-15 09:19:48,177 | INFO     | log transfer has been attempted: DONE
[2026-01-15 10:20:39] 2026-01-15 09:19:48,177 | INFO     | job 6969843942 has finished - writing final server update
[2026-01-15 10:20:39] 2026-01-15 09:19:48,177 | INFO     | total number of processed events: 400 (read)
[2026-01-15 10:20:39] 2026-01-15 09:19:48,178 | INFO     | executing command: lscpu
[2026-01-15 10:20:39] 2026-01-15 09:19:48,191 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 10:20:39] 2026-01-15 09:19:48,567 | INFO     | time since job start (3559s) is within the limit (349056.0s)
[2026-01-15 10:20:39] 2026-01-15 09:19:48,738 | INFO     | monitor loop #277: job 0:6969843942 is in state 'finished'
[2026-01-15 10:20:39] 2026-01-15 09:19:48,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 10:20:39] 2026-01-15 09:19:50,573 | INFO     | time since job start (3561s) is within the limit (349056.0s)
[2026-01-15 10:20:39] 2026-01-15 09:19:51,242 | INFO     | monitor loop #278: job 0:6969843942 is in state 'finished'
[2026-01-15 10:20:39] 2026-01-15 09:19:51,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 10:20:39] 2026-01-15 09:19:52,581 | INFO     | time since job start (3563s) is within the limit (349056.0s)
[2026-01-15 10:20:39] 2026-01-15 09:19:53,745 | INFO     | monitor loop #279: job 0:6969843942 is in state 'finished'
[2026-01-15 10:20:39] 2026-01-15 09:19:53,745 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 10:20:39] 2026-01-15 09:19:54,586 | INFO     | time since job start (3565s) is within the limit (349056.0s)
[2026-01-15 10:20:39] 2026-01-15 09:19:55,068 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 10:20:39] 2026-01-15 09:19:55,069 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4379.1464166666665
[2026-01-15 10:20:39] 2026-01-15 09:19:55,070 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6969843942/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 10:20:39] 2026-01-15 09:19:55,070 | INFO     | extracted standard info from prmon json
[2026-01-15 10:20:39] 2026-01-15 09:19:55,070 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 10:20:39] 2026-01-15 09:19:55,070 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 10:20:39] 2026-01-15 09:19:55,070 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 10:20:39] 2026-01-15 09:19:55,070 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | fitting pss+swap vs Time
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | sum of square deviations: 41117050.0
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | sum of deviations: -1132319210.0
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | mean x: 1768467084.0
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | mean y: 2664200.0784313725
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | intersect: 48704340304.41675
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | chi2: 0.038535952511464966
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | current memory leak: -27.54 B/s (using 51 data points, chi2=0.04)
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | could have reported an average CPU frequency of 4286 MHz (5 samples)
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | ..............................
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | . Timing measurements:
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | . get job = 0 s
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | . initial setup = 1 s
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | . payload setup = 5 s
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | . stage-in = 0 s
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | . payload execution = 3532 s
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | . stage-out = 0 s
[2026-01-15 10:20:39] 2026-01-15 09:19:55,071 | INFO     | . log creation = 0 s
[2026-01-15 10:20:39] 2026-01-15 09:19:55,072 | INFO     | ..............................
[2026-01-15 10:20:39] 2026-01-15 09:19:55,101 | INFO     | 
[2026-01-15 10:20:39] 2026-01-15 09:19:55,101 | INFO     | job summary report
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | --------------------------------------------------
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | PanDA job id: 6969843942
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | task id: 48215263
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | errors: (none)
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | pilot state: finished 
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | transexitcode: 0
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | exeerrorcode: 0
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | exeerrordiag: 
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | exitcode: 0
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | exitmsg: OK
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | cpuconsumptiontime: 9915 s
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | nevents: 400
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | neventsw: 0
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | pid: 2579347
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | pgrp: 2579347
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | corecount: 3
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | event service: False
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | sizes: {0: 2283955, 5: 2284217, 10: 2284273, 3542: 2319006, 3544: 2319006, 3551: 2319232}
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | --------------------------------------------------
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | 
[2026-01-15 10:20:39] 2026-01-15 09:19:55,102 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 10:20:39] 2026-01-15 09:19:55,115 | INFO     | job 6969843942 has completed (purged errors)
[2026-01-15 10:20:39] 2026-01-15 09:19:55,116 | INFO     | overall cleanup function is called
[2026-01-15 10:20:39] 2026-01-15 09:19:56,122 | INFO     | --- collectZombieJob: --- 10, [2579347]
[2026-01-15 10:20:39] 2026-01-15 09:19:56,122 | INFO     | zombie collector waiting for pid 2579347
[2026-01-15 10:20:39] 2026-01-15 09:19:56,122 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 10:20:39] 2026-01-15 09:19:56,123 | INFO     | collected zombie processes
[2026-01-15 10:20:39] 2026-01-15 09:19:56,123 | INFO     | will attempt to kill all subprocesses of pid=2579347
[2026-01-15 10:20:39] 2026-01-15 09:19:56,162 | INFO     | process IDs to be killed: [2579347] (in reverse order)
[2026-01-15 10:20:39] 2026-01-15 09:19:56,187 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 10:20:39] 2026-01-15 09:19:56,187 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 10:20:39] 2026-01-15 09:19:56,189 | INFO     | did not find any defunct processes belonging to 2579347
[2026-01-15 10:20:39] 2026-01-15 09:19:56,189 | INFO     | did not find any defunct processes belonging to 2579347
[2026-01-15 10:20:39] 2026-01-15 09:19:56,190 | INFO     | ready for new job
[2026-01-15 10:20:39] 2026-01-15 09:19:56,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 10:20:39] 2026-01-15 09:19:56,190 | INFO     | ***************************************
[2026-01-15 10:20:39] 2026-01-15 09:19:56,190 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 10:20:39] 2026-01-15 09:19:56,190 | INFO     | ***************************************
[2026-01-15 10:20:39] 2026-01-15 09:19:56,190 | INFO     | 
[2026-01-15 10:20:39] 2026-01-15 09:19:56,191 | INFO     | architecture information:
[2026-01-15 10:20:39] 2026-01-15 09:19:56,191 | INFO     | executing command: cat /etc/os-release
[2026-01-15 10:20:39] 2026-01-15 09:19:56,201 | INFO     | cat /etc/os-release:
[2026-01-15 10:20:39] NAME="CentOS Linux"
[2026-01-15 10:20:39] VERSION="7 (Core)"
[2026-01-15 10:20:39] ID="centos"
[2026-01-15 10:20:39] ID_LIKE="rhel fedora"
[2026-01-15 10:20:39] VERSION_ID="7"
[2026-01-15 10:20:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 10:20:39] ANSI_COLOR="0;31"
[2026-01-15 10:20:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 10:20:39] HOME_URL="https://www.centos.org/"
[2026-01-15 10:20:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 10:20:39] 
[2026-01-15 10:20:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 10:20:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 10:20:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 10:20:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 10:20:39] 
[2026-01-15 10:20:39] 2026-01-15 09:19:56,201 | INFO     | ***************************************
[2026-01-15 10:20:39] 2026-01-15 09:19:56,703 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 10:20:39] 2026-01-15 09:19:56,716 | INFO     | sufficient remaining disk space (336837214208 B)
[2026-01-15 10:20:39] 2026-01-15 09:19:56,716 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 10:20:39] 2026-01-15 09:19:56,716 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 10:20:39] 2026-01-15 09:19:56,716 | INFO     | update_server=False
[2026-01-15 10:20:39] 2026-01-15 09:19:56,716 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 10:20:39] 2026-01-15 09:19:56,716 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 10:20:39] 2026-01-15 09:19:56,886 | INFO     | all payload control threads have been joined
[2026-01-15 10:20:39] 2026-01-15 09:19:57,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 10:20:39] 2026-01-15 09:19:57,254 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 10:20:39] 2026-01-15 09:19:57,254 | INFO     | aborting loop
[2026-01-15 10:20:39] 2026-01-15 09:19:57,296 | INFO     | all job control threads have been joined
[2026-01-15 10:20:39] 2026-01-15 09:19:57,718 | INFO     | [job] queue monitor thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:57,719 | INFO     | [job] retrieve thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:57,733 | INFO     | all data control threads have been joined
[2026-01-15 10:20:39] 2026-01-15 09:19:57,892 | INFO     | [payload] control thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:57,916 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:57,981 | INFO     | [payload] failed_post thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:58,194 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:58,260 | INFO     | [job] job monitor thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:58,302 | INFO     | [job] control thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:58,398 | INFO     | [job] validate thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:58,466 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:58,611 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:58,645 | INFO     | [payload] validate_post thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:58,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 10:20:39] 2026-01-15 09:19:58,739 | INFO     | [data] control thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:58,958 | INFO     | [data] copytool_in thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:19:59,247 | INFO     | [data] copytool_out thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:20:02,694 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 10:20:39] 2026-01-15 09:20:27,488 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-01-15 10:20:39] 2026-01-15 09:20:27,700 | INFO     | PID=2572897 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 10:20:39] 2026-01-15 09:20:27,700 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 10:20:39] 2026-01-15 09:20:27,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 10:20:39] 2026-01-15 09:20:27,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 10:20:39] 2026-01-15 09:20:33,550 | INFO     | [monitor] cgroup control has ended
[2026-01-15 10:20:39] 2026-01-15 09:20:34,779 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140165584525120)>', '<ExcThread(monitor, started 140165083281152)>']
[2026-01-15 10:20:39] 2026-01-15 09:20:35,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 10:20:39] 2026-01-15 09:20:35,742 | INFO     | [monitor] control thread has ended
[2026-01-15 10:20:39] 2026-01-15 09:20:39,805 | INFO     | all workflow threads have been joined
[2026-01-15 10:20:39] 2026-01-15 09:20:39,805 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 10:20:39] 2026-01-15 09:20:39,806 | INFO     | traces error code: 0
[2026-01-15 10:20:39] 2026-01-15 09:20:39,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 10:20:39] 2026-01-15 09:20:39,853 [wrapper] ==== pilot stdout END ====
[2026-01-15 10:20:39] 2026-01-15 09:20:39,856 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 10:20:39] 2026-01-15 09:20:39,859 [wrapper] pilotpid: 2572897
[2026-01-15 10:20:39] 2026-01-15 09:20:39,861 [wrapper] Pilot exit status: 0
[2026-01-15 10:20:39] 2026-01-15 09:20:39,869 [wrapper] pandaids: 6969843942
[2026-01-15 10:20:39] 2026-01-15 09:20:39,886 [wrapper] cleanup supervisor_pilot 2591149 2572898
[2026-01-15 10:20:39] 2026-01-15 09:20:39,888 [wrapper] Test setup, not cleaning
[2026-01-15 10:20:39] 2026-01-15 09:20:39,891 [wrapper] apfmon messages muted
[2026-01-15 10:20:39] 2026-01-15 09:20:39,894 [wrapper] ==== wrapper stdout END ====
[2026-01-15 10:20:39] 2026-01-15 09:20:39,896 [wrapper] ==== wrapper stderr END ====
[2026-01-15 10:20:39]  *** Error codes and diagnostics ***
[2026-01-15 10:20:39]     "exeErrorCode": 0,
[2026-01-15 10:20:39]     "exeErrorDiag": "",
[2026-01-15 10:20:39]     "pilotErrorCode": 0,
[2026-01-15 10:20:39]     "pilotErrorDiag": "",
[2026-01-15 10:20:39]  *** Listing of results directory ***
[2026-01-15 10:20:39] total 737104
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc      5112 Jan 15 00:30 queuedata.json
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc    579449 Jan 15 00:30 pilot3.tar.gz
[2026-01-15 10:20:39] -rwx------ 1 boinc boinc     36322 Jan 15 00:31 runpilot2-wrapper.sh
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc       100 Jan 15 09:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 10:20:39] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 09:20 run_atlas
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc       105 Jan 15 09:20 job.xml
[2026-01-15 10:20:39] -rw-r--r-- 2 boinc boinc 599608127 Jan 15 09:20 EVNT.32794306._001513.pool.root.1
[2026-01-15 10:20:39] -rw-r--r-- 2 boinc boinc    592401 Jan 15 09:20 input.tar.gz
[2026-01-15 10:20:39] -rw-r--r-- 2 boinc boinc     15847 Jan 15 09:20 start_atlas.sh
[2026-01-15 10:20:39] drwxrwx--x 2 boinc boinc      4096 Jan 15 09:20 shared
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc         0 Jan 15 09:20 boinc_setup_complete
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc      6274 Jan 15 09:20 init_data.xml
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc         0 Jan 15 09:20 boinc_lockfile
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc      2509 Jan 15 09:20 pandaJob.out
[2026-01-15 10:20:39] -rw------- 1 boinc boinc    999472 Jan 15 09:20 agis_schedconf.cvmfs.json
[2026-01-15 10:20:39] -rw------- 1 boinc boinc   1516246 Jan 15 09:20 agis_ddmendpoints.agis.ALL.json
[2026-01-15 10:20:39] drwx------ 5 boinc boinc      4096 Jan 15 09:20 pilot3
[2026-01-15 10:20:39] -rw------- 1 boinc boinc 149711646 Jan 15 10:19 HITS.48215263._037916.pool.root.1
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc       529 Jan 15 10:19 boinc_task_state.xml
[2026-01-15 10:20:39] -rw------- 1 boinc boinc      1009 Jan 15 10:19 memory_monitor_summary.json
[2026-01-15 10:20:39] -rw------- 1 boinc boinc        95 Jan 15 10:19 pilot_heartbeat.json
[2026-01-15 10:20:39] -rw------- 1 boinc boinc    236253 Jan 15 10:19 log.48215263._037916.job.log.tgz.1
[2026-01-15 10:20:39] -rw------- 1 boinc boinc      7746 Jan 15 10:19 heartbeat.json
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc        26 Jan 15 10:20 wrapper_checkpoint.txt
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc      8192 Jan 15 10:20 boinc_mmap_file
[2026-01-15 10:20:39] -rw------- 1 boinc boinc      4752 Jan 15 10:20 pilotlog.txt
[2026-01-15 10:20:39] -rw------- 1 boinc boinc    538328 Jan 15 10:20 log.48215263._037916.job.log.1
[2026-01-15 10:20:39] -rw------- 1 boinc boinc       357 Jan 15 10:20 output.list
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc       620 Jan 15 10:20 runtime_log
[2026-01-15 10:20:39] -rw------- 1 boinc boinc    798720 Jan 15 10:20 result.tar.gz
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc      8907 Jan 15 10:20 runtime_log.err
[2026-01-15 10:20:39] -rw------- 1 boinc boinc       659 Jan 15 10:20 PzGNDmWVP08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQ7sKDmxK3y6n.diag
[2026-01-15 10:20:39] -rw-r--r-- 1 boinc boinc     22008 Jan 15 10:20 stderr.txt
[2026-01-15 10:20:39] HITS file was successfully produced:
[2026-01-15 10:20:39] -rw------- 1 boinc boinc 149711646 Jan 15 10:19 shared/HITS.pool.root.1
[2026-01-15 10:20:39]  *** Contents of shared directory: ***
[2026-01-15 10:20:39] total 733140
[2026-01-15 10:20:39] -rw-r--r-- 2 boinc boinc 599608127 Jan 15 09:20 ATLAS.root_0
[2026-01-15 10:20:39] -rw-r--r-- 2 boinc boinc    592401 Jan 15 09:20 input.tar.gz
[2026-01-15 10:20:39] -rw-r--r-- 2 boinc boinc     15847 Jan 15 09:20 start_atlas.sh
[2026-01-15 10:20:39] -rw------- 1 boinc boinc 149711646 Jan 15 10:19 HITS.pool.root.1
[2026-01-15 10:20:39] -rw------- 1 boinc boinc    798720 Jan 15 10:20 result.tar.gz
10:20:41 (2569170): run_atlas exited; CPU time 9932.665075
10:20:41 (2569170): called boinc_finish(0)

</stderr_txt>
]]>

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