Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
11:28:52 (47583): wrapper (7.7.26015): starting
11:28:52 (47583): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 11:28:52] Arguments: --nthreads 12
[2026-01-16 11:28:52] Threads: 12
[2026-01-16 11:28:52] Checking for CVMFS
[2026-01-16 11:28:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 11:28:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 11:28:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 11:28:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 11:28:53] 2.13.3.0 40677 10416 76688 155206 2 236 4021357 4096000 19309 130560 0 83904586 99.981 1152076 230 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 11:28:53] CVMFS is ok
[2026-01-16 11:28:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 11:28:53] Checking for apptainer binary...
[2026-01-16 11:28:53] apptainer is not installed, using version from CVMFS
[2026-01-16 11:28:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 11:28:55] epyc7v12
[2026-01-16 11:28:55] apptainer works
[2026-01-16 11:28:55] Set ATHENA_PROC_NUMBER=12
[2026-01-16 11:28:55] Set ATHENA_CORE_NUMBER=12
[2026-01-16 11:28:55] Starting ATLAS job with PandaID=6969819985
[2026-01-16 11:28:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31427/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 13:03:41]  *** The last 200 lines of the pilot log: ***
[2026-01-16 13:03:41] 2026-01-16 13:02:31,147 | INFO     |  -- lfn=log.48215263._037634.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 13:03:41] 2026-01-16 13:02:31,147 | INFO     | stage-out finished correctly
[2026-01-16 13:03:41] 2026-01-16 13:02:31,168 | INFO     | time since job start (5585s) is within the limit (349056.0s)
[2026-01-16 13:03:41] 2026-01-16 13:02:32,495 | WARNING  | process 59093 can no longer be monitored (due to stat problems) - aborting
[2026-01-16 13:03:41] 2026-01-16 13:02:32,495 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/1/PanDA_Pilot-6969819985/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 13:03:41] 2026-01-16 13:02:33,180 | INFO     | time since job start (5587s) is within the limit (349056.0s)
[2026-01-16 13:03:41] 2026-01-16 13:02:33,747 | INFO     | number of running child processes to parent process 59093: 1
[2026-01-16 13:03:41] 2026-01-16 13:02:33,747 | INFO     | maximum number of monitored processes: 6
[2026-01-16 13:03:41] 2026-01-16 13:02:34,038 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 13:03:41] 2026-01-16 13:02:34,643 | INFO     | job 6969819985 has state=finished
[2026-01-16 13:03:41] 2026-01-16 13:02:34,643 | INFO     | preparing for final server update for job 6969819985 in state='finished'
[2026-01-16 13:03:41] 2026-01-16 13:02:34,644 | INFO     | this job has now completed (state=finished)
[2026-01-16 13:03:41] 2026-01-16 13:02:34,644 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 13:03:41] 2026-01-16 13:02:34,644 | INFO     | log transfer has been attempted: DONE
[2026-01-16 13:03:41] 2026-01-16 13:02:34,644 | INFO     | job 6969819985 has finished - writing final server update
[2026-01-16 13:03:41] 2026-01-16 13:02:34,645 | INFO     | total number of processed events: 400 (read)
[2026-01-16 13:03:41] 2026-01-16 13:02:34,645 | INFO     | executing command: lscpu
[2026-01-16 13:03:41] 2026-01-16 13:02:34,914 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 13:03:41] 2026-01-16 13:02:35,194 | INFO     | time since job start (5589s) is within the limit (349056.0s)
[2026-01-16 13:03:41] 2026-01-16 13:02:36,254 | INFO     | monitor loop #366: job 0:6969819985 is in state 'finished'
[2026-01-16 13:03:41] 2026-01-16 13:02:36,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:03:41] 2026-01-16 13:02:37,199 | INFO     | time since job start (5591s) is within the limit (349056.0s)
[2026-01-16 13:03:41] 2026-01-16 13:02:38,760 | INFO     | monitor loop #367: job 0:6969819985 is in state 'finished'
[2026-01-16 13:03:41] 2026-01-16 13:02:38,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:03:41] 2026-01-16 13:02:39,204 | INFO     | time since job start (5593s) is within the limit (349056.0s)
[2026-01-16 13:03:41] 2026-01-16 13:02:41,211 | INFO     | time since job start (5595s) is within the limit (349056.0s)
[2026-01-16 13:03:41] 2026-01-16 13:02:41,263 | INFO     | monitor loop #368: job 0:6969819985 is in state 'finished'
[2026-01-16 13:03:41] 2026-01-16 13:02:41,263 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:03:41] 2026-01-16 13:02:43,217 | INFO     | time since job start (5597s) is within the limit (349056.0s)
[2026-01-16 13:03:41] 2026-01-16 13:02:43,766 | INFO     | monitor loop #369: job 0:6969819985 is in state 'finished'
[2026-01-16 13:03:41] 2026-01-16 13:02:43,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:03:41] 2026-01-16 13:02:45,222 | INFO     | time since job start (5599s) is within the limit (349056.0s)
[2026-01-16 13:03:41] 2026-01-16 13:02:46,269 | INFO     | monitor loop #370: job 0:6969819985 is in state 'finished'
[2026-01-16 13:03:41] 2026-01-16 13:02:46,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 13:03:41] 2026-01-16 13:02:47,492 | INFO     | PID=51786 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 13:03:41] 2026-01-16 13:02:47,493 | INFO     | .. there are 22 such processes running
[2026-01-16 13:03:41] 2026-01-16 13:02:48,317 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 13:03:41] 2026-01-16 13:02:48,369 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2411.5382656249994
[2026-01-16 13:03:41] 2026-01-16 13:02:48,456 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/1/PanDA_Pilot-6969819985/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 13:03:41] 2026-01-16 13:02:48,457 | INFO     | extracted standard info from prmon json
[2026-01-16 13:03:41] 2026-01-16 13:02:48,457 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 13:03:41] 2026-01-16 13:02:48,457 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 13:03:41] 2026-01-16 13:02:48,457 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 13:03:41] 2026-01-16 13:02:48,457 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 13:03:41] 2026-01-16 13:02:48,469 | INFO     | fitting pss+swap vs Time
[2026-01-16 13:03:41] 2026-01-16 13:02:48,472 | INFO     | sum of square deviations: 183761585.0
[2026-01-16 13:03:41] 2026-01-16 13:02:48,473 | INFO     | sum of deviations: 3048252715.9999995
[2026-01-16 13:03:41] 2026-01-16 13:02:48,473 | INFO     | mean x: 1768565870.5
[2026-01-16 13:03:41] 2026-01-16 13:02:48,473 | INFO     | mean y: 2715183.5476190476
[2026-01-16 13:03:41] 2026-01-16 13:02:48,473 | INFO     | intersect: -29334405075.708572
[2026-01-16 13:03:41] 2026-01-16 13:02:48,473 | INFO     | chi2: 0.1153128402159363
[2026-01-16 13:03:41] 2026-01-16 13:02:48,473 | INFO     | current memory leak: 16.59 B/s (using 84 data points, chi2=0.12)
[2026-01-16 13:03:41] 2026-01-16 13:02:48,474 | INFO     | could have reported an average CPU frequency of 2400 MHz (7 samples)
[2026-01-16 13:03:41] 2026-01-16 13:02:48,477 | INFO     | ..............................
[2026-01-16 13:03:41] 2026-01-16 13:02:48,477 | INFO     | . Timing measurements:
[2026-01-16 13:03:41] 2026-01-16 13:02:48,477 | INFO     | . get job = 0 s
[2026-01-16 13:03:41] 2026-01-16 13:02:48,477 | INFO     | . initial setup = 3 s
[2026-01-16 13:03:41] 2026-01-16 13:02:48,477 | INFO     | . payload setup = 16 s
[2026-01-16 13:03:41] 2026-01-16 13:02:48,478 | INFO     | . stage-in = 0 s
[2026-01-16 13:03:41] 2026-01-16 13:02:48,478 | INFO     | . payload execution = 5529 s
[2026-01-16 13:03:41] 2026-01-16 13:02:48,478 | INFO     | . stage-out = 1 s
[2026-01-16 13:03:41] 2026-01-16 13:02:48,478 | INFO     | . log creation = 0 s
[2026-01-16 13:03:41] 2026-01-16 13:02:48,478 | INFO     | ..............................
[2026-01-16 13:03:41] 2026-01-16 13:02:48,500 | INFO     | time since job start (5602s) is within the limit (349056.0s)
[2026-01-16 13:03:41] 2026-01-16 13:02:49,170 | INFO     | 
[2026-01-16 13:03:41] 2026-01-16 13:02:49,170 | INFO     | job summary report
[2026-01-16 13:03:41] 2026-01-16 13:02:49,170 | INFO     | --------------------------------------------------
[2026-01-16 13:03:41] 2026-01-16 13:02:49,170 | INFO     | PanDA job id: 6969819985
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | task id: 48215263
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | errors: (none)
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | pilot state: finished 
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | transexitcode: 0
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | exeerrorcode: 0
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | exeerrordiag: 
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | exitcode: 0
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | exitmsg: OK
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | cpuconsumptiontime: 29858 s
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | nevents: 400
[2026-01-16 13:03:41] 2026-01-16 13:02:49,171 | INFO     | neventsw: 0
[2026-01-16 13:03:41] 2026-01-16 13:02:49,172 | INFO     | pid: 59093
[2026-01-16 13:03:41] 2026-01-16 13:02:49,172 | INFO     | pgrp: 59093
[2026-01-16 13:03:41] 2026-01-16 13:02:49,172 | INFO     | corecount: 12
[2026-01-16 13:03:41] 2026-01-16 13:02:49,172 | INFO     | event service: False
[2026-01-16 13:03:41] 2026-01-16 13:02:49,172 | INFO     | sizes: {0: 2283804, 1: 2284003, 2: 2284003, 12: 2284031, 14: 2284321, 23: 2284349, 5547: 2311146, 5549: 2320190, 5552: 2320246, 5566: 2320440}
[2026-01-16 13:03:41] 2026-01-16 13:02:49,172 | INFO     | --------------------------------------------------
[2026-01-16 13:03:41] 2026-01-16 13:02:49,172 | INFO     | 
[2026-01-16 13:03:41] 2026-01-16 13:02:49,172 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31427/slots/1
[2026-01-16 13:03:41] 2026-01-16 13:02:49,225 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,225 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,225 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,225 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,225 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,225 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,225 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,226 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 13:03:41] 2026-01-16 13:02:49,227 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,227 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 13:03:41] 2026-01-16 13:02:49,227 | INFO     | job 6969819985 has completed (purged errors)
[2026-01-16 13:03:41] 2026-01-16 13:02:49,230 | INFO     | overall cleanup function is called
[2026-01-16 13:03:41] 2026-01-16 13:02:50,244 | INFO     | --- collectZombieJob: --- 10, [59093]
[2026-01-16 13:03:41] 2026-01-16 13:02:50,244 | INFO     | zombie collector waiting for pid 59093
[2026-01-16 13:03:41] 2026-01-16 13:02:50,244 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 13:03:41] 2026-01-16 13:02:50,244 | INFO     | collected zombie processes
[2026-01-16 13:03:41] 2026-01-16 13:02:50,245 | INFO     | will attempt to kill all subprocesses of pid=59093
[2026-01-16 13:03:41] 2026-01-16 13:02:51,395 | INFO     | process IDs to be killed: [59093] (in reverse order)
[2026-01-16 13:03:41] 2026-01-16 13:02:51,960 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 13:03:41] 2026-01-16 13:02:51,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 13:03:41] 2026-01-16 13:02:52,000 | INFO     | did not find any defunct processes belonging to 59093
[2026-01-16 13:03:41] 2026-01-16 13:02:52,045 | INFO     | did not find any defunct processes belonging to 59093
[2026-01-16 13:03:41] 2026-01-16 13:02:52,045 | INFO     | ready for new job
[2026-01-16 13:03:41] 2026-01-16 13:02:52,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 13:03:41] 2026-01-16 13:02:52,047 | INFO     | ***************************************
[2026-01-16 13:03:41] 2026-01-16 13:02:52,048 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 13:03:41] 2026-01-16 13:02:52,048 | INFO     | ***************************************
[2026-01-16 13:03:41] 2026-01-16 13:02:52,048 | INFO     | 
[2026-01-16 13:03:41] 2026-01-16 13:02:52,067 | INFO     | architecture information:
[2026-01-16 13:03:41] 2026-01-16 13:02:52,072 | INFO     | executing command: cat /etc/os-release
[2026-01-16 13:03:41] 2026-01-16 13:02:52,122 | INFO     | cat /etc/os-release:
[2026-01-16 13:03:41] NAME="CentOS Linux"
[2026-01-16 13:03:41] VERSION="7 (Core)"
[2026-01-16 13:03:41] ID="centos"
[2026-01-16 13:03:41] ID_LIKE="rhel fedora"
[2026-01-16 13:03:41] VERSION_ID="7"
[2026-01-16 13:03:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 13:03:41] ANSI_COLOR="0;31"
[2026-01-16 13:03:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 13:03:41] HOME_URL="https://www.centos.org/"
[2026-01-16 13:03:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 13:03:41] 
[2026-01-16 13:03:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 13:03:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 13:03:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 13:03:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 13:03:41] 
[2026-01-16 13:03:41] 2026-01-16 13:02:52,123 | INFO     | ***************************************
[2026-01-16 13:03:41] 2026-01-16 13:02:52,626 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31427/slots/1
[2026-01-16 13:03:41] 2026-01-16 13:02:52,674 | INFO     | sufficient remaining disk space (284144173056 B)
[2026-01-16 13:03:41] 2026-01-16 13:02:52,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 13:03:41] 2026-01-16 13:02:52,675 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 13:03:41] 2026-01-16 13:02:52,675 | INFO     | update_server=False
[2026-01-16 13:03:41] 2026-01-16 13:02:52,675 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 13:03:41] 2026-01-16 13:02:52,678 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 13:03:41] 2026-01-16 13:02:52,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 13:03:41] 2026-01-16 13:02:52,678 | INFO     | aborting loop
[2026-01-16 13:03:41] 2026-01-16 13:02:52,790 | INFO     | all payload control threads have been joined
[2026-01-16 13:03:41] 2026-01-16 13:02:52,890 | INFO     | all data control threads have been joined
[2026-01-16 13:03:41] 2026-01-16 13:02:53,667 | INFO     | all job control threads have been joined
[2026-01-16 13:03:41] 2026-01-16 13:02:53,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 13:03:41] 2026-01-16 13:02:53,684 | INFO     | [job] job monitor thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:53,685 | INFO     | [job] retrieve thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:53,778 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 13:03:41] 2026-01-16 13:02:53,795 | INFO     | [payload] control thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:53,895 | INFO     | [data] control thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:54,014 | INFO     | [payload] failed_post thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:54,469 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:54,575 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:54,672 | INFO     | [job] control thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:54,686 | INFO     | [data] copytool_out thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:54,688 | INFO     | [job] queue monitor thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:54,715 | INFO     | [payload] validate_post thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:54,790 | INFO     | [job] validate thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:55,051 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:55,057 | INFO     | [data] copytool_in thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:02:57,784 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:03:02,889 | INFO     | job.realtimelogging is not enabled
[2026-01-16 13:03:41] 2026-01-16 13:03:03,894 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 13:03:41] 2026-01-16 13:03:22,844 | INFO     | PID=51786 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-16 13:03:41] 2026-01-16 13:03:22,844 | INFO     | .. there are 22 such processes running
[2026-01-16 13:03:41] 2026-01-16 13:03:22,844 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 13:03:41] 2026-01-16 13:03:22,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 13:03:41] 2026-01-16 13:03:22,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 13:03:41] 2026-01-16 13:03:35,028 | INFO     | [monitor] cgroup control has ended
[2026-01-16 13:03:41] 2026-01-16 13:03:36,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123885921216320)>', '<ExcThread(monitor, started 123885211072256)>']
[2026-01-16 13:03:41] 2026-01-16 13:03:36,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 13:03:41] 2026-01-16 13:03:36,918 | INFO     | [monitor] control thread has ended
[2026-01-16 13:03:41] 2026-01-16 13:03:41,058 | INFO     | all workflow threads have been joined
[2026-01-16 13:03:41] 2026-01-16 13:03:41,058 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 13:03:41] 2026-01-16 13:03:41,059 | INFO     | traces error code: 0
[2026-01-16 13:03:41] 2026-01-16 13:03:41,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 13:03:41] 2026-01-16 13:03:41,381 [wrapper] ==== pilot stdout END ====
[2026-01-16 13:03:41] 2026-01-16 13:03:41,388 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 13:03:41] 2026-01-16 13:03:41,394 [wrapper] pilotpid: 51786
[2026-01-16 13:03:41] 2026-01-16 13:03:41,401 [wrapper] Pilot exit status: 0
[2026-01-16 13:03:41] 2026-01-16 13:03:41,441 [wrapper] pandaids: 6969819985
[2026-01-16 13:03:41] 2026-01-16 13:03:41,608 [wrapper] cleanup supervisor_pilot  526131 51787
[2026-01-16 13:03:41] 2026-01-16 13:03:41,618 [wrapper] Test setup, not cleaning
[2026-01-16 13:03:41] 2026-01-16 13:03:41,627 [wrapper] apfmon messages muted
[2026-01-16 13:03:41] 2026-01-16 13:03:41,638 [wrapper] ==== wrapper stdout END ====
[2026-01-16 13:03:41] 2026-01-16 13:03:41,648 [wrapper] ==== wrapper stderr END ====
[2026-01-16 13:03:41]  *** Error codes and diagnostics ***
[2026-01-16 13:03:41]     "exeErrorCode": 0,
[2026-01-16 13:03:41]     "exeErrorDiag": "",
[2026-01-16 13:03:41]     "pilotErrorCode": 0,
[2026-01-16 13:03:41]     "pilotErrorDiag": "",
[2026-01-16 13:03:41]  *** Listing of results directory ***
[2026-01-16 13:03:41] total 736068
[2026-01-16 13:03:41] -rwx------ 1 boinc boinc     36322 Jan 14 23:30 runpilot2-wrapper.sh
[2026-01-16 13:03:41] -rw-r--r-- 1 boinc boinc      5112 Jan 14 23:30 queuedata.json
[2026-01-16 13:03:41] -rw-r--r-- 1 boinc boinc    579449 Jan 14 23:30 pilot3.tar.gz
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc       100 Jan 16 11:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 13:03:41] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 11:28 run_atlas
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc       105 Jan 16 11:28 job.xml
[2026-01-16 13:03:41] -rw-r--r-- 2 boinc boinc 593272243 Jan 16 11:28 EVNT.32794306._001502.pool.root.1
[2026-01-16 13:03:41] -rw-r--r-- 2 boinc boinc    592394 Jan 16 11:28 input.tar.gz
[2026-01-16 13:03:41] -rw-r--r-- 2 boinc boinc     15847 Jan 16 11:28 start_atlas.sh
[2026-01-16 13:03:41] drwxrwx--x 2 boinc boinc      4096 Jan 16 11:28 shared
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 11:28 init_data.xml
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc         0 Jan 16 11:28 boinc_setup_complete
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc         0 Jan 16 11:28 boinc_lockfile
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc      2509 Jan 16 11:28 pandaJob.out
[2026-01-16 13:03:41] -rw------- 1 boinc boinc   1004075 Jan 16 11:29 agis_schedconf.cvmfs.json
[2026-01-16 13:03:41] -rw------- 1 boinc boinc   1516246 Jan 16 11:29 agis_ddmendpoints.agis.ALL.json
[2026-01-16 13:03:41] drwx------ 5 boinc boinc      4096 Jan 16 11:29 pilot3
[2026-01-16 13:03:41] -rw------- 1 boinc boinc 154169825 Jan 16 13:01 HITS.48215263._037634.pool.root.1
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc       531 Jan 16 13:01 boinc_task_state.xml
[2026-01-16 13:03:41] -rw------- 1 boinc boinc        95 Jan 16 13:02 pilot_heartbeat.json
[2026-01-16 13:03:41] -rw------- 1 boinc boinc      1019 Jan 16 13:02 memory_monitor_summary.json
[2026-01-16 13:03:41] -rw------- 1 boinc boinc    400329 Jan 16 13:02 log.48215263._037634.job.log.tgz.1
[2026-01-16 13:03:41] -rw------- 1 boinc boinc      7727 Jan 16 13:02 heartbeat.json
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 13:03 boinc_mmap_file
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc        27 Jan 16 13:03 wrapper_checkpoint.txt
[2026-01-16 13:03:41] -rw------- 1 boinc boinc      4918 Jan 16 13:03 pilotlog.txt
[2026-01-16 13:03:41] -rw------- 1 boinc boinc    779769 Jan 16 13:03 log.48215263._037634.job.log.1
[2026-01-16 13:03:41] -rw------- 1 boinc boinc       357 Jan 16 13:03 output.list
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc       620 Jan 16 13:03 runtime_log
[2026-01-16 13:03:41] -rw------- 1 boinc boinc   1198080 Jan 16 13:03 result.tar.gz
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 13:03 runtime_log.err
[2026-01-16 13:03:41] -rw------- 1 boinc boinc       651 Jan 16 13:03 Bc0NDmJVP08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWvmKDmjwsTZm.diag
[2026-01-16 13:03:41] -rw-rw-r-- 1 boinc boinc     22116 Jan 16 13:03 stderr.txt
[2026-01-16 13:03:41] HITS file was successfully produced:
[2026-01-16 13:03:41] -rw------- 1 boinc boinc 154169825 Jan 16 13:01 shared/HITS.pool.root.1
[2026-01-16 13:03:41]  *** Contents of shared directory: ***
[2026-01-16 13:03:41] total 731704
[2026-01-16 13:03:41] -rw-r--r-- 2 boinc boinc 593272243 Jan 16 11:28 ATLAS.root_0
[2026-01-16 13:03:41] -rw-r--r-- 2 boinc boinc    592394 Jan 16 11:28 input.tar.gz
[2026-01-16 13:03:41] -rw-r--r-- 2 boinc boinc     15847 Jan 16 11:28 start_atlas.sh
[2026-01-16 13:03:41] -rw------- 1 boinc boinc 154169825 Jan 16 13:01 HITS.pool.root.1
[2026-01-16 13:03:41] -rw------- 1 boinc boinc   1198080 Jan 16 13:03 result.tar.gz
13:03:43 (47583): run_atlas exited; CPU time 30165.626909
13:03:43 (47583): called boinc_finish(0)

</stderr_txt>
]]>

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