Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:06:07 (2329813): wrapper (7.7.26015): starting
00:06:07 (2329813): wrapper: running run_atlas (--nthreads 9)
[2026-01-15 00:06:07] Arguments: --nthreads 9
[2026-01-15 00:06:07] Threads: 9
[2026-01-15 00:06:07] Checking for CVMFS
[2026-01-15 00:06:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 00:06:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 00:06:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 00:06:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 00:06:10] 2.13.3.0 13071 38275 317024 155156 2 267 32128296 32935936 30133 16776704 0 40251856 99.732 38541057 14568 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 00:06:10] CVMFS is ok
[2026-01-15 00:06:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 00:06:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 00:06:10] Further information can be found at the LHC@home message board.
[2026-01-15 00:06:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 00:06:10] Checking for apptainer binary...
[2026-01-15 00:06:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 00:06:10] Running /usr/bin/apptainer --version
[2026-01-15 00:06:10] apptainer version 1.4.5-2.el9
[2026-01-15 00:06:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 00:06:12] c6-12-25-1.aglt2.org
[2026-01-15 00:06:12] apptainer works
[2026-01-15 00:06:12] Set ATHENA_PROC_NUMBER=9
[2026-01-15 00:06:12] Set ATHENA_CORE_NUMBER=9
[2026-01-15 00:06:12] Starting ATLAS job with PandaID=6969523347
[2026-01-15 00:06:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 21:09:27]  *** The last 200 lines of the pilot log: ***
[2026-01-15 21:09:27] 2026-01-16 01:31:16,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 21:09:27] 2026-01-16 01:31:18,552 | INFO     | time since job start (73381s) is within the limit (349056.0s)
[2026-01-15 21:09:27] 2026-01-16 01:31:19,259 | INFO     | monitor loop #2433: job 0:6969523347 is in state 'finished'
[2026-01-15 21:09:27] 2026-01-16 01:31:19,259 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 21:09:27] 2026-01-16 01:31:19,448 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 21:09:27] 2026-01-16 01:31:19,644 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 1000.0040937499999
[2026-01-15 21:09:27] 2026-01-16 01:31:19,953 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6969523347/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 21:09:27] 2026-01-16 01:31:19,955 | INFO     | extracted standard info from prmon json
[2026-01-15 21:09:27] 2026-01-16 01:31:19,955 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 21:09:27] 2026-01-16 01:31:19,976 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 21:09:27] 2026-01-16 01:31:19,977 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 21:09:27] 2026-01-16 01:31:19,977 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 21:09:27] 2026-01-16 01:31:20,212 | INFO     | fitting pss+swap vs Time
[2026-01-15 21:09:27] 2026-01-16 01:31:20,216 | INFO     | sum of square deviations: 533175388993.0261
[2026-01-15 21:09:27] 2026-01-16 01:31:20,533 | INFO     | sum of deviations: 1705514991055.282
[2026-01-15 21:09:27] 2026-01-16 01:31:20,534 | INFO     | mean x: 1768490479.942404
[2026-01-15 21:09:27] 2026-01-16 01:31:20,534 | INFO     | mean y: 2521888.207011686
[2026-01-15 21:09:27] 2026-01-16 01:31:20,535 | INFO     | intersect: -5654504087.385744
[2026-01-15 21:09:27] 2026-01-16 01:31:20,561 | INFO     | chi2: 16.08718569262214
[2026-01-15 21:09:27] 2026-01-16 01:31:20,586 | INFO     | sum of square deviations: 526528831659.851
[2026-01-15 21:09:27] 2026-01-16 01:31:20,711 | INFO     | time since job start (73383s) is within the limit (349056.0s)
[2026-01-15 21:09:27] 2026-01-16 01:31:21,167 | INFO     | sum of deviations: 2093737724205.0566
[2026-01-15 21:09:27] 2026-01-16 01:31:21,191 | INFO     | mean x: 1768490327.4551551
[2026-01-15 21:09:27] 2026-01-16 01:31:21,191 | INFO     | mean y: 2530795.2908633696
[2026-01-15 21:09:27] 2026-01-16 01:31:21,192 | INFO     | intersect: -7029856969.329539
[2026-01-15 21:09:27] 2026-01-16 01:31:21,219 | INFO     | chi2: 12.486059910582163
[2026-01-15 21:09:27] 2026-01-16 01:31:21,219 | INFO     | current chi2=12.486059910582163 (change=22.38505759084707 %)
[2026-01-15 21:09:27] 2026-01-16 01:31:21,220 | INFO     | right removable region: 1192
[2026-01-15 21:09:27] 2026-01-16 01:31:21,249 | INFO     | sum of square deviations: 526526462286.0272
[2026-01-15 21:09:27] 2026-01-16 01:31:21,773 | INFO     | sum of deviations: 1288808965438.496
[2026-01-15 21:09:27] 2026-01-16 01:31:21,794 | INFO     | mean x: 1768490632.4568315
[2026-01-15 21:09:27] 2026-01-16 01:31:21,795 | INFO     | mean y: 2531444.9513830678
[2026-01-15 21:09:27] 2026-01-16 01:31:21,795 | INFO     | intersect: -4326304322.40687
[2026-01-15 21:09:27] 2026-01-16 01:31:21,818 | INFO     | chi2: 11.857000768262676
[2026-01-15 21:09:27] 2026-01-16 01:31:21,835 | INFO     | current chi2=11.857000768262676 (change=26.29536952693658 %)
[2026-01-15 21:09:27] 2026-01-16 01:31:21,844 | INFO     | sum of square deviations: 519933316222.7846
[2026-01-15 21:09:27] 2026-01-16 01:31:22,072 | INFO     | monitor loop #2434: job 0:6969523347 is in state 'finished'
[2026-01-15 21:09:27] 2026-01-16 01:31:22,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 21:09:27] 2026-01-16 01:31:23,005 | INFO     | sum of deviations: 956068469797.1635
[2026-01-15 21:09:27] 2026-01-16 01:31:23,006 | INFO     | mean x: 1768490784.9680135
[2026-01-15 21:09:27] 2026-01-16 01:31:23,006 | INFO     | mean y: 2539141.1885521887
[2026-01-15 21:09:27] 2026-01-16 01:31:23,006 | INFO     | intersect: -3249413033.982827
[2026-01-15 21:09:27] 2026-01-16 01:31:23,051 | INFO     | chi2: 9.255050993966787
[2026-01-15 21:09:27] 2026-01-16 01:31:23,052 | INFO     | current chi2=9.255050993966787 (change=21.944417691702103 %)
[2026-01-15 21:09:27] 2026-01-16 01:31:23,052 | INFO     | left removable region: 20
[2026-01-15 21:09:27] 2026-01-16 01:31:23,077 | INFO     | sum of square deviations: 499208310336.98956
[2026-01-15 21:09:27] 2026-01-16 01:31:23,395 | INFO     | sum of deviations: 984962438832.8197
[2026-01-15 21:09:27] 2026-01-16 01:31:23,395 | INFO     | mean x: 1768490907.0025597
[2026-01-15 21:09:27] 2026-01-16 01:31:23,396 | INFO     | mean y: 2560379.726109215
[2026-01-15 21:09:27] 2026-01-16 01:31:23,396 | INFO     | intersect: -3486758769.7068048
[2026-01-15 21:09:27] 2026-01-16 01:31:23,421 | INFO     | chi2: 2.5665034107025275
[2026-01-15 21:09:27] 2026-01-16 01:31:23,422 | INFO     | current memory leak: 1.97 B/s (using 1172 data points, chi2=2.57)
[2026-01-15 21:09:27] 2026-01-16 01:31:23,445 | INFO     | could have reported an average CPU frequency of 999 MHz (43 samples)
[2026-01-15 21:09:27] 2026-01-16 01:31:23,445 | INFO     | ..............................
[2026-01-15 21:09:27] 2026-01-16 01:31:23,470 | INFO     | . Timing measurements:
[2026-01-15 21:09:27] 2026-01-16 01:31:23,470 | INFO     | . get job = 0 s
[2026-01-15 21:09:27] 2026-01-16 01:31:23,470 | INFO     | . initial setup = 15 s
[2026-01-15 21:09:27] 2026-01-16 01:31:23,471 | INFO     | . payload setup = 82 s
[2026-01-15 21:09:27] 2026-01-16 01:31:23,471 | INFO     | . stage-in = 0 s
[2026-01-15 21:09:27] 2026-01-16 01:31:23,471 | INFO     | . payload execution = 73089 s
[2026-01-15 21:09:27] 2026-01-16 01:31:23,471 | INFO     | . stage-out = 13 s
[2026-01-15 21:09:27] 2026-01-16 01:31:23,471 | INFO     | . log creation = 5 s
[2026-01-15 21:09:27] 2026-01-16 01:31:23,472 | INFO     | ..............................
[2026-01-15 21:09:27] 2026-01-16 01:31:26,053 | INFO     | 
[2026-01-15 21:09:27] 2026-01-16 01:31:26,053 | INFO     | job summary report
[2026-01-15 21:09:27] 2026-01-16 01:31:26,054 | INFO     | --------------------------------------------------
[2026-01-15 21:09:27] 2026-01-16 01:31:26,054 | INFO     | PanDA job id: 6969523347
[2026-01-15 21:09:27] 2026-01-16 01:31:26,054 | INFO     | task id: 48215263
[2026-01-15 21:09:27] 2026-01-16 01:31:26,054 | INFO     | errors: (none)
[2026-01-15 21:09:27] 2026-01-16 01:31:26,055 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 21:09:27] 2026-01-16 01:31:26,055 | INFO     | pilot state: finished 
[2026-01-15 21:09:27] 2026-01-16 01:31:26,055 | INFO     | transexitcode: 0
[2026-01-15 21:09:27] 2026-01-16 01:31:26,055 | INFO     | exeerrorcode: 0
[2026-01-15 21:09:27] 2026-01-16 01:31:26,055 | INFO     | exeerrordiag: 
[2026-01-15 21:09:27] 2026-01-16 01:31:26,056 | INFO     | exitcode: 0
[2026-01-15 21:09:27] 2026-01-16 01:31:26,056 | INFO     | exitmsg: OK
[2026-01-15 21:09:27] 2026-01-16 01:31:26,056 | INFO     | cpuconsumptiontime: 74683 s
[2026-01-15 21:09:27] 2026-01-16 01:31:26,056 | INFO     | nevents: 400
[2026-01-15 21:09:27] 2026-01-16 01:31:26,056 | INFO     | neventsw: 0
[2026-01-15 21:09:27] 2026-01-16 01:31:26,081 | INFO     | pid: 2417211
[2026-01-15 21:09:27] 2026-01-16 01:31:26,081 | INFO     | pgrp: 2417211
[2026-01-15 21:09:27] 2026-01-16 01:31:26,081 | INFO     | corecount: 9
[2026-01-15 21:09:27] 2026-01-16 01:31:26,160 | INFO     | event service: False
[2026-01-15 21:09:27] 2026-01-16 01:31:26,160 | INFO     | sizes: {0: 2283124, 1: 2283725, 4: 2283809, 9: 2283837, 10: 2283837, 12: 2284192, 13: 2284192, 28: 2284248, 42: 2284276, 54: 2284332, 68: 2284360, 74: 2284930, 80:
[2026-01-15 21:09:27] 2026-01-16 01:31:26,161 | INFO     | --------------------------------------------------
[2026-01-15 21:09:27] 2026-01-16 01:31:26,161 | INFO     | 
[2026-01-15 21:09:27] 2026-01-16 01:31:26,161 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2026-01-15 21:09:27] 2026-01-16 01:31:26,425 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,425 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,426 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,426 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,426 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,426 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,426 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,427 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,427 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,427 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,427 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,429 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,429 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,429 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 21:09:27] 2026-01-16 01:31:26,429 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,429 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 21:09:27] 2026-01-16 01:31:26,430 | INFO     | job 6969523347 has completed (purged errors)
[2026-01-15 21:09:27] 2026-01-16 01:31:26,430 | INFO     | overall cleanup function is called
[2026-01-15 21:09:27] 2026-01-16 01:31:27,461 | INFO     | --- collectZombieJob: --- 10, [2417211]
[2026-01-15 21:09:27] 2026-01-16 01:31:27,461 | INFO     | zombie collector waiting for pid 2417211
[2026-01-15 21:09:27] 2026-01-16 01:31:27,462 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 21:09:27] 2026-01-16 01:31:27,462 | INFO     | collected zombie processes
[2026-01-15 21:09:27] 2026-01-16 01:31:27,462 | INFO     | will attempt to kill all subprocesses of pid=2417211
[2026-01-15 21:09:27] 2026-01-16 01:31:36,301 | INFO     | PID=2350976 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-15 21:09:27] 2026-01-16 01:31:36,301 | INFO     | .. there are 36 such processes running
[2026-01-15 21:09:27] 2026-01-16 01:31:37,118 | INFO     | process IDs to be killed: [2417211] (in reverse order)
[2026-01-15 21:09:27] 2026-01-16 01:31:37,761 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 21:09:27] 2026-01-16 01:31:37,762 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 21:09:27] 2026-01-16 01:31:37,852 | INFO     | did not find any defunct processes belonging to 2417211
[2026-01-15 21:09:27] 2026-01-16 01:31:37,945 | INFO     | did not find any defunct processes belonging to 2417211
[2026-01-15 21:09:27] 2026-01-16 01:31:37,946 | INFO     | ready for new job
[2026-01-15 21:09:27] 2026-01-16 01:31:37,947 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 21:09:27] 2026-01-16 01:31:37,964 | INFO     | ***************************************
[2026-01-15 21:09:27] 2026-01-16 01:31:37,964 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 21:09:27] 2026-01-16 01:31:37,969 | INFO     | ***************************************
[2026-01-15 21:09:27] 2026-01-16 01:31:37,969 | INFO     | 
[2026-01-15 21:09:27] 2026-01-16 01:31:38,000 | INFO     | architecture information:
[2026-01-15 21:09:27] 2026-01-16 01:31:38,005 | INFO     | executing command: cat /etc/os-release
[2026-01-15 21:09:27] 2026-01-16 01:31:38,107 | INFO     | cat /etc/os-release:
[2026-01-15 21:09:27] NAME="CentOS Linux"
[2026-01-15 21:09:27] VERSION="7 (Core)"
[2026-01-15 21:09:27] ID="centos"
[2026-01-15 21:09:27] ID_LIKE="rhel fedora"
[2026-01-15 21:09:27] VERSION_ID="7"
[2026-01-15 21:09:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 21:09:27] ANSI_COLOR="0;31"
[2026-01-15 21:09:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 21:09:27] HOME_URL="https://www.centos.org/"
[2026-01-15 21:09:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 21:09:27] 
[2026-01-15 21:09:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 21:09:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 21:09:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 21:09:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 21:09:27] 
[2026-01-15 21:09:27] 2026-01-16 01:31:38,108 | INFO     | ***************************************
[2026-01-15 21:09:27] 2026-01-16 01:31:38,612 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2026-01-15 21:09:27] 2026-01-16 01:31:38,762 | INFO     | sufficient remaining disk space (64438140928 B)
[2026-01-15 21:09:27] 2026-01-16 01:31:38,763 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 21:09:27] 2026-01-16 01:31:38,763 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 21:09:27] 2026-01-16 01:31:38,763 | INFO     | update_server=False
[2026-01-15 21:09:27] 2026-01-16 01:31:38,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 21:09:27] 2026-01-16 01:31:38,764 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 21:09:27] 2026-01-16 01:31:38,765 | INFO     | aborting loop
[2026-01-15 21:09:27] 2026-01-16 01:31:38,872 | INFO     | all job control threads have been joined
[2026-01-15 21:09:27] 2026-01-16 01:31:39,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 21:09:27] 2026-01-16 01:31:39,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 21:09:27] 2026-01-16 01:31:39,591 | INFO     | all data control threads have been joined
[2026-01-15 21:09:27] 2026-01-16 01:31:39,615 | INFO     | all payload control threads have been joined
[2026-01-15 21:09:27] 2026-01-16 01:31:39,765 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 21:09:27] 2026-01-16 01:31:39,770 | INFO     | [job] retrieve thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:39,771 | INFO     | [job] job monitor thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:39,878 | INFO     | [job] control thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:39,994 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,099 | INFO     | [payload] failed_post thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,245 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,246 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,247 | INFO     | [data] copytool_in thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,364 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,374 | INFO     | [job] queue monitor thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,555 | INFO     | [job] validate thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,597 | INFO     | [data] control thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,620 | INFO     | [payload] control thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:40,793 | INFO     | [payload] validate_post thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:41,215 | INFO     | [data] copytool_out thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:43,774 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 21:09:27] 2026-01-16 01:31:51,147 | INFO     | [monitor] cgroup control has ended
[2026-01-15 21:09:27] 2026-01-16 01:31:51,598 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139650035464000)>', '<ExcThread(monitor, started 139649477486336)>']
[2026-01-15 21:09:27] 2026-01-16 01:31:56,625 | INFO     | all workflow threads have been joined
[2026-01-15 21:09:27] 2026-01-16 01:31:56,625 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 21:09:27] 2026-01-16 01:31:56,626 | INFO     | traces error code: 0
[2026-01-15 21:09:27] 2026-01-16 01:31:56,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 21:09:27] 2026-01-16 01:32:11,262 | INFO     | PID=2350976 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 21:09:27] 2026-01-16 01:32:11,267 | INFO     | .. there are 36 such processes running
[2026-01-15 21:09:27] 2026-01-16 01:32:11,270 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 21:09:27] 2026-01-16 01:32:11,270 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 21:09:27] 2026-01-16 01:32:11,270 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 21:09:27] 2026-01-16 01:32:11,275 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 21:09:27] 2026-01-16 01:32:11,275 | INFO     | [monitor] control thread has ended
[2026-01-15 21:09:27] 2026-01-16 01:32:12,243 [wrapper] ==== pilot stdout END ====
[2026-01-15 21:09:27] 2026-01-16 01:32:12,270 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 21:09:27] 2026-01-16 01:32:12,311 [wrapper] pilotpid: 2350976
[2026-01-15 21:09:27] 2026-01-16 01:32:12,350 [wrapper] Pilot exit status: 0
[2026-01-15 21:09:27] 2026-01-16 01:32:12,504 [wrapper] pandaids: 6969523347
[2026-01-15 21:09:27] 2026-01-16 01:32:13,334 [wrapper] cleanup supervisor_pilot 2280689 2350977
[2026-01-15 21:09:27] 2026-01-16 01:32:13,364 [wrapper] Test setup, not cleaning
[2026-01-15 21:09:27] 2026-01-16 01:32:13,404 [wrapper] apfmon messages muted
[2026-01-15 21:09:27] 2026-01-16 01:32:13,436 [wrapper] ==== wrapper stdout END ====
[2026-01-15 21:09:27] 2026-01-16 01:32:13,461 [wrapper] ==== wrapper stderr END ====
[2026-01-15 21:09:27]  *** Error codes and diagnostics ***
[2026-01-15 21:09:27]     "exeErrorCode": 0,
[2026-01-15 21:09:27]     "exeErrorDiag": "",
[2026-01-15 21:09:27]     "pilotErrorCode": 0,
[2026-01-15 21:09:27]     "pilotErrorDiag": "",
[2026-01-15 21:09:27]  *** Listing of results directory ***
[2026-01-15 21:09:27] total 751312
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 11:41 pilot3.tar.gz
[2026-01-15 21:09:27] -rwx------. 1 boincer umatlas     36322 Jan 14 11:44 runpilot2-wrapper.sh
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 11:44 queuedata.json
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas       100 Jan 15 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 21:09:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 00:06 run_atlas
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas       105 Jan 15 00:06 job.xml
[2026-01-15 21:09:27] -rw-r--r--. 2 boincer umatlas 597207478 Jan 15 00:06 EVNT.32794306._001111.pool.root.1
[2026-01-15 21:09:27] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 00:06 start_atlas.sh
[2026-01-15 21:09:27] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 00:06 shared
[2026-01-15 21:09:27] -rw-r--r--. 2 boincer umatlas    592407 Jan 15 00:06 input.tar.gz
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas         0 Jan 15 00:06 boinc_lockfile
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas      2509 Jan 15 00:06 pandaJob.out
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas        57 Jan 15 00:06 setup.sh.local
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas    999472 Jan 15 00:08 agis_schedconf.cvmfs.json
[2026-01-15 21:09:27] drwx------. 5 boincer umatlas      4096 Jan 15 00:08 pilot3
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas 153440683 Jan 15 20:21 HITS.48215263._027748.pool.root.1
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas       531 Jan 15 20:22 boinc_task_state.xml
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas      1045 Jan 15 20:30 memory_monitor_summary.json
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas   1516246 Jan 15 20:30 agis_ddmendpoints.agis.ALL.json
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas   1038252 Jan 15 20:30 log.48215263._027748.job.log.tgz.1
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas      7836 Jan 15 20:31 heartbeat.json
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas        96 Jan 15 20:32 pilot_heartbeat.json
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas       823 Jan 15 20:32 pilotlog.txt
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas   6341494 Jan 15 20:32 log.48215263._027748.job.log.1
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas       357 Jan 15 20:32 output.list
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas       620 Jan 15 20:32 runtime_log
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas   7403520 Jan 15 20:32 result.tar.gz
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas      9353 Jan 15 20:32 runtime_log.err
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas       661 Jan 15 20:32 AnGMDmw9I08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFsrKDmP0bgvn.diag
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas      6856 Jan 15 21:02 init_data.xml
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 21:09 boinc_mmap_file
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas     21538 Jan 15 21:09 stderr.txt
[2026-01-15 21:09:27] -rw-r--r--. 1 boincer umatlas        27 Jan 15 21:09 wrapper_checkpoint.txt
[2026-01-15 21:09:27] HITS file was successfully produced:
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas 153440683 Jan 15 20:21 shared/HITS.pool.root.1
[2026-01-15 21:09:27]  *** Contents of shared directory: ***
[2026-01-15 21:09:27] total 740896
[2026-01-15 21:09:27] -rw-r--r--. 2 boincer umatlas 597207478 Jan 15 00:06 ATLAS.root_0
[2026-01-15 21:09:27] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 00:06 start_atlas.sh
[2026-01-15 21:09:27] -rw-r--r--. 2 boincer umatlas    592407 Jan 15 00:06 input.tar.gz
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas 153440683 Jan 15 20:21 HITS.pool.root.1
[2026-01-15 21:09:27] -rw-------. 1 boincer umatlas   7403520 Jan 15 20:32 result.tar.gz
21:09:29 (2329813): run_atlas exited; CPU time 81712.381276
21:09:29 (2329813): called boinc_finish(0)

</stderr_txt>
]]>

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