Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:04:41 (1154651): wrapper (7.7.26015): starting
07:04:41 (1154651): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 07:04:41] Arguments: --nthreads 4
[2026-01-15 07:04:41] Threads: 4
[2026-01-15 07:04:41] Checking for CVMFS
[2026-01-15 07:04:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 07:04:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 07:04:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 07:04:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 07:04:41] 2.9.2.0 313005 1794 95316 155157 1 188 21639390 36864001 0 130560 0 2263965 99.993 69918 20606 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 07:04:41] CVMFS is ok
[2026-01-15 07:04:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 07:04:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 07:04:41] Further information can be found at the LHC@home message board.
[2026-01-15 07:04:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 07:04:41] Checking for apptainer binary...
[2026-01-15 07:04:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 07:04:41] Running /usr/bin/apptainer --version
[2026-01-15 07:04:41] apptainer version 1.4.1-1.1
[2026-01-15 07:04:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 07:04:41] thA334
[2026-01-15 07:04:41] apptainer works
[2026-01-15 07:04:41] Set ATHENA_PROC_NUMBER=4
[2026-01-15 07:04:41] Set ATHENA_CORE_NUMBER=4
[2026-01-15 07:04:42] Starting ATLAS job with PandaID=6969984836
[2026-01-15 07:04:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 07:51:58]  *** The last 200 lines of the pilot log: ***
[2026-01-15 07:51:58] 2026-01-15 06:51:23,046 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 07:51:58] 2026-01-15 06:51:23,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 07:51:58] 2026-01-15 06:51:23,046 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 07:51:58] 2026-01-15 06:51:23,046 | INFO     | job 6969984836 has completed (purged errors)
[2026-01-15 07:51:58] 2026-01-15 06:51:23,046 | INFO     | overall cleanup function is called
[2026-01-15 07:51:58] 2026-01-15 06:51:24,053 | INFO     | --- collectZombieJob: --- 10, [1164987]
[2026-01-15 07:51:58] 2026-01-15 06:51:24,053 | INFO     | zombie collector waiting for pid 1164987
[2026-01-15 07:51:58] 2026-01-15 06:51:24,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 07:51:58] 2026-01-15 06:51:24,053 | INFO     | collected zombie processes
[2026-01-15 07:51:58] 2026-01-15 06:51:24,054 | INFO     | will attempt to kill all subprocesses of pid=1164987
[2026-01-15 07:51:58] 2026-01-15 06:51:24,098 | INFO     | process IDs to be killed: [1164987] (in reverse order)
[2026-01-15 07:51:58] 2026-01-15 06:51:24,127 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 07:51:58] 2026-01-15 06:51:24,127 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 07:51:58] 2026-01-15 06:51:24,129 | INFO     | did not find any defunct processes belonging to 1164987
[2026-01-15 07:51:58] 2026-01-15 06:51:24,130 | INFO     | did not find any defunct processes belonging to 1164987
[2026-01-15 07:51:58] 2026-01-15 06:51:24,130 | INFO     | ready for new job
[2026-01-15 07:51:58] 2026-01-15 06:51:24,130 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 07:51:58] 2026-01-15 06:51:24,131 | INFO     | ***************************************
[2026-01-15 07:51:58] 2026-01-15 06:51:24,131 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 07:51:58] 2026-01-15 06:51:24,131 | INFO     | ***************************************
[2026-01-15 07:51:58] 2026-01-15 06:51:24,131 | INFO     | 
[2026-01-15 07:51:58] 2026-01-15 06:51:24,131 | INFO     | architecture information:
[2026-01-15 07:51:58] 2026-01-15 06:51:24,131 | INFO     | executing command: cat /etc/os-release
[2026-01-15 07:51:58] 2026-01-15 06:51:24,143 | INFO     | cat /etc/os-release:
[2026-01-15 07:51:58] NAME="CentOS Linux"
[2026-01-15 07:51:58] VERSION="7 (Core)"
[2026-01-15 07:51:58] ID="centos"
[2026-01-15 07:51:58] ID_LIKE="rhel fedora"
[2026-01-15 07:51:58] VERSION_ID="7"
[2026-01-15 07:51:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 07:51:58] ANSI_COLOR="0;31"
[2026-01-15 07:51:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 07:51:58] HOME_URL="https://www.centos.org/"
[2026-01-15 07:51:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 07:51:58] 
[2026-01-15 07:51:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 07:51:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 07:51:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 07:51:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 07:51:58] 
[2026-01-15 07:51:58] 2026-01-15 06:51:24,144 | INFO     | ***************************************
[2026-01-15 07:51:58] 2026-01-15 06:51:24,647 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 07:51:58] 2026-01-15 06:51:24,663 | INFO     | sufficient remaining disk space (238531117056 B)
[2026-01-15 07:51:58] 2026-01-15 06:51:24,664 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 07:51:58] 2026-01-15 06:51:24,664 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 07:51:58] 2026-01-15 06:51:24,664 | INFO     | update_server=False
[2026-01-15 07:51:58] 2026-01-15 06:51:24,664 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 07:51:58] 2026-01-15 06:51:24,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 07:51:58] 2026-01-15 06:51:24,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:51:58] 2026-01-15 06:51:24,664 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 07:51:58] 2026-01-15 06:51:24,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:51:58] 2026-01-15 06:51:24,805 | INFO     | aborting loop
[2026-01-15 07:51:58] 2026-01-15 06:51:24,823 | INFO     | all payload control threads have been joined
[2026-01-15 07:51:58] 2026-01-15 06:51:25,055 | INFO     | all data control threads have been joined
[2026-01-15 07:51:58] 2026-01-15 06:51:25,670 | INFO     | [job] retrieve thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:25,670 | INFO     | [job] queue monitor thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:25,776 | INFO     | [payload] validate_post thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:25,810 | INFO     | [job] job monitor thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:25,829 | INFO     | [payload] control thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:26,061 | INFO     | [data] control thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:26,250 | INFO     | all job control threads have been joined
[2026-01-15 07:51:58] 2026-01-15 06:51:26,329 | INFO     | [job] validate thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:26,451 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:26,478 | INFO     | [data] copytool_in thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:26,521 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:26,523 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:26,666 | INFO     | [data] copytool_out thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:26,827 | INFO     | [payload] failed_post thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:27,256 | INFO     | [job] control thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:28,671 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:35,217 | INFO     | job.realtimelogging is not enabled
[2026-01-15 07:51:58] 2026-01-15 06:51:36,222 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 07:51:58] 2026-01-15 06:51:51,784 | INFO     | [monitor] cgroup control has ended
[2026-01-15 07:51:58] 2026-01-15 06:51:53,144 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216258295616)>', '<ExcThread(monitor, started 140215758866176)>']
[2026-01-15 07:51:58] 2026-01-15 06:51:54,675 | INFO     | PID=1158443 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 07:51:58] 2026-01-15 06:51:54,675 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 07:51:58] 2026-01-15 06:51:54,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 07:51:58] 2026-01-15 06:51:54,676 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 07:51:58] 2026-01-15 06:51:54,676 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 07:51:58] 2026-01-15 06:51:54,676 | INFO     | [monitor] control thread has ended
[2026-01-15 07:51:58] 2026-01-15 06:51:58,169 | INFO     | all workflow threads have been joined
[2026-01-15 07:51:58] 2026-01-15 06:51:58,170 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 07:51:58] 2026-01-15 06:51:58,170 | INFO     | traces error code: 0
[2026-01-15 07:51:58] 2026-01-15 06:51:58,170 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 07:51:58] 2026-01-15 06:51:58,238 [wrapper] ==== pilot stdout END ====
[2026-01-15 07:51:58] 2026-01-15 06:51:58,242 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 07:51:58] 2026-01-15 06:51:58,246 [wrapper] pilotpid: 1158443
[2026-01-15 07:51:58] 2026-01-15 06:51:58,249 [wrapper] Pilot exit status: 0
[2026-01-15 07:51:58] 2026-01-15 06:51:58,258 [wrapper] pandaids: 6969984836
[2026-01-15 07:51:58] 2026-01-15 06:51:58,277 [wrapper] cleanup supervisor_pilot 1174322 1158444
[2026-01-15 07:51:58] 2026-01-15 06:51:58,280 [wrapper] Test setup, not cleaning
[2026-01-15 07:51:58] 2026-01-15 06:51:58,283 [wrapper] apfmon messages muted
[2026-01-15 07:51:58] 2026-01-15 06:51:58,286 [wrapper] ==== wrapper stdout END ====
[2026-01-15 07:51:58] 2026-01-15 06:51:58,289 [wrapper] ==== wrapper stderr END ====
[2026-01-15 07:51:58]  *** Error codes and diagnostics ***
[2026-01-15 07:51:58]     "exeErrorCode": 0,
[2026-01-15 07:51:58]     "exeErrorDiag": "",
[2026-01-15 07:51:58]     "pilotErrorCode": 0,
[2026-01-15 07:51:58]     "pilotErrorDiag": "",
[2026-01-15 07:51:58]  *** Listing of results directory ***
[2026-01-15 07:51:58] total 731280
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc    579449 Jan 15 02:12 pilot3.tar.gz
[2026-01-15 07:51:58] -rwx------ 1 boinc boinc     36322 Jan 15 02:16 runpilot2-wrapper.sh
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc      5112 Jan 15 02:19 queuedata.json
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc       100 Jan 15 07:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 07:51:58] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 07:04 run_atlas
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc       105 Jan 15 07:04 job.xml
[2026-01-15 07:51:58] -rw-r--r-- 2 boinc boinc 592277112 Jan 15 07:04 EVNT.32794306._001592.pool.root.1
[2026-01-15 07:51:58] -rw-r--r-- 2 boinc boinc    592411 Jan 15 07:04 input.tar.gz
[2026-01-15 07:51:58] -rw-r--r-- 2 boinc boinc     15847 Jan 15 07:04 start_atlas.sh
[2026-01-15 07:51:58] drwxrwx--x 2 boinc boinc      4096 Jan 15 07:04 shared
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc         0 Jan 15 07:04 boinc_setup_complete
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc      6369 Jan 15 07:04 init_data.xml
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc         0 Jan 15 07:04 boinc_lockfile
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc      2508 Jan 15 07:04 pandaJob.out
[2026-01-15 07:51:58] -rw------- 1 boinc boinc    999472 Jan 15 07:04 agis_schedconf.cvmfs.json
[2026-01-15 07:51:58] -rw------- 1 boinc boinc   1516246 Jan 15 07:04 agis_ddmendpoints.agis.ALL.json
[2026-01-15 07:51:58] drwx------ 5 boinc boinc      4096 Jan 15 07:04 pilot3
[2026-01-15 07:51:58] -rw------- 1 boinc boinc 151306817 Jan 15 07:50 HITS.48215263._039933.pool.root.1
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc       530 Jan 15 07:51 boinc_task_state.xml
[2026-01-15 07:51:58] -rw------- 1 boinc boinc        95 Jan 15 07:51 pilot_heartbeat.json
[2026-01-15 07:51:58] -rw------- 1 boinc boinc      1015 Jan 15 07:51 memory_monitor_summary.json
[2026-01-15 07:51:58] -rw------- 1 boinc boinc    231069 Jan 15 07:51 log.48215263._039933.job.log.tgz.1
[2026-01-15 07:51:58] -rw------- 1 boinc boinc      7752 Jan 15 07:51 heartbeat.json
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc        27 Jan 15 07:51 wrapper_checkpoint.txt
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc      8192 Jan 15 07:51 boinc_mmap_file
[2026-01-15 07:51:58] -rw------- 1 boinc boinc      4824 Jan 15 07:51 pilotlog.txt
[2026-01-15 07:51:58] -rw------- 1 boinc boinc    433758 Jan 15 07:51 log.48215263._039933.job.log.1
[2026-01-15 07:51:58] -rw------- 1 boinc boinc       357 Jan 15 07:51 output.list
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc       620 Jan 15 07:51 runtime_log
[2026-01-15 07:51:58] -rw------- 1 boinc boinc    686080 Jan 15 07:51 result.tar.gz
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc      8897 Jan 15 07:51 runtime_log.err
[2026-01-15 07:51:58] -rw------- 1 boinc boinc       657 Jan 15 07:51 7zJMDmN9Q08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnNnKDmZzH8Fn.diag
[2026-01-15 07:51:58] -rw-r--r-- 1 boinc boinc     11205 Jan 15 07:51 stderr.txt
[2026-01-15 07:51:58] HITS file was successfully produced:
[2026-01-15 07:51:58] -rw------- 1 boinc boinc 151306817 Jan 15 07:50 shared/HITS.pool.root.1
[2026-01-15 07:51:58]  *** Contents of shared directory: ***
[2026-01-15 07:51:58] total 727436
[2026-01-15 07:51:58] -rw-r--r-- 2 boinc boinc 592277112 Jan 15 07:04 ATLAS.root_0
[2026-01-15 07:51:58] -rw-r--r-- 2 boinc boinc    592411 Jan 15 07:04 input.tar.gz
[2026-01-15 07:51:58] -rw-r--r-- 2 boinc boinc     15847 Jan 15 07:04 start_atlas.sh
[2026-01-15 07:51:58] -rw------- 1 boinc boinc 151306817 Jan 15 07:50 HITS.pool.root.1
[2026-01-15 07:51:58] -rw------- 1 boinc boinc    686080 Jan 15 07:51 result.tar.gz
07:52:00 (1154651): run_atlas exited; CPU time 10184.596389
07:52:00 (1154651): called boinc_finish(0)

</stderr_txt>
]]>

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