Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:52:03 (1176971): wrapper (7.7.26015): starting
07:52:03 (1176971): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 07:52:03] Arguments: --nthreads 4
[2026-01-15 07:52:03] Threads: 4
[2026-01-15 07:52:03] Checking for CVMFS
[2026-01-15 07:52:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 07:52:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 07:52:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 07:52:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 07:52:03] 2.9.2.0 313005 1841 95376 155158 2 57 21642755 36864001 0 130560 0 2324104 99.993 71261 20745 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 07:52:03] CVMFS is ok
[2026-01-15 07:52:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 07:52:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 07:52:03] Further information can be found at the LHC@home message board.
[2026-01-15 07:52:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 07:52:03] Checking for apptainer binary...
[2026-01-15 07:52:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 07:52:03] Running /usr/bin/apptainer --version
[2026-01-15 07:52:03] apptainer version 1.4.1-1.1
[2026-01-15 07:52:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 07:52:03] thA334
[2026-01-15 07:52:03] apptainer works
[2026-01-15 07:52:03] Set ATHENA_PROC_NUMBER=4
[2026-01-15 07:52:03] Set ATHENA_CORE_NUMBER=4
[2026-01-15 07:52:03] Starting ATLAS job with PandaID=6969984834
[2026-01-15 07:52:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 08:39:20]  *** The last 200 lines of the pilot log: ***
[2026-01-15 08:39:20] 2026-01-15 07:38:32,906 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,906 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | job 6969984834 has completed (purged errors)
[2026-01-15 08:39:20] 2026-01-15 07:38:32,907 | INFO     | overall cleanup function is called
[2026-01-15 08:39:20] 2026-01-15 07:38:33,914 | INFO     | --- collectZombieJob: --- 10, [1187324]
[2026-01-15 08:39:20] 2026-01-15 07:38:33,914 | INFO     | zombie collector waiting for pid 1187324
[2026-01-15 08:39:20] 2026-01-15 07:38:33,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 08:39:20] 2026-01-15 07:38:33,914 | INFO     | collected zombie processes
[2026-01-15 08:39:20] 2026-01-15 07:38:33,914 | INFO     | will attempt to kill all subprocesses of pid=1187324
[2026-01-15 08:39:20] 2026-01-15 07:38:33,958 | INFO     | process IDs to be killed: [1187324] (in reverse order)
[2026-01-15 08:39:20] 2026-01-15 07:38:33,987 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 08:39:20] 2026-01-15 07:38:33,987 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 08:39:20] 2026-01-15 07:38:33,989 | INFO     | did not find any defunct processes belonging to 1187324
[2026-01-15 08:39:20] 2026-01-15 07:38:33,990 | INFO     | did not find any defunct processes belonging to 1187324
[2026-01-15 08:39:20] 2026-01-15 07:38:33,990 | INFO     | ready for new job
[2026-01-15 08:39:20] 2026-01-15 07:38:33,990 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 08:39:20] 2026-01-15 07:38:33,991 | INFO     | ***************************************
[2026-01-15 08:39:20] 2026-01-15 07:38:33,991 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 08:39:20] 2026-01-15 07:38:33,991 | INFO     | ***************************************
[2026-01-15 08:39:20] 2026-01-15 07:38:33,991 | INFO     | 
[2026-01-15 08:39:20] 2026-01-15 07:38:33,992 | INFO     | architecture information:
[2026-01-15 08:39:20] 2026-01-15 07:38:33,992 | INFO     | executing command: cat /etc/os-release
[2026-01-15 08:39:20] 2026-01-15 07:38:34,003 | INFO     | cat /etc/os-release:
[2026-01-15 08:39:20] NAME="CentOS Linux"
[2026-01-15 08:39:20] VERSION="7 (Core)"
[2026-01-15 08:39:20] ID="centos"
[2026-01-15 08:39:20] ID_LIKE="rhel fedora"
[2026-01-15 08:39:20] VERSION_ID="7"
[2026-01-15 08:39:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 08:39:20] ANSI_COLOR="0;31"
[2026-01-15 08:39:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 08:39:20] HOME_URL="https://www.centos.org/"
[2026-01-15 08:39:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 08:39:20] 
[2026-01-15 08:39:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 08:39:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 08:39:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 08:39:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 08:39:20] 
[2026-01-15 08:39:20] 2026-01-15 07:38:34,004 | INFO     | ***************************************
[2026-01-15 08:39:20] 2026-01-15 07:38:34,507 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 08:39:20] 2026-01-15 07:38:34,523 | INFO     | sufficient remaining disk space (237919797248 B)
[2026-01-15 08:39:20] 2026-01-15 07:38:34,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 08:39:20] 2026-01-15 07:38:34,523 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 08:39:20] 2026-01-15 07:38:34,523 | INFO     | update_server=False
[2026-01-15 08:39:20] 2026-01-15 07:38:34,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 08:39:20] 2026-01-15 07:38:34,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 08:39:20] 2026-01-15 07:38:34,523 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 08:39:20] 2026-01-15 07:38:34,524 | INFO     | aborting loop
[2026-01-15 08:39:20] 2026-01-15 07:38:34,582 | INFO     | all payload control threads have been joined
[2026-01-15 08:39:20] 2026-01-15 07:38:34,728 | INFO     | all data control threads have been joined
[2026-01-15 08:39:20] 2026-01-15 07:38:35,529 | INFO     | [job] retrieve thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:35,529 | INFO     | [job] queue monitor thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:35,529 | INFO     | [job] job monitor thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:35,587 | INFO     | [payload] control thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:35,591 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 08:39:20] 2026-01-15 07:38:35,734 | INFO     | [data] control thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:35,899 | INFO     | [payload] failed_post thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:36,106 | INFO     | all job control threads have been joined
[2026-01-15 08:39:20] 2026-01-15 07:38:36,241 | INFO     | [job] validate thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:36,286 | INFO     | [data] copytool_in thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:36,325 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:36,400 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:36,448 | INFO     | [payload] validate_post thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:36,678 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:37,071 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 08:39:20] 2026-01-15 07:38:37,112 | INFO     | [job] control thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:37,597 | INFO     | [data] copytool_out thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:41,078 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:38:44,662 | INFO     | job.realtimelogging is not enabled
[2026-01-15 08:39:20] 2026-01-15 07:38:45,667 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 08:39:20] 2026-01-15 07:39:04,535 | INFO     | PID=1180767 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 08:39:20] 2026-01-15 07:39:04,535 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 08:39:20] 2026-01-15 07:39:04,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 08:39:20] 2026-01-15 07:39:04,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 08:39:20] 2026-01-15 07:39:14,115 | INFO     | [monitor] cgroup control has ended
[2026-01-15 08:39:20] 2026-01-15 07:39:15,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140443307464512)>', '<ExcThread(monitor, started 140442494539520)>']
[2026-01-15 08:39:20] 2026-01-15 07:39:15,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 08:39:20] 2026-01-15 07:39:15,593 | INFO     | [monitor] control thread has ended
[2026-01-15 08:39:20] 2026-01-15 07:39:20,606 | INFO     | all workflow threads have been joined
[2026-01-15 08:39:20] 2026-01-15 07:39:20,606 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 08:39:20] 2026-01-15 07:39:20,606 | INFO     | traces error code: 0
[2026-01-15 08:39:20] 2026-01-15 07:39:20,606 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 08:39:20] 2026-01-15 07:39:20,673 [wrapper] ==== pilot stdout END ====
[2026-01-15 08:39:20] 2026-01-15 07:39:20,677 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 08:39:20] 2026-01-15 07:39:20,680 [wrapper] pilotpid: 1180767
[2026-01-15 08:39:20] 2026-01-15 07:39:20,684 [wrapper] Pilot exit status: 0
[2026-01-15 08:39:20] 2026-01-15 07:39:20,693 [wrapper] pandaids: 6969984834
[2026-01-15 08:39:20] 2026-01-15 07:39:20,713 [wrapper] cleanup supervisor_pilot 1196708 1180768
[2026-01-15 08:39:20] 2026-01-15 07:39:20,716 [wrapper] Test setup, not cleaning
[2026-01-15 08:39:20] 2026-01-15 07:39:20,720 [wrapper] apfmon messages muted
[2026-01-15 08:39:20] 2026-01-15 07:39:20,723 [wrapper] ==== wrapper stdout END ====
[2026-01-15 08:39:20] 2026-01-15 07:39:20,726 [wrapper] ==== wrapper stderr END ====
[2026-01-15 08:39:20]  *** Error codes and diagnostics ***
[2026-01-15 08:39:20]     "exeErrorCode": 0,
[2026-01-15 08:39:20]     "exeErrorDiag": "",
[2026-01-15 08:39:20]     "pilotErrorCode": 0,
[2026-01-15 08:39:20]     "pilotErrorDiag": "",
[2026-01-15 08:39:20]  *** Listing of results directory ***
[2026-01-15 08:39:20] total 729420
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc    579449 Jan 15 02:12 pilot3.tar.gz
[2026-01-15 08:39:20] -rwx------ 1 boinc boinc     36322 Jan 15 02:16 runpilot2-wrapper.sh
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc      5112 Jan 15 02:19 queuedata.json
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc       100 Jan 15 07:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 08:39:20] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 07:52 run_atlas
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc       105 Jan 15 07:52 job.xml
[2026-01-15 08:39:20] -rw-r--r-- 2 boinc boinc 592277112 Jan 15 07:52 EVNT.32794306._001592.pool.root.1
[2026-01-15 08:39:20] -rw-r--r-- 2 boinc boinc    592410 Jan 15 07:52 input.tar.gz
[2026-01-15 08:39:20] -rw-r--r-- 2 boinc boinc     15847 Jan 15 07:52 start_atlas.sh
[2026-01-15 08:39:20] drwxrwx--x 2 boinc boinc      4096 Jan 15 07:52 shared
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc         0 Jan 15 07:52 boinc_setup_complete
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc      6369 Jan 15 07:52 init_data.xml
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc         0 Jan 15 07:52 boinc_lockfile
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc      2508 Jan 15 07:52 pandaJob.out
[2026-01-15 08:39:20] -rw------- 1 boinc boinc    999472 Jan 15 07:52 agis_schedconf.cvmfs.json
[2026-01-15 08:39:20] -rw------- 1 boinc boinc   1516246 Jan 15 07:52 agis_ddmendpoints.agis.ALL.json
[2026-01-15 08:39:20] drwx------ 5 boinc boinc      4096 Jan 15 07:52 pilot3
[2026-01-15 08:39:20] -rw------- 1 boinc boinc 149417891 Jan 15 08:38 HITS.48215263._039931.pool.root.1
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc       531 Jan 15 08:38 boinc_task_state.xml
[2026-01-15 08:39:20] -rw------- 1 boinc boinc      1024 Jan 15 08:38 memory_monitor_summary.json
[2026-01-15 08:39:20] -rw------- 1 boinc boinc        95 Jan 15 08:38 pilot_heartbeat.json
[2026-01-15 08:39:20] -rw------- 1 boinc boinc    228934 Jan 15 08:38 log.48215263._039931.job.log.tgz.1
[2026-01-15 08:39:20] -rw------- 1 boinc boinc      7765 Jan 15 08:38 heartbeat.json
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc        27 Jan 15 08:38 wrapper_checkpoint.txt
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc      8192 Jan 15 08:38 boinc_mmap_file
[2026-01-15 08:39:20] -rw------- 1 boinc boinc      4824 Jan 15 08:39 pilotlog.txt
[2026-01-15 08:39:20] -rw------- 1 boinc boinc    432579 Jan 15 08:39 log.48215263._039931.job.log.1
[2026-01-15 08:39:20] -rw------- 1 boinc boinc       357 Jan 15 08:39 output.list
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc       620 Jan 15 08:39 runtime_log
[2026-01-15 08:39:20] -rw------- 1 boinc boinc    675840 Jan 15 08:39 result.tar.gz
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc      8897 Jan 15 08:39 runtime_log.err
[2026-01-15 08:39:20] -rw------- 1 boinc boinc       657 Jan 15 08:39 G2EMDmN9Q08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlNnKDmgktaQm.diag
[2026-01-15 08:39:20] -rw-r--r-- 1 boinc boinc     12736 Jan 15 08:39 stderr.txt
[2026-01-15 08:39:20] HITS file was successfully produced:
[2026-01-15 08:39:20] -rw------- 1 boinc boinc 149417891 Jan 15 08:38 shared/HITS.pool.root.1
[2026-01-15 08:39:20]  *** Contents of shared directory: ***
[2026-01-15 08:39:20] total 725576
[2026-01-15 08:39:20] -rw-r--r-- 2 boinc boinc 592277112 Jan 15 07:52 ATLAS.root_0
[2026-01-15 08:39:20] -rw-r--r-- 2 boinc boinc    592410 Jan 15 07:52 input.tar.gz
[2026-01-15 08:39:20] -rw-r--r-- 2 boinc boinc     15847 Jan 15 07:52 start_atlas.sh
[2026-01-15 08:39:20] -rw------- 1 boinc boinc 149417891 Jan 15 08:38 HITS.pool.root.1
[2026-01-15 08:39:20] -rw------- 1 boinc boinc    675840 Jan 15 08:39 result.tar.gz
08:39:22 (1176971): run_atlas exited; CPU time 10096.844544
08:39:22 (1176971): called boinc_finish(0)

</stderr_txt>
]]>

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