Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:25:23 (1783119): wrapper (7.7.26015): starting
06:25:23 (1783119): wrapper: running run_atlas (--nthreads 3)
[2026-01-15 06:25:23] Arguments: --nthreads 3
[2026-01-15 06:25:23] Threads: 3
[2026-01-15 06:25:23] Checking for CVMFS
[2026-01-15 06:25:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 06:25:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 06:25:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 06:25:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 06:25:23] 2.9.2.0 1053361 1788 84780 155157 3 57 22896147 36864001 0 130560 0 1927698 99.992 70548 22575 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 06:25:23] CVMFS is ok
[2026-01-15 06:25:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 06:25:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 06:25:23] Further information can be found at the LHC@home message board.
[2026-01-15 06:25:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 06:25:23] Checking for apptainer binary...
[2026-01-15 06:25:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 06:25:23] Running /usr/bin/apptainer --version
[2026-01-15 06:25:23] apptainer version 1.4.1-1.1
[2026-01-15 06:25:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 06:25:23] magicA246a
[2026-01-15 06:25:23] apptainer works
[2026-01-15 06:25:23] Set ATHENA_PROC_NUMBER=3
[2026-01-15 06:25:23] Set ATHENA_CORE_NUMBER=3
[2026-01-15 06:25:23] Starting ATLAS job with PandaID=6970066272
[2026-01-15 06:25:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 07:19:38]  *** The last 200 lines of the pilot log: ***
[2026-01-15 07:19:38] 2026-01-15 06:19:06,628 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 07:19:38] 2026-01-15 06:19:06,628 | INFO     | job 6970066272 has completed (purged errors)
[2026-01-15 07:19:38] 2026-01-15 06:19:06,628 | INFO     | overall cleanup function is called
[2026-01-15 07:19:38] 2026-01-15 06:19:07,634 | INFO     | --- collectZombieJob: --- 10, [1793279]
[2026-01-15 07:19:38] 2026-01-15 06:19:07,634 | INFO     | zombie collector waiting for pid 1793279
[2026-01-15 07:19:38] 2026-01-15 06:19:07,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 07:19:38] 2026-01-15 06:19:07,634 | INFO     | collected zombie processes
[2026-01-15 07:19:38] 2026-01-15 06:19:07,634 | INFO     | will attempt to kill all subprocesses of pid=1793279
[2026-01-15 07:19:38] 2026-01-15 06:19:07,691 | INFO     | process IDs to be killed: [1793279] (in reverse order)
[2026-01-15 07:19:38] 2026-01-15 06:19:07,720 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 07:19:38] 2026-01-15 06:19:07,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 07:19:38] 2026-01-15 06:19:07,723 | INFO     | did not find any defunct processes belonging to 1793279
[2026-01-15 07:19:38] 2026-01-15 06:19:07,724 | INFO     | did not find any defunct processes belonging to 1793279
[2026-01-15 07:19:38] 2026-01-15 06:19:07,724 | INFO     | ready for new job
[2026-01-15 07:19:38] 2026-01-15 06:19:07,724 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 07:19:38] 2026-01-15 06:19:07,725 | INFO     | ***************************************
[2026-01-15 07:19:38] 2026-01-15 06:19:07,725 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 07:19:38] 2026-01-15 06:19:07,725 | INFO     | ***************************************
[2026-01-15 07:19:38] 2026-01-15 06:19:07,725 | INFO     | 
[2026-01-15 07:19:38] 2026-01-15 06:19:07,725 | INFO     | architecture information:
[2026-01-15 07:19:38] 2026-01-15 06:19:07,726 | INFO     | executing command: cat /etc/os-release
[2026-01-15 07:19:38] 2026-01-15 06:19:07,734 | INFO     | cat /etc/os-release:
[2026-01-15 07:19:38] NAME="CentOS Linux"
[2026-01-15 07:19:38] VERSION="7 (Core)"
[2026-01-15 07:19:38] ID="centos"
[2026-01-15 07:19:38] ID_LIKE="rhel fedora"
[2026-01-15 07:19:38] VERSION_ID="7"
[2026-01-15 07:19:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 07:19:38] ANSI_COLOR="0;31"
[2026-01-15 07:19:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 07:19:38] HOME_URL="https://www.centos.org/"
[2026-01-15 07:19:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 07:19:38] 
[2026-01-15 07:19:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 07:19:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 07:19:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 07:19:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 07:19:38] 
[2026-01-15 07:19:38] 2026-01-15 06:19:07,734 | INFO     | ***************************************
[2026-01-15 07:19:38] 2026-01-15 06:19:08,237 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 07:19:38] 2026-01-15 06:19:08,249 | INFO     | sufficient remaining disk space (280868421632 B)
[2026-01-15 07:19:38] 2026-01-15 06:19:08,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | INFO     | update_server=False
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 07:19:38] 2026-01-15 06:19:08,250 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 07:19:38] 2026-01-15 06:19:08,299 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 07:19:38] 2026-01-15 06:19:08,299 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 07:19:38] 2026-01-15 06:19:08,299 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:19:38] 2026-01-15 06:19:08,299 | INFO     | will abort loop
[2026-01-15 07:19:38] 2026-01-15 06:19:09,021 | INFO     | all data control threads have been joined
[2026-01-15 07:19:38] 2026-01-15 06:19:09,255 | INFO     | [job] retrieve thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:09,256 | INFO     | [job] queue monitor thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:09,305 | INFO     | [job] job monitor thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:09,325 | INFO     | all payload control threads have been joined
[2026-01-15 07:19:38] 2026-01-15 06:19:09,365 | INFO     | all job control threads have been joined
[2026-01-15 07:19:38] 2026-01-15 06:19:09,711 | INFO     | [payload] validate_post thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,022 | INFO     | [data] control thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,042 | INFO     | [data] copytool_in thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,256 | INFO     | [data] copytool_out thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,330 | INFO     | [payload] control thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,371 | INFO     | [job] control thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,446 | INFO     | [job] validate thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,449 | INFO     | [payload] failed_post thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,537 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,583 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,609 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:10,610 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:12,255 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 07:19:38] 2026-01-15 06:19:32,421 | INFO     | [monitor] cgroup control has ended
[2026-01-15 07:19:38] 2026-01-15 06:19:33,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139942736877376)>', '<ExcThread(monitor, started 139942114096896)>']
[2026-01-15 07:19:38] 2026-01-15 06:19:33,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 07:19:38] 2026-01-15 06:19:33,361 | INFO     | [monitor] control thread has ended
[2026-01-15 07:19:38] 2026-01-15 06:19:38,073 | INFO     | all workflow threads have been joined
[2026-01-15 07:19:38] 2026-01-15 06:19:38,073 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 07:19:38] 2026-01-15 06:19:38,073 | INFO     | traces error code: 0
[2026-01-15 07:19:38] 2026-01-15 06:19:38,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 07:19:38] 2026-01-15 06:19:38,125 [wrapper] ==== pilot stdout END ====
[2026-01-15 07:19:38] 2026-01-15 06:19:38,128 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 07:19:38] 2026-01-15 06:19:38,130 [wrapper] pilotpid: 1786838
[2026-01-15 07:19:38] 2026-01-15 06:19:38,133 [wrapper] Pilot exit status: 0
[2026-01-15 07:19:38] 2026-01-15 06:19:38,140 [wrapper] pandaids: 6970066272
[2026-01-15 07:19:38] 2026-01-15 06:19:38,159 [wrapper] cleanup supervisor_pilot 1803116 1786839
[2026-01-15 07:19:38] 2026-01-15 06:19:38,162 [wrapper] Test setup, not cleaning
[2026-01-15 07:19:38] 2026-01-15 06:19:38,164 [wrapper] apfmon messages muted
[2026-01-15 07:19:38] 2026-01-15 06:19:38,166 [wrapper] ==== wrapper stdout END ====
[2026-01-15 07:19:38] 2026-01-15 06:19:38,169 [wrapper] ==== wrapper stderr END ====
[2026-01-15 07:19:38]  *** Error codes and diagnostics ***
[2026-01-15 07:19:38]     "exeErrorCode": 0,
[2026-01-15 07:19:38]     "exeErrorDiag": "",
[2026-01-15 07:19:38]     "pilotErrorCode": 0,
[2026-01-15 07:19:38]     "pilotErrorDiag": "",
[2026-01-15 07:19:38]  *** Listing of results directory ***
[2026-01-15 07:19:38] total 732888
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc    579449 Jan 15 02:12 pilot3.tar.gz
[2026-01-15 07:19:38] -rwx------ 1 boinc boinc     36322 Jan 15 02:13 runpilot2-wrapper.sh
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc      5112 Jan 15 02:15 queuedata.json
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc       100 Jan 15 06:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 07:19:38] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 06:25 run_atlas
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc       105 Jan 15 06:25 job.xml
[2026-01-15 07:19:38] -rw-r--r-- 2 boinc boinc 596777040 Jan 15 06:25 EVNT.32794306._001637.pool.root.1
[2026-01-15 07:19:38] drwxrwx--x 2 boinc boinc      4096 Jan 15 06:25 shared
[2026-01-15 07:19:38] -rw-r--r-- 2 boinc boinc    592402 Jan 15 06:25 input.tar.gz
[2026-01-15 07:19:38] -rw-r--r-- 2 boinc boinc     15847 Jan 15 06:25 start_atlas.sh
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc         0 Jan 15 06:25 boinc_setup_complete
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc      6447 Jan 15 06:25 init_data.xml
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc         0 Jan 15 06:25 boinc_lockfile
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc      2508 Jan 15 06:25 pandaJob.out
[2026-01-15 07:19:38] -rw------- 1 boinc boinc    999472 Jan 15 06:25 agis_schedconf.cvmfs.json
[2026-01-15 07:19:38] -rw------- 1 boinc boinc   1516246 Jan 15 06:25 agis_ddmendpoints.agis.ALL.json
[2026-01-15 07:19:38] drwx------ 5 boinc boinc      4096 Jan 15 06:25 pilot3
[2026-01-15 07:19:38] -rw------- 1 boinc boinc 148325081 Jan 15 07:18 HITS.48215263._041077.pool.root.1
[2026-01-15 07:19:38] -rw------- 1 boinc boinc        95 Jan 15 07:18 pilot_heartbeat.json
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc       529 Jan 15 07:18 boinc_task_state.xml
[2026-01-15 07:19:38] -rw------- 1 boinc boinc      1018 Jan 15 07:18 memory_monitor_summary.json
[2026-01-15 07:19:38] -rw------- 1 boinc boinc    238822 Jan 15 07:18 log.48215263._041077.job.log.tgz.1
[2026-01-15 07:19:38] -rw------- 1 boinc boinc      7745 Jan 15 07:19 heartbeat.json
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc        26 Jan 15 07:19 wrapper_checkpoint.txt
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc      8192 Jan 15 07:19 boinc_mmap_file
[2026-01-15 07:19:38] -rw------- 1 boinc boinc      4742 Jan 15 07:19 pilotlog.txt
[2026-01-15 07:19:38] -rw------- 1 boinc boinc    491057 Jan 15 07:19 log.48215263._041077.job.log.1
[2026-01-15 07:19:38] -rw------- 1 boinc boinc       357 Jan 15 07:19 output.list
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc       620 Jan 15 07:19 runtime_log
[2026-01-15 07:19:38] -rw------- 1 boinc boinc    747520 Jan 15 07:19 result.tar.gz
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc      8917 Jan 15 07:19 runtime_log.err
[2026-01-15 07:19:38] -rw------- 1 boinc boinc       660 Jan 15 07:19 NI8LDm26Q08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWKnKDm2r7ecn.diag
[2026-01-15 07:19:38] -rw-r--r-- 1 boinc boinc     11064 Jan 15 07:19 stderr.txt
[2026-01-15 07:19:38] HITS file was successfully produced:
[2026-01-15 07:19:38] -rw------- 1 boinc boinc 148325081 Jan 15 07:18 shared/HITS.pool.root.1
[2026-01-15 07:19:38]  *** Contents of shared directory: ***
[2026-01-15 07:19:38] total 728980
[2026-01-15 07:19:38] -rw-r--r-- 2 boinc boinc 596777040 Jan 15 06:25 ATLAS.root_0
[2026-01-15 07:19:38] -rw-r--r-- 2 boinc boinc    592402 Jan 15 06:25 input.tar.gz
[2026-01-15 07:19:38] -rw-r--r-- 2 boinc boinc     15847 Jan 15 06:25 start_atlas.sh
[2026-01-15 07:19:38] -rw------- 1 boinc boinc 148325081 Jan 15 07:18 HITS.pool.root.1
[2026-01-15 07:19:38] -rw------- 1 boinc boinc    747520 Jan 15 07:19 result.tar.gz
07:19:39 (1783119): run_atlas exited; CPU time 9011.324803
07:19:39 (1783119): called boinc_finish(0)

</stderr_txt>
]]>

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