Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:20:01 (1805611): wrapper (7.7.26015): starting
07:20:01 (1805611): wrapper: running run_atlas (--nthreads 3)
[2026-01-15 07:20:01] Arguments: --nthreads 3
[2026-01-15 07:20:01] Threads: 3
[2026-01-15 07:20:01] Checking for CVMFS
[2026-01-15 07:20:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 07:20:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 07:20:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 07:20:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 07:20:01] 2.9.2.0 1053361 1843 84996 155158 0 56 22901439 36864001 0 130560 0 1987923 99.992 71892 22664 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 07:20:01] CVMFS is ok
[2026-01-15 07:20:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 07:20:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 07:20:01] Further information can be found at the LHC@home message board.
[2026-01-15 07:20:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 07:20:01] Checking for apptainer binary...
[2026-01-15 07:20:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 07:20:01] Running /usr/bin/apptainer --version
[2026-01-15 07:20:01] apptainer version 1.4.1-1.1
[2026-01-15 07:20:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 07:20:01] magicA246a
[2026-01-15 07:20:01] apptainer works
[2026-01-15 07:20:01] Set ATHENA_PROC_NUMBER=3
[2026-01-15 07:20:01] Set ATHENA_CORE_NUMBER=3
[2026-01-15 07:20:01] Starting ATLAS job with PandaID=6970066206
[2026-01-15 07:20:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 08:15:15]  *** The last 200 lines of the pilot log: ***
[2026-01-15 08:15:15] 2026-01-15 07:14:41,370 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 08:15:15] 2026-01-15 07:14:41,370 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 08:15:15] 2026-01-15 07:14:41,370 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 08:15:15] 2026-01-15 07:14:41,370 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 08:15:15] 2026-01-15 07:14:41,370 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 08:15:15] 2026-01-15 07:14:41,370 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 08:15:15] 2026-01-15 07:14:41,370 | INFO     | job 6970066206 has completed (purged errors)
[2026-01-15 08:15:15] 2026-01-15 07:14:41,370 | INFO     | overall cleanup function is called
[2026-01-15 08:15:15] 2026-01-15 07:14:41,489 | INFO     | PID=1809335 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 08:15:15] 2026-01-15 07:14:42,377 | INFO     | --- collectZombieJob: --- 10, [1815784]
[2026-01-15 08:15:15] 2026-01-15 07:14:42,377 | INFO     | zombie collector waiting for pid 1815784
[2026-01-15 08:15:15] 2026-01-15 07:14:42,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 08:15:15] 2026-01-15 07:14:42,377 | INFO     | collected zombie processes
[2026-01-15 08:15:15] 2026-01-15 07:14:42,377 | INFO     | will attempt to kill all subprocesses of pid=1815784
[2026-01-15 08:15:15] 2026-01-15 07:14:42,433 | INFO     | process IDs to be killed: [1815784] (in reverse order)
[2026-01-15 08:15:15] 2026-01-15 07:14:42,461 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 08:15:15] 2026-01-15 07:14:42,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 08:15:15] 2026-01-15 07:14:42,463 | INFO     | did not find any defunct processes belonging to 1815784
[2026-01-15 08:15:15] 2026-01-15 07:14:42,464 | INFO     | did not find any defunct processes belonging to 1815784
[2026-01-15 08:15:15] 2026-01-15 07:14:42,464 | INFO     | ready for new job
[2026-01-15 08:15:15] 2026-01-15 07:14:42,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 08:15:15] 2026-01-15 07:14:42,465 | INFO     | ***************************************
[2026-01-15 08:15:15] 2026-01-15 07:14:42,465 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 08:15:15] 2026-01-15 07:14:42,465 | INFO     | ***************************************
[2026-01-15 08:15:15] 2026-01-15 07:14:42,465 | INFO     | 
[2026-01-15 08:15:15] 2026-01-15 07:14:42,465 | INFO     | architecture information:
[2026-01-15 08:15:15] 2026-01-15 07:14:42,465 | INFO     | executing command: cat /etc/os-release
[2026-01-15 08:15:15] 2026-01-15 07:14:42,474 | INFO     | cat /etc/os-release:
[2026-01-15 08:15:15] NAME="CentOS Linux"
[2026-01-15 08:15:15] VERSION="7 (Core)"
[2026-01-15 08:15:15] ID="centos"
[2026-01-15 08:15:15] ID_LIKE="rhel fedora"
[2026-01-15 08:15:15] VERSION_ID="7"
[2026-01-15 08:15:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 08:15:15] ANSI_COLOR="0;31"
[2026-01-15 08:15:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 08:15:15] HOME_URL="https://www.centos.org/"
[2026-01-15 08:15:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 08:15:15] 
[2026-01-15 08:15:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 08:15:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 08:15:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 08:15:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 08:15:15] 
[2026-01-15 08:15:15] 2026-01-15 07:14:42,475 | INFO     | ***************************************
[2026-01-15 08:15:15] 2026-01-15 07:14:42,978 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 08:15:15] 2026-01-15 07:14:42,990 | INFO     | sufficient remaining disk space (280855838720 B)
[2026-01-15 08:15:15] 2026-01-15 07:14:42,990 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 08:15:15] 2026-01-15 07:14:42,991 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 08:15:15] 2026-01-15 07:14:42,991 | INFO     | update_server=False
[2026-01-15 08:15:15] 2026-01-15 07:14:42,991 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 08:15:15] 2026-01-15 07:14:42,991 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 08:15:15] 2026-01-15 07:14:42,991 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 08:15:15] 2026-01-15 07:14:42,991 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 08:15:15] 2026-01-15 07:14:42,991 | INFO     | aborting loop
[2026-01-15 08:15:15] 2026-01-15 07:14:43,085 | INFO     | all data control threads have been joined
[2026-01-15 08:15:15] 2026-01-15 07:14:43,395 | INFO     | all job control threads have been joined
[2026-01-15 08:15:15] 2026-01-15 07:14:43,994 | INFO     | [job] queue monitor thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:43,996 | INFO     | [job] retrieve thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:43,996 | INFO     | [job] job monitor thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:44,006 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:44,091 | INFO     | [data] control thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:44,378 | INFO     | all payload control threads have been joined
[2026-01-15 08:15:15] 2026-01-15 07:14:44,398 | INFO     | [payload] failed_post thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:44,400 | INFO     | [job] control thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:44,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 08:15:15] 2026-01-15 07:14:44,480 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:44,932 | INFO     | [payload] validate_post thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:44,948 | INFO     | [data] copytool_in thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:44,997 | INFO     | [data] copytool_out thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:45,317 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:45,377 | INFO     | [job] validate thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:45,384 | INFO     | [payload] control thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:45,474 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:14:48,426 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 08:15:15] 2026-01-15 07:15:09,905 | INFO     | [monitor] cgroup control has ended
[2026-01-15 08:15:15] 2026-01-15 07:15:10,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140313130587968)>', '<ExcThread(monitor, started 140312269805312)>']
[2026-01-15 08:15:15] 2026-01-15 07:15:13,593 | INFO     | PID=1809335 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 08:15:15] 2026-01-15 07:15:13,593 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 08:15:15] 2026-01-15 07:15:13,593 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 08:15:15] 2026-01-15 07:15:13,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 08:15:15] 2026-01-15 07:15:13,593 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 08:15:15] 2026-01-15 07:15:13,593 | INFO     | [monitor] control thread has ended
[2026-01-15 08:15:15] 2026-01-15 07:15:15,520 | INFO     | all workflow threads have been joined
[2026-01-15 08:15:15] 2026-01-15 07:15:15,520 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 08:15:15] 2026-01-15 07:15:15,521 | INFO     | traces error code: 0
[2026-01-15 08:15:15] 2026-01-15 07:15:15,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 08:15:15] 2026-01-15 07:15:15,575 [wrapper] ==== pilot stdout END ====
[2026-01-15 08:15:15] 2026-01-15 07:15:15,578 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 08:15:15] 2026-01-15 07:15:15,580 [wrapper] pilotpid: 1809335
[2026-01-15 08:15:15] 2026-01-15 07:15:15,582 [wrapper] Pilot exit status: 0
[2026-01-15 08:15:15] 2026-01-15 07:15:15,590 [wrapper] pandaids: 6970066206
[2026-01-15 08:15:15] 2026-01-15 07:15:15,609 [wrapper] cleanup supervisor_pilot 1825556 1809336
[2026-01-15 08:15:15] 2026-01-15 07:15:15,611 [wrapper] Test setup, not cleaning
[2026-01-15 08:15:15] 2026-01-15 07:15:15,614 [wrapper] apfmon messages muted
[2026-01-15 08:15:15] 2026-01-15 07:15:15,616 [wrapper] ==== wrapper stdout END ====
[2026-01-15 08:15:15] 2026-01-15 07:15:15,618 [wrapper] ==== wrapper stderr END ====
[2026-01-15 08:15:15]  *** Error codes and diagnostics ***
[2026-01-15 08:15:15]     "exeErrorCode": 0,
[2026-01-15 08:15:15]     "exeErrorDiag": "",
[2026-01-15 08:15:15]     "pilotErrorCode": 0,
[2026-01-15 08:15:15]     "pilotErrorDiag": "",
[2026-01-15 08:15:15]  *** Listing of results directory ***
[2026-01-15 08:15:15] total 741656
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc    579449 Jan 15 02:12 pilot3.tar.gz
[2026-01-15 08:15:15] -rwx------ 1 boinc boinc     36322 Jan 15 02:13 runpilot2-wrapper.sh
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc      5112 Jan 15 02:15 queuedata.json
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc       100 Jan 15 07:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 08:15:15] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 07:20 run_atlas
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc       105 Jan 15 07:20 job.xml
[2026-01-15 08:15:15] -rw-r--r-- 2 boinc boinc 600937585 Jan 15 07:20 EVNT.32794306._001635.pool.root.1
[2026-01-15 08:15:15] -rw-r--r-- 2 boinc boinc    592405 Jan 15 07:20 input.tar.gz
[2026-01-15 08:15:15] -rw-r--r-- 2 boinc boinc     15847 Jan 15 07:20 start_atlas.sh
[2026-01-15 08:15:15] drwxrwx--x 2 boinc boinc      4096 Jan 15 07:20 shared
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc         0 Jan 15 07:20 boinc_setup_complete
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc      6447 Jan 15 07:20 init_data.xml
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc         0 Jan 15 07:20 boinc_lockfile
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc      2508 Jan 15 07:20 pandaJob.out
[2026-01-15 08:15:15] -rw------- 1 boinc boinc    999472 Jan 15 07:20 agis_schedconf.cvmfs.json
[2026-01-15 08:15:15] -rw------- 1 boinc boinc   1516246 Jan 15 07:20 agis_ddmendpoints.agis.ALL.json
[2026-01-15 08:15:15] drwx------ 5 boinc boinc      4096 Jan 15 07:20 pilot3
[2026-01-15 08:15:15] -rw------- 1 boinc boinc 153169859 Jan 15 08:14 HITS.48215263._041011.pool.root.1
[2026-01-15 08:15:15] -rw------- 1 boinc boinc        95 Jan 15 08:14 pilot_heartbeat.json
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc       529 Jan 15 08:14 boinc_task_state.xml
[2026-01-15 08:15:15] -rw------- 1 boinc boinc      1008 Jan 15 08:14 memory_monitor_summary.json
[2026-01-15 08:15:15] -rw------- 1 boinc boinc    220113 Jan 15 08:14 log.48215263._041011.job.log.tgz.1
[2026-01-15 08:15:15] -rw------- 1 boinc boinc      7741 Jan 15 08:14 heartbeat.json
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc      8192 Jan 15 08:15 boinc_mmap_file
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc        26 Jan 15 08:15 wrapper_checkpoint.txt
[2026-01-15 08:15:15] -rw------- 1 boinc boinc      4752 Jan 15 08:15 pilotlog.txt
[2026-01-15 08:15:15] -rw------- 1 boinc boinc    499310 Jan 15 08:15 log.48215263._041011.job.log.1
[2026-01-15 08:15:15] -rw------- 1 boinc boinc       357 Jan 15 08:15 output.list
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc       620 Jan 15 08:15 runtime_log
[2026-01-15 08:15:15] -rw------- 1 boinc boinc    737280 Jan 15 08:15 result.tar.gz
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc      8917 Jan 15 08:15 runtime_log.err
[2026-01-15 08:15:15] -rw------- 1 boinc boinc       660 Jan 15 08:15 ZE1KDm26Q08n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3JnKDmszSLRm.diag
[2026-01-15 08:15:15] -rw-r--r-- 1 boinc boinc     11645 Jan 15 08:15 stderr.txt
[2026-01-15 08:15:15] HITS file was successfully produced:
[2026-01-15 08:15:15] -rw------- 1 boinc boinc 153169859 Jan 15 08:14 shared/HITS.pool.root.1
[2026-01-15 08:15:15]  *** Contents of shared directory: ***
[2026-01-15 08:15:15] total 737760
[2026-01-15 08:15:15] -rw-r--r-- 2 boinc boinc 600937585 Jan 15 07:20 ATLAS.root_0
[2026-01-15 08:15:15] -rw-r--r-- 2 boinc boinc    592405 Jan 15 07:20 input.tar.gz
[2026-01-15 08:15:15] -rw-r--r-- 2 boinc boinc     15847 Jan 15 07:20 start_atlas.sh
[2026-01-15 08:15:15] -rw------- 1 boinc boinc 153169859 Jan 15 08:14 HITS.pool.root.1
[2026-01-15 08:15:15] -rw------- 1 boinc boinc    737280 Jan 15 08:15 result.tar.gz
08:15:16 (1805611): run_atlas exited; CPU time 9202.004507
08:15:16 (1805611): called boinc_finish(0)

</stderr_txt>
]]>

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