Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:17:06 (15848): wrapper (7.7.26015): starting
23:17:06 (15848): wrapper: running run_atlas (--nthreads 8)
[2026-01-14 23:17:06] Arguments: --nthreads 8
[2026-01-14 23:17:06] Threads: 8
[2026-01-14 23:17:06] Checking for CVMFS
[2026-01-14 23:17:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 23:17:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 23:17:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 23:17:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 23:17:06] 2.11.2.0 2827 114587 83308 155154 0 59 18921944 20275200 1 130560 0 23612962 99.749 7810370 30055 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-14 23:17:06] CVMFS is ok
[2026-01-14 23:17:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 23:17:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 23:17:06] Further information can be found at the LHC@home message board.
[2026-01-14 23:17:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 23:17:06] Checking for apptainer binary...
[2026-01-14 23:17:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 23:17:06] Running /usr/bin/apptainer --version
[2026-01-14 23:17:06] apptainer version 1.3.2-1.el7
[2026-01-14 23:17:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 23:17:08] c-204-30.aglt2.org
[2026-01-14 23:17:08] apptainer works
[2026-01-14 23:17:08] Set ATHENA_PROC_NUMBER=8
[2026-01-14 23:17:08] Set ATHENA_CORE_NUMBER=8
[2026-01-14 23:17:08] Starting ATLAS job with PandaID=6970065286
[2026-01-14 23:17:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 00:39:52]  *** The last 200 lines of the pilot log: ***
[2026-01-15 00:39:52]  replicas=None
[2026-01-15 00:39:52]  scope=mc23_13p6TeV
[2026-01-15 00:39:52]  status=None
[2026-01-15 00:39:52]  status_code=0
[2026-01-15 00:39:52]  storage_token=
[2026-01-15 00:39:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6970065286/log.48215263._040620.job.log.tgz.1
[2026-01-15 00:39:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/fd/log.48215263._040620.job.log.tgz.1
[2026-01-15 00:39:52]  workdir=None
[2026-01-15 00:39:52] ]
[2026-01-15 00:39:52] 2026-01-15 05:39:10,958 | INFO     | transferring file log.48215263._040620.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6970065286/log.48215263._040620.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-15 00:39:52] 2026-01-15 05:39:10,958 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6970065286/log.48215263._040620.job.log.tgz.1 /tmp/boinchome/slots/0/log.48215263._040620.job
[2026-01-15 00:39:52] 2026-01-15 05:39:10,985 | INFO     | adding to output.list: log.48215263._040620.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/fd/log.48215263._040620.job.log.tg
[2026-01-15 00:39:52] 2026-01-15 05:39:10,987 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-15 00:39:52] 2026-01-15 05:39:10,987 | INFO     | summary of transferred files:
[2026-01-15 00:39:52] 2026-01-15 05:39:10,987 | INFO     |  -- lfn=log.48215263._040620.job.log.tgz.1, status_code=0, status=transferred
[2026-01-15 00:39:52] 2026-01-15 05:39:10,987 | INFO     | stage-out finished correctly
[2026-01-15 00:39:52] 2026-01-15 05:39:11,141 | INFO     | monitor loop #363: job 0:6970065286 is in state 'stageout'
[2026-01-15 00:39:52] 2026-01-15 05:39:11,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 00:39:52] 2026-01-15 05:39:12,022 | INFO     | PID=19526 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 00:39:52] 2026-01-15 05:39:12,187 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-15 00:39:52] 2026-01-15 05:39:12,273 | INFO     | job 6970065286 has state=finished
[2026-01-15 00:39:52] 2026-01-15 05:39:12,273 | INFO     | preparing for final server update for job 6970065286 in state='finished'
[2026-01-15 00:39:52] 2026-01-15 05:39:12,274 | INFO     | this job has now completed (state=finished)
[2026-01-15 00:39:52] 2026-01-15 05:39:12,274 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-15 00:39:52] 2026-01-15 05:39:12,274 | INFO     | log transfer has been attempted: DONE
[2026-01-15 00:39:52] 2026-01-15 05:39:12,275 | INFO     | job 6970065286 has finished - writing final server update
[2026-01-15 00:39:52] 2026-01-15 05:39:12,275 | INFO     | total number of processed events: 400 (read)
[2026-01-15 00:39:52] 2026-01-15 05:39:12,276 | INFO     | executing command: lscpu
[2026-01-15 00:39:52] 2026-01-15 05:39:12,303 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-15 00:39:52] 2026-01-15 05:39:13,023 | INFO     | time since job start (4906s) is within the limit (349056.0s)
[2026-01-15 00:39:52] 2026-01-15 05:39:13,898 | INFO     | monitor loop #364: job 0:6970065286 is in state 'finished'
[2026-01-15 00:39:52] 2026-01-15 05:39:13,899 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 00:39:52] 2026-01-15 05:39:15,029 | INFO     | time since job start (4908s) is within the limit (349056.0s)
[2026-01-15 00:39:52] 2026-01-15 05:39:16,401 | INFO     | monitor loop #365: job 0:6970065286 is in state 'finished'
[2026-01-15 00:39:52] 2026-01-15 05:39:16,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 00:39:52] 2026-01-15 05:39:17,035 | INFO     | time since job start (4910s) is within the limit (349056.0s)
[2026-01-15 00:39:52] 2026-01-15 05:39:19,030 | INFO     | monitor loop #366: job 0:6970065286 is in state 'finished'
[2026-01-15 00:39:52] 2026-01-15 05:39:19,031 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 00:39:52] 2026-01-15 05:39:19,040 | INFO     | time since job start (4912s) is within the limit (349056.0s)
[2026-01-15 00:39:52] 2026-01-15 05:39:20,494 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-15 00:39:52] 2026-01-15 05:39:20,497 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2026-01-15 00:39:52] 2026-01-15 05:39:20,500 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6970065286/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 00:39:52] 2026-01-15 05:39:20,501 | INFO     | extracted standard info from prmon json
[2026-01-15 00:39:52] 2026-01-15 05:39:20,501 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 00:39:52] 2026-01-15 05:39:20,501 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 00:39:52] 2026-01-15 05:39:20,501 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 00:39:52] 2026-01-15 05:39:20,502 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 00:39:52] 2026-01-15 05:39:20,504 | INFO     | fitting pss+swap vs Time
[2026-01-15 00:39:52] 2026-01-15 05:39:20,504 | INFO     | sum of square deviations: 120605052.0
[2026-01-15 00:39:52] 2026-01-15 05:39:20,505 | INFO     | sum of deviations: -9337773128.000002
[2026-01-15 00:39:52] 2026-01-15 05:39:20,505 | INFO     | mean x: 1768453184.0
[2026-01-15 00:39:52] 2026-01-15 05:39:20,505 | INFO     | mean y: 2743330.794520548
[2026-01-15 00:39:52] 2026-01-15 05:39:20,505 | INFO     | intersect: 136924160351.37874
[2026-01-15 00:39:52] 2026-01-15 05:39:20,505 | INFO     | chi2: 0.08170961559944136
[2026-01-15 00:39:52] 2026-01-15 05:39:20,506 | INFO     | current memory leak: -77.42 B/s (using 73 data points, chi2=0.08)
[2026-01-15 00:39:52] 2026-01-15 05:39:20,506 | INFO     | could have reported an average CPU frequency of 1901 MHz (6 samples)
[2026-01-15 00:39:52] 2026-01-15 05:39:20,506 | INFO     | ..............................
[2026-01-15 00:39:52] 2026-01-15 05:39:20,506 | INFO     | . Timing measurements:
[2026-01-15 00:39:52] 2026-01-15 05:39:20,506 | INFO     | . get job = 0 s
[2026-01-15 00:39:52] 2026-01-15 05:39:20,507 | INFO     | . initial setup = 2 s
[2026-01-15 00:39:52] 2026-01-15 05:39:20,507 | INFO     | . payload setup = 10 s
[2026-01-15 00:39:52] 2026-01-15 05:39:20,507 | INFO     | . stage-in = 0 s
[2026-01-15 00:39:52] 2026-01-15 05:39:20,507 | INFO     | . payload execution = 4870 s
[2026-01-15 00:39:52] 2026-01-15 05:39:20,507 | INFO     | . stage-out = 0 s
[2026-01-15 00:39:52] 2026-01-15 05:39:20,507 | INFO     | . log creation = 0 s
[2026-01-15 00:39:52] 2026-01-15 05:39:20,507 | INFO     | ..............................
[2026-01-15 00:39:52] 2026-01-15 05:39:20,693 | INFO     | 
[2026-01-15 00:39:52] 2026-01-15 05:39:20,694 | INFO     | job summary report
[2026-01-15 00:39:52] 2026-01-15 05:39:20,694 | INFO     | --------------------------------------------------
[2026-01-15 00:39:52] 2026-01-15 05:39:20,694 | INFO     | PanDA job id: 6970065286
[2026-01-15 00:39:52] 2026-01-15 05:39:20,694 | INFO     | task id: 48215263
[2026-01-15 00:39:52] 2026-01-15 05:39:20,694 | INFO     | errors: (none)
[2026-01-15 00:39:52] 2026-01-15 05:39:20,694 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 00:39:52] 2026-01-15 05:39:20,695 | INFO     | pilot state: finished 
[2026-01-15 00:39:52] 2026-01-15 05:39:20,695 | INFO     | transexitcode: 0
[2026-01-15 00:39:52] 2026-01-15 05:39:20,695 | INFO     | exeerrorcode: 0
[2026-01-15 00:39:52] 2026-01-15 05:39:20,695 | INFO     | exeerrordiag: 
[2026-01-15 00:39:52] 2026-01-15 05:39:20,695 | INFO     | exitcode: 0
[2026-01-15 00:39:52] 2026-01-15 05:39:20,695 | INFO     | exitmsg: OK
[2026-01-15 00:39:52] 2026-01-15 05:39:20,696 | INFO     | cpuconsumptiontime: 35882 s
[2026-01-15 00:39:52] 2026-01-15 05:39:20,696 | INFO     | nevents: 400
[2026-01-15 00:39:52] 2026-01-15 05:39:20,696 | INFO     | neventsw: 0
[2026-01-15 00:39:52] 2026-01-15 05:39:20,696 | INFO     | pid: 25968
[2026-01-15 00:39:52] 2026-01-15 05:39:20,696 | INFO     | pgrp: 25968
[2026-01-15 00:39:52] 2026-01-15 05:39:20,697 | INFO     | corecount: 8
[2026-01-15 00:39:52] 2026-01-15 05:39:20,697 | INFO     | event service: False
[2026-01-15 00:39:52] 2026-01-15 05:39:20,697 | INFO     | sizes: {0: 2283952, 8: 2284214, 11: 2284242, 4885: 2310457, 4887: 2319511, 4896: 2319649}
[2026-01-15 00:39:52] 2026-01-15 05:39:20,697 | INFO     | --------------------------------------------------
[2026-01-15 00:39:52] 2026-01-15 05:39:20,697 | INFO     | 
[2026-01-15 00:39:52] 2026-01-15 05:39:20,697 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-15 00:39:52] 2026-01-15 05:39:20,726 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,727 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,727 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,727 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,727 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,727 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,728 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,728 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,728 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,728 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,728 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,729 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,729 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,730 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 00:39:52] 2026-01-15 05:39:20,730 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,730 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 00:39:52] 2026-01-15 05:39:20,730 | INFO     | job 6970065286 has completed (purged errors)
[2026-01-15 00:39:52] 2026-01-15 05:39:20,731 | INFO     | overall cleanup function is called
[2026-01-15 00:39:52] 2026-01-15 05:39:21,738 | INFO     | --- collectZombieJob: --- 10, [25968]
[2026-01-15 00:39:52] 2026-01-15 05:39:21,738 | INFO     | zombie collector waiting for pid 25968
[2026-01-15 00:39:52] 2026-01-15 05:39:21,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 00:39:52] 2026-01-15 05:39:21,739 | INFO     | collected zombie processes
[2026-01-15 00:39:52] 2026-01-15 05:39:21,739 | INFO     | will attempt to kill all subprocesses of pid=25968
[2026-01-15 00:39:52] 2026-01-15 05:39:21,832 | INFO     | process IDs to be killed: [25968] (in reverse order)
[2026-01-15 00:39:52] 2026-01-15 05:39:21,891 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 00:39:52] 2026-01-15 05:39:21,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 00:39:52] 2026-01-15 05:39:21,896 | INFO     | did not find any defunct processes belonging to 25968
[2026-01-15 00:39:52] 2026-01-15 05:39:21,900 | INFO     | did not find any defunct processes belonging to 25968
[2026-01-15 00:39:52] 2026-01-15 05:39:21,900 | INFO     | ready for new job
[2026-01-15 00:39:52] 2026-01-15 05:39:21,900 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 00:39:52] 2026-01-15 05:39:21,902 | INFO     | ***************************************
[2026-01-15 00:39:52] 2026-01-15 05:39:21,902 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 00:39:52] 2026-01-15 05:39:21,902 | INFO     | ***************************************
[2026-01-15 00:39:52] 2026-01-15 05:39:21,902 | INFO     | 
[2026-01-15 00:39:52] 2026-01-15 05:39:21,903 | INFO     | architecture information:
[2026-01-15 00:39:52] 2026-01-15 05:39:21,903 | INFO     | executing command: cat /etc/os-release
[2026-01-15 00:39:52] 2026-01-15 05:39:21,922 | INFO     | cat /etc/os-release:
[2026-01-15 00:39:52] NAME="CentOS Linux"
[2026-01-15 00:39:52] VERSION="7 (Core)"
[2026-01-15 00:39:52] ID="centos"
[2026-01-15 00:39:52] ID_LIKE="rhel fedora"
[2026-01-15 00:39:52] VERSION_ID="7"
[2026-01-15 00:39:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 00:39:52] ANSI_COLOR="0;31"
[2026-01-15 00:39:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 00:39:52] HOME_URL="https://www.centos.org/"
[2026-01-15 00:39:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 00:39:52] 
[2026-01-15 00:39:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 00:39:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 00:39:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 00:39:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 00:39:52] 
[2026-01-15 00:39:52] 2026-01-15 05:39:21,923 | INFO     | ***************************************
[2026-01-15 00:39:52] 2026-01-15 05:39:22,426 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-15 00:39:52] 2026-01-15 05:39:22,446 | INFO     | sufficient remaining disk space (17817403392 B)
[2026-01-15 00:39:52] 2026-01-15 05:39:22,447 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 00:39:52] 2026-01-15 05:39:22,447 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 00:39:52] 2026-01-15 05:39:22,447 | INFO     | update_server=False
[2026-01-15 00:39:52] 2026-01-15 05:39:22,448 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 00:39:52] 2026-01-15 05:39:22,448 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 00:39:52] 2026-01-15 05:39:22,449 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 00:39:52] 2026-01-15 05:39:22,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 00:39:52] 2026-01-15 05:39:22,539 | INFO     | aborting loop
[2026-01-15 00:39:52] 2026-01-15 05:39:22,690 | INFO     | all job control threads have been joined
[2026-01-15 00:39:52] 2026-01-15 05:39:22,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 00:39:52] 2026-01-15 05:39:22,856 | INFO     | all payload control threads have been joined
[2026-01-15 00:39:52] 2026-01-15 05:39:23,453 | INFO     | [job] retrieve thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,454 | INFO     | [job] queue monitor thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,454 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,540 | INFO     | [job] job monitor thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,543 | INFO     | all data control threads have been joined
[2026-01-15 00:39:52] 2026-01-15 05:39:23,696 | INFO     | [job] control thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,862 | INFO     | [payload] control thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,902 | INFO     | [data] copytool_in thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,903 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,963 | INFO     | [payload] validate_post thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,965 | INFO     | [payload] failed_post thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,978 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:23,986 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:24,454 | INFO     | [data] copytool_out thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:24,548 | INFO     | [data] control thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:24,569 | INFO     | [job] validate thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:26,787 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 00:39:52] 2026-01-15 05:39:34,554 | INFO     | [monitor] cgroup control has ended
[2026-01-15 00:39:52] 2026-01-15 05:39:35,048 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139663926191936)>', '<ExcThread(monitor, started 139663125763840)>']
[2026-01-15 00:39:52] 2026-01-15 05:39:40,072 | INFO     | all workflow threads have been joined
[2026-01-15 00:39:52] 2026-01-15 05:39:40,073 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 00:39:52] 2026-01-15 05:39:40,073 | INFO     | traces error code: 0
[2026-01-15 00:39:52] 2026-01-15 05:39:40,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 00:39:52] 2026-01-15 05:39:52,249 | INFO     | PID=19526 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-15 00:39:52] 2026-01-15 05:39:52,250 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 00:39:52] 2026-01-15 05:39:52,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 00:39:52] 2026-01-15 05:39:52,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 00:39:52] 2026-01-15 05:39:52,251 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 00:39:52] 2026-01-15 05:39:52,251 | INFO     | [monitor] control thread has ended
[2026-01-15 00:39:52] 2026-01-15 05:39:52,375 [wrapper] ==== pilot stdout END ====
[2026-01-15 00:39:52] 2026-01-15 05:39:52,380 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 00:39:52] 2026-01-15 05:39:52,384 [wrapper] pilotpid: 19526
[2026-01-15 00:39:52] 2026-01-15 05:39:52,389 [wrapper] Pilot exit status: 0
[2026-01-15 00:39:52] 2026-01-15 05:39:52,409 [wrapper] pandaids: 6970065286
[2026-01-15 00:39:52] 2026-01-15 05:39:52,453 [wrapper] cleanup supervisor_pilot 32476 19527
[2026-01-15 00:39:52] 2026-01-15 05:39:52,458 [wrapper] Test setup, not cleaning
[2026-01-15 00:39:52] 2026-01-15 05:39:52,462 [wrapper] apfmon messages muted
[2026-01-15 00:39:52] 2026-01-15 05:39:52,467 [wrapper] ==== wrapper stdout END ====
[2026-01-15 00:39:52] 2026-01-15 05:39:52,472 [wrapper] ==== wrapper stderr END ====
[2026-01-15 00:39:52]  *** Error codes and diagnostics ***
[2026-01-15 00:39:52]     "exeErrorCode": 0,
[2026-01-15 00:39:52]     "exeErrorDiag": "",
[2026-01-15 00:39:52]     "pilotErrorCode": 0,
[2026-01-15 00:39:52]     "pilotErrorDiag": "",
[2026-01-15 00:39:52]  *** Listing of results directory ***
[2026-01-15 00:39:52] total 739560
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas      5112 Jan 14 20:12 queuedata.json
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas    579449 Jan 14 20:12 pilot3.tar.gz
[2026-01-15 00:39:52] -rwx------ 1 boincer umatlas     36322 Jan 14 20:13 runpilot2-wrapper.sh
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas       100 Jan 14 23:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 00:39:52] -rwxr-xr-x 1 boincer umatlas      7986 Jan 14 23:17 run_atlas
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas       105 Jan 14 23:17 job.xml
[2026-01-15 00:39:52] -rw-r--r-- 2 boincer umatlas 599135543 Jan 14 23:17 EVNT.32794306._001619.pool.root.1
[2026-01-15 00:39:52] -rw-r--r-- 2 boincer umatlas    592408 Jan 14 23:17 input.tar.gz
[2026-01-15 00:39:52] -rw-r--r-- 2 boincer umatlas     15847 Jan 14 23:17 start_atlas.sh
[2026-01-15 00:39:52] drwxrwx--x 2 boincer umatlas      4096 Jan 14 23:17 shared
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas         0 Jan 14 23:17 boinc_lockfile
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas      2509 Jan 14 23:17 pandaJob.out
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas        57 Jan 14 23:17 setup.sh.local
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas    999472 Jan 14 23:17 agis_schedconf.cvmfs.json
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas   1516246 Jan 14 23:17 agis_ddmendpoints.agis.ALL.json
[2026-01-15 00:39:52] drwx------ 5 boincer umatlas      4096 Jan 14 23:17 pilot3
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas      5910 Jan 15 00:38 init_data.xml
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas 152177058 Jan 15 00:38 HITS.48215263._040620.pool.root.1
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas      1047 Jan 15 00:39 memory_monitor_summary.json
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas       530 Jan 15 00:39 boinc_task_state.xml
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas    330847 Jan 15 00:39 log.48215263._040620.job.log.tgz.1
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas      7849 Jan 15 00:39 heartbeat.json
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas      8192 Jan 15 00:39 boinc_mmap_file
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas        27 Jan 15 00:39 wrapper_checkpoint.txt
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas       745 Jan 15 00:39 pilotlog.txt
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas        95 Jan 15 00:39 pilot_heartbeat.json
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas    700672 Jan 15 00:39 log.48215263._040620.job.log.1
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas       357 Jan 15 00:39 output.list
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas       620 Jan 15 00:39 runtime_log
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas   1054720 Jan 15 00:39 result.tar.gz
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas      9342 Jan 15 00:39 runtime_log.err
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas       658 Jan 15 00:39 o7VNDmT6Q08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYQtKDmLaCOtn.diag
[2026-01-15 00:39:52] -rw-r--r-- 1 boincer umatlas     21991 Jan 15 00:39 stderr.txt
[2026-01-15 00:39:52] HITS file was successfully produced:
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas 152177058 Jan 15 00:38 shared/HITS.pool.root.1
[2026-01-15 00:39:52]  *** Contents of shared directory: ***
[2026-01-15 00:39:52] total 735344
[2026-01-15 00:39:52] -rw-r--r-- 2 boincer umatlas 599135543 Jan 14 23:17 ATLAS.root_0
[2026-01-15 00:39:52] -rw-r--r-- 2 boincer umatlas    592408 Jan 14 23:17 input.tar.gz
[2026-01-15 00:39:52] -rw-r--r-- 2 boincer umatlas     15847 Jan 14 23:17 start_atlas.sh
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas 152177058 Jan 15 00:38 HITS.pool.root.1
[2026-01-15 00:39:52] -rw------- 1 boincer umatlas   1054720 Jan 15 00:39 result.tar.gz
00:39:53 (15848): run_atlas exited; CPU time 35826.802257
00:39:53 (15848): called boinc_finish(0)

</stderr_txt>
]]>

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