Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:56:56 (3748455): wrapper (7.7.26015): starting
09:56:56 (3748455): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 09:56:56] Arguments: --nthreads 12
[2026-01-16 09:56:56] Threads: 12
[2026-01-16 09:56:56] Checking for CVMFS
[2026-01-16 09:56:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 09:56:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 09:56:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 09:56:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 09:56:57] 2.13.3.0 40677 10324 73992 155202 1 236 3993625 4096001 18797 130560 0 82536442 99.981 1146454 231 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 09:56:57] CVMFS is ok
[2026-01-16 09:56:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 09:56:57] Checking for apptainer binary...
[2026-01-16 09:56:57] apptainer is not installed, using version from CVMFS
[2026-01-16 09:56:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 09:56:59] epyc7v12
[2026-01-16 09:56:59] apptainer works
[2026-01-16 09:56:59] Set ATHENA_PROC_NUMBER=12
[2026-01-16 09:56:59] Set ATHENA_CORE_NUMBER=12
[2026-01-16 09:56:59] Starting ATLAS job with PandaID=6969710860
[2026-01-16 09:56:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31427/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 11:28:46]  *** The last 200 lines of the pilot log: ***
[2026-01-16 11:28:46] 2026-01-16 11:27:40,000 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-16 11:28:46] 2026-01-16 11:27:40,001 | INFO     | size of work directory /opt/boinc/instance_homes/boinc_31427/slots/1/PanDA_Pilot-6969710860: 4819284 B (within 4404019200 B limit)
[2026-01-16 11:28:46] 2026-01-16 11:27:40,001 | INFO     | pfn file=/opt/boinc/instance_homes/boinc_31427/slots/1/PanDA_Pilot-6969710860/HITS.48215263._035875.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-16 11:28:46] 2026-01-16 11:27:40,002 | INFO     | total size of present files: 0 B (workdir size: 4819284 B)
[2026-01-16 11:28:46] 2026-01-16 11:27:40,002 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31427/slots/1/PanDA_Pilot-6969710860/HITS.48215263._035875.pool.root.1 since it does n
[2026-01-16 11:28:46] 2026-01-16 11:27:41,125 | INFO     | time since job start (5412s) is within the limit (349056.0s)
[2026-01-16 11:28:46] 2026-01-16 11:27:41,269 | INFO     | number of running child processes to parent process 3770389: 1
[2026-01-16 11:28:46] 2026-01-16 11:27:41,269 | INFO     | maximum number of monitored processes: 6
[2026-01-16 11:28:46] 2026-01-16 11:27:41,665 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 11:28:46] 2026-01-16 11:27:42,164 | INFO     | job 6969710860 has state=finished
[2026-01-16 11:28:46] 2026-01-16 11:27:42,165 | INFO     | preparing for final server update for job 6969710860 in state='finished'
[2026-01-16 11:28:46] 2026-01-16 11:27:42,165 | INFO     | this job has now completed (state=finished)
[2026-01-16 11:28:46] 2026-01-16 11:27:42,165 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 11:28:46] 2026-01-16 11:27:42,166 | INFO     | log transfer has been attempted: DONE
[2026-01-16 11:28:46] 2026-01-16 11:27:42,166 | INFO     | job 6969710860 has finished - writing final server update
[2026-01-16 11:28:46] 2026-01-16 11:27:42,166 | INFO     | total number of processed events: 400 (read)
[2026-01-16 11:28:46] 2026-01-16 11:27:42,166 | INFO     | executing command: lscpu
[2026-01-16 11:28:46] 2026-01-16 11:27:42,329 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 11:28:46] 2026-01-16 11:27:43,130 | INFO     | time since job start (5414s) is within the limit (349056.0s)
[2026-01-16 11:28:46] 2026-01-16 11:27:43,773 | INFO     | monitor loop #354: job 0:6969710860 is in state 'finished'
[2026-01-16 11:28:46] 2026-01-16 11:27:43,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:28:46] 2026-01-16 11:27:45,140 | INFO     | time since job start (5416s) is within the limit (349056.0s)
[2026-01-16 11:28:46] 2026-01-16 11:27:46,283 | INFO     | monitor loop #355: job 0:6969710860 is in state 'finished'
[2026-01-16 11:28:46] 2026-01-16 11:27:46,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:28:46] 2026-01-16 11:27:47,667 | INFO     | PID=3763026 has CPU usage=17.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-16 11:28:46] 2026-01-16 11:27:47,670 | INFO     | .. there are 22 such processes running
[2026-01-16 11:28:46] 2026-01-16 11:27:48,674 | INFO     | time since job start (5419s) is within the limit (349056.0s)
[2026-01-16 11:28:46] 2026-01-16 11:27:48,790 | INFO     | monitor loop #356: job 0:6969710860 is in state 'finished'
[2026-01-16 11:28:46] 2026-01-16 11:27:48,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:28:46] 2026-01-16 11:27:50,679 | INFO     | time since job start (5421s) is within the limit (349056.0s)
[2026-01-16 11:28:46] 2026-01-16 11:27:51,293 | INFO     | monitor loop #357: job 0:6969710860 is in state 'finished'
[2026-01-16 11:28:46] 2026-01-16 11:27:51,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:28:46] 2026-01-16 11:27:52,684 | INFO     | time since job start (5423s) is within the limit (349056.0s)
[2026-01-16 11:28:46] 2026-01-16 11:27:53,796 | INFO     | monitor loop #358: job 0:6969710860 is in state 'finished'
[2026-01-16 11:28:46] 2026-01-16 11:27:53,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:28:46] 2026-01-16 11:27:54,692 | INFO     | time since job start (5425s) is within the limit (349056.0s)
[2026-01-16 11:28:46] 2026-01-16 11:27:54,692 | INFO     | 5427s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-16 11:28:46] 2026-01-16 11:27:55,916 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 11:28:46] 2026-01-16 11:27:55,962 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2397.418523437499
[2026-01-16 11:28:46] 2026-01-16 11:27:56,006 | INFO     | using path: /opt/boinc/instance_homes/boinc_31427/slots/1/PanDA_Pilot-6969710860/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 11:28:46] 2026-01-16 11:27:56,007 | INFO     | extracted standard info from prmon json
[2026-01-16 11:28:46] 2026-01-16 11:27:56,007 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 11:28:46] 2026-01-16 11:27:56,007 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 11:28:46] 2026-01-16 11:27:56,008 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 11:28:46] 2026-01-16 11:27:56,008 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 11:28:46] 2026-01-16 11:27:56,010 | INFO     | fitting pss+swap vs Time
[2026-01-16 11:28:46] 2026-01-16 11:27:56,010 | INFO     | sum of square deviations: 164765880.0
[2026-01-16 11:28:46] 2026-01-16 11:27:56,011 | INFO     | sum of deviations: 4235238662.0000005
[2026-01-16 11:28:46] 2026-01-16 11:27:56,011 | INFO     | mean x: 1768560263.0
[2026-01-16 11:28:46] 2026-01-16 11:27:56,011 | INFO     | mean y: 2688329.6049382715
[2026-01-16 11:28:46] 2026-01-16 11:27:56,011 | INFO     | intersect: -45457420292.001
[2026-01-16 11:28:46] 2026-01-16 11:27:56,011 | INFO     | chi2: 0.12597222986571494
[2026-01-16 11:28:46] 2026-01-16 11:27:56,011 | INFO     | current memory leak: 25.70 B/s (using 81 data points, chi2=0.13)
[2026-01-16 11:28:46] 2026-01-16 11:27:56,012 | INFO     | could have reported an average CPU frequency of 2400 MHz (6 samples)
[2026-01-16 11:28:46] 2026-01-16 11:27:56,012 | INFO     | ..............................
[2026-01-16 11:28:46] 2026-01-16 11:27:56,012 | INFO     | . Timing measurements:
[2026-01-16 11:28:46] 2026-01-16 11:27:56,012 | INFO     | . get job = 0 s
[2026-01-16 11:28:46] 2026-01-16 11:27:56,012 | INFO     | . initial setup = 2 s
[2026-01-16 11:28:46] 2026-01-16 11:27:56,012 | INFO     | . payload setup = 17 s
[2026-01-16 11:28:46] 2026-01-16 11:27:56,012 | INFO     | . stage-in = 0 s
[2026-01-16 11:28:46] 2026-01-16 11:27:56,012 | INFO     | . payload execution = 5348 s
[2026-01-16 11:28:46] 2026-01-16 11:27:56,013 | INFO     | . stage-out = 1 s
[2026-01-16 11:28:46] 2026-01-16 11:27:56,013 | INFO     | . log creation = 0 s
[2026-01-16 11:28:46] 2026-01-16 11:27:56,013 | INFO     | ..............................
[2026-01-16 11:28:46] 2026-01-16 11:27:56,378 | INFO     | 
[2026-01-16 11:28:46] 2026-01-16 11:27:56,378 | INFO     | job summary report
[2026-01-16 11:28:46] 2026-01-16 11:27:56,378 | INFO     | --------------------------------------------------
[2026-01-16 11:28:46] 2026-01-16 11:27:56,378 | INFO     | PanDA job id: 6969710860
[2026-01-16 11:28:46] 2026-01-16 11:27:56,379 | INFO     | task id: 48215263
[2026-01-16 11:28:46] 2026-01-16 11:27:56,379 | INFO     | errors: (none)
[2026-01-16 11:28:46] 2026-01-16 11:27:56,379 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 11:28:46] 2026-01-16 11:27:56,379 | INFO     | pilot state: finished 
[2026-01-16 11:28:46] 2026-01-16 11:27:56,379 | INFO     | transexitcode: 0
[2026-01-16 11:28:46] 2026-01-16 11:27:56,379 | INFO     | exeerrorcode: 0
[2026-01-16 11:28:46] 2026-01-16 11:27:56,379 | INFO     | exeerrordiag: 
[2026-01-16 11:28:46] 2026-01-16 11:27:56,379 | INFO     | exitcode: 0
[2026-01-16 11:28:46] 2026-01-16 11:27:56,379 | INFO     | exitmsg: OK
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | cpuconsumptiontime: 29722 s
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | nevents: 400
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | neventsw: 0
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | pid: 3770389
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | pgrp: 3770389
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | corecount: 12
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | event service: False
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | sizes: {0: 2283804, 1: 2284003, 12: 2284003, 14: 2284293, 23: 2284321, 5370: 2310885, 5371: 2311012, 5373: 2320112, 5375: 2320196, 5390: 2320390}
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | --------------------------------------------------
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | 
[2026-01-16 11:28:46] 2026-01-16 11:27:56,380 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31427/slots/1
[2026-01-16 11:28:46] 2026-01-16 11:27:56,444 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,445 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,445 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,445 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 11:28:46] 2026-01-16 11:27:56,446 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,447 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 11:28:46] 2026-01-16 11:27:56,447 | INFO     | job 6969710860 has completed (purged errors)
[2026-01-16 11:28:46] 2026-01-16 11:27:56,448 | INFO     | overall cleanup function is called
[2026-01-16 11:28:46] 2026-01-16 11:27:57,464 | INFO     | --- collectZombieJob: --- 10, [3770389]
[2026-01-16 11:28:46] 2026-01-16 11:27:57,464 | INFO     | zombie collector waiting for pid 3770389
[2026-01-16 11:28:46] 2026-01-16 11:27:57,464 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 11:28:46] 2026-01-16 11:27:57,465 | INFO     | collected zombie processes
[2026-01-16 11:28:46] 2026-01-16 11:27:57,465 | INFO     | will attempt to kill all subprocesses of pid=3770389
[2026-01-16 11:28:46] 2026-01-16 11:27:58,594 | INFO     | process IDs to be killed: [3770389] (in reverse order)
[2026-01-16 11:28:46] 2026-01-16 11:27:59,133 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 11:28:46] 2026-01-16 11:27:59,134 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 11:28:46] 2026-01-16 11:27:59,178 | INFO     | did not find any defunct processes belonging to 3770389
[2026-01-16 11:28:46] 2026-01-16 11:27:59,213 | INFO     | did not find any defunct processes belonging to 3770389
[2026-01-16 11:28:46] 2026-01-16 11:27:59,213 | INFO     | ready for new job
[2026-01-16 11:28:46] 2026-01-16 11:27:59,213 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 11:28:46] 2026-01-16 11:27:59,223 | INFO     | ***************************************
[2026-01-16 11:28:46] 2026-01-16 11:27:59,224 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 11:28:46] 2026-01-16 11:27:59,224 | INFO     | ***************************************
[2026-01-16 11:28:46] 2026-01-16 11:27:59,228 | INFO     | 
[2026-01-16 11:28:46] 2026-01-16 11:27:59,256 | INFO     | architecture information:
[2026-01-16 11:28:46] 2026-01-16 11:27:59,257 | INFO     | executing command: cat /etc/os-release
[2026-01-16 11:28:46] 2026-01-16 11:27:59,307 | INFO     | cat /etc/os-release:
[2026-01-16 11:28:46] NAME="CentOS Linux"
[2026-01-16 11:28:46] VERSION="7 (Core)"
[2026-01-16 11:28:46] ID="centos"
[2026-01-16 11:28:46] ID_LIKE="rhel fedora"
[2026-01-16 11:28:46] VERSION_ID="7"
[2026-01-16 11:28:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 11:28:46] ANSI_COLOR="0;31"
[2026-01-16 11:28:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 11:28:46] HOME_URL="https://www.centos.org/"
[2026-01-16 11:28:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 11:28:46] 
[2026-01-16 11:28:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 11:28:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 11:28:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 11:28:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 11:28:46] 
[2026-01-16 11:28:46] 2026-01-16 11:27:59,308 | INFO     | ***************************************
[2026-01-16 11:28:46] 2026-01-16 11:27:59,811 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31427/slots/1
[2026-01-16 11:28:46] 2026-01-16 11:27:59,869 | INFO     | sufficient remaining disk space (276468596736 B)
[2026-01-16 11:28:46] 2026-01-16 11:27:59,869 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 11:28:46] 2026-01-16 11:27:59,870 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 11:28:46] 2026-01-16 11:27:59,870 | INFO     | update_server=False
[2026-01-16 11:28:46] 2026-01-16 11:27:59,870 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 11:28:46] 2026-01-16 11:27:59,873 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 11:28:46] 2026-01-16 11:27:59,873 | INFO     | aborting loop
[2026-01-16 11:28:46] 2026-01-16 11:27:59,899 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 11:28:46] 2026-01-16 11:28:00,388 | INFO     | all job control threads have been joined
[2026-01-16 11:28:46] 2026-01-16 11:28:00,537 | INFO     | all data control threads have been joined
[2026-01-16 11:28:46] 2026-01-16 11:28:00,634 | INFO     | all payload control threads have been joined
[2026-01-16 11:28:46] 2026-01-16 11:28:00,878 | INFO     | [job] job monitor thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:00,881 | INFO     | [job] retrieve thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:00,882 | INFO     | [job] validate thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:01,052 | INFO     | [payload] failed_post thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:01,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 11:28:46] 2026-01-16 11:28:01,339 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 11:28:46] 2026-01-16 11:28:01,388 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:01,393 | INFO     | [job] control thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:01,412 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:01,542 | INFO     | [data] control thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:01,639 | INFO     | [payload] control thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:01,904 | INFO     | [data] copytool_out thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:01,937 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:02,137 | INFO     | [payload] validate_post thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:02,200 | INFO     | [job] queue monitor thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:02,270 | INFO     | [data] copytool_in thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:05,344 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:10,556 | INFO     | job.realtimelogging is not enabled
[2026-01-16 11:28:46] 2026-01-16 11:28:11,563 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 11:28:46] 2026-01-16 11:28:28,920 | INFO     | PID=3763026 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 11:28:46] 2026-01-16 11:28:28,923 | INFO     | .. there are 22 such processes running
[2026-01-16 11:28:46] 2026-01-16 11:28:28,923 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 11:28:46] 2026-01-16 11:28:28,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 11:28:46] 2026-01-16 11:28:28,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 11:28:46] 2026-01-16 11:28:38,262 | INFO     | [monitor] cgroup control has ended
[2026-01-16 11:28:46] 2026-01-16 11:28:40,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132309452588864)>', '<ExcThread(monitor, started 132309034440448)>']
[2026-01-16 11:28:46] 2026-01-16 11:28:40,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 11:28:46] 2026-01-16 11:28:40,988 | INFO     | [monitor] control thread has ended
[2026-01-16 11:28:46] 2026-01-16 11:28:45,304 | INFO     | all workflow threads have been joined
[2026-01-16 11:28:46] 2026-01-16 11:28:45,304 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 11:28:46] 2026-01-16 11:28:45,305 | INFO     | traces error code: 0
[2026-01-16 11:28:46] 2026-01-16 11:28:45,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 11:28:46] 2026-01-16 11:28:45,493 [wrapper] ==== pilot stdout END ====
[2026-01-16 11:28:46] 2026-01-16 11:28:45,502 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 11:28:46] 2026-01-16 11:28:45,509 [wrapper] pilotpid: 3763026
[2026-01-16 11:28:46] 2026-01-16 11:28:45,520 [wrapper] Pilot exit status: 0
[2026-01-16 11:28:46] 2026-01-16 11:28:45,557 [wrapper] pandaids: 6969710860
[2026-01-16 11:28:46] 2026-01-16 11:28:45,799 [wrapper] cleanup supervisor_pilot   29403 3763027
[2026-01-16 11:28:46] 2026-01-16 11:28:45,809 [wrapper] Test setup, not cleaning
[2026-01-16 11:28:46] 2026-01-16 11:28:45,817 [wrapper] apfmon messages muted
[2026-01-16 11:28:46] 2026-01-16 11:28:45,827 [wrapper] ==== wrapper stdout END ====
[2026-01-16 11:28:46] 2026-01-16 11:28:45,837 [wrapper] ==== wrapper stderr END ====
[2026-01-16 11:28:46]  *** Error codes and diagnostics ***
[2026-01-16 11:28:46]     "exeErrorCode": 0,
[2026-01-16 11:28:46]     "exeErrorDiag": "",
[2026-01-16 11:28:46]     "pilotErrorCode": 0,
[2026-01-16 11:28:46]     "pilotErrorDiag": "",
[2026-01-16 11:28:46]  *** Listing of results directory ***
[2026-01-16 11:28:46] total 731620
[2026-01-16 11:28:46] -rw-r--r-- 1 boinc boinc    579449 Jan 14 21:43 pilot3.tar.gz
[2026-01-16 11:28:46] -rw-r--r-- 1 boinc boinc      5112 Jan 14 21:43 queuedata.json
[2026-01-16 11:28:46] -rwx------ 1 boinc boinc     36322 Jan 14 21:43 runpilot2-wrapper.sh
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc       100 Jan 16 09:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 11:28:46] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 09:56 run_atlas
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc       105 Jan 16 09:56 job.xml
[2026-01-16 11:28:46] -rw-r--r-- 2 boinc boinc 590730159 Jan 16 09:56 EVNT.32794306._001433.pool.root.1
[2026-01-16 11:28:46] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:56 start_atlas.sh
[2026-01-16 11:28:46] drwxrwx--x 2 boinc boinc      4096 Jan 16 09:56 shared
[2026-01-16 11:28:46] -rw-r--r-- 2 boinc boinc    592406 Jan 16 09:56 input.tar.gz
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 09:56 init_data.xml
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc         0 Jan 16 09:56 boinc_setup_complete
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc         0 Jan 16 09:56 boinc_lockfile
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc      2509 Jan 16 09:56 pandaJob.out
[2026-01-16 11:28:46] -rw------- 1 boinc boinc   1004067 Jan 16 09:57 agis_schedconf.cvmfs.json
[2026-01-16 11:28:46] -rw------- 1 boinc boinc   1516246 Jan 16 09:57 agis_ddmendpoints.agis.ALL.json
[2026-01-16 11:28:46] drwx------ 5 boinc boinc      4096 Jan 16 09:57 pilot3
[2026-01-16 11:28:46] -rw------- 1 boinc boinc 152195834 Jan 16 11:26 HITS.48215263._035875.pool.root.1
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc       531 Jan 16 11:27 boinc_task_state.xml
[2026-01-16 11:28:46] -rw------- 1 boinc boinc      1020 Jan 16 11:27 memory_monitor_summary.json
[2026-01-16 11:28:46] -rw------- 1 boinc boinc        95 Jan 16 11:27 pilot_heartbeat.json
[2026-01-16 11:28:46] -rw------- 1 boinc boinc    405085 Jan 16 11:27 log.48215263._035875.job.log.tgz.1
[2026-01-16 11:28:46] -rw------- 1 boinc boinc      7730 Jan 16 11:27 heartbeat.json
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 11:28 boinc_mmap_file
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc        27 Jan 16 11:28 wrapper_checkpoint.txt
[2026-01-16 11:28:46] -rw------- 1 boinc boinc      4920 Jan 16 11:28 pilotlog.txt
[2026-01-16 11:28:46] -rw------- 1 boinc boinc    755654 Jan 16 11:28 log.48215263._035875.job.log.1
[2026-01-16 11:28:46] -rw------- 1 boinc boinc       357 Jan 16 11:28 output.list
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc       620 Jan 16 11:28 runtime_log
[2026-01-16 11:28:46] -rw------- 1 boinc boinc   1177600 Jan 16 11:28 result.tar.gz
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 11:28 runtime_log.err
[2026-01-16 11:28:46] -rw------- 1 boinc boinc       652 Jan 16 11:28 phrNDmfpN08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIhmKDmvi9bXn.diag
[2026-01-16 11:28:46] -rw-rw-r-- 1 boinc boinc     22406 Jan 16 11:28 stderr.txt
[2026-01-16 11:28:46] HITS file was successfully produced:
[2026-01-16 11:28:46] -rw------- 1 boinc boinc 152195834 Jan 16 11:26 shared/HITS.pool.root.1
[2026-01-16 11:28:46]  *** Contents of shared directory: ***
[2026-01-16 11:28:46] total 727276
[2026-01-16 11:28:46] -rw-r--r-- 2 boinc boinc 590730159 Jan 16 09:56 ATLAS.root_0
[2026-01-16 11:28:46] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:56 start_atlas.sh
[2026-01-16 11:28:46] -rw-r--r-- 2 boinc boinc    592406 Jan 16 09:56 input.tar.gz
[2026-01-16 11:28:46] -rw------- 1 boinc boinc 152195834 Jan 16 11:26 HITS.pool.root.1
[2026-01-16 11:28:46] -rw------- 1 boinc boinc   1177600 Jan 16 11:28 result.tar.gz
11:28:47 (3748455): run_atlas exited; CPU time 30030.180311
11:28:47 (3748455): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN