Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:46:55 (3679066): wrapper (7.7.26015): starting
09:46:55 (3679066): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 09:46:55] Arguments: --nthreads 12
[2026-01-16 09:46:55] Threads: 12
[2026-01-16 09:46:55] Checking for CVMFS
[2026-01-16 09:46:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 09:46:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 09:46:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 09:46:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 09:46:57] 2.13.3.0 40677 10314 73996 155202 3 236 3993618 4096001 18916 130560 0 82336733 99.981 1146452 231 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 09:46:57] CVMFS is ok
[2026-01-16 09:46:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 09:46:57] Checking for apptainer binary...
[2026-01-16 09:46:58] apptainer is not installed, using version from CVMFS
[2026-01-16 09:46:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 09:47:00] epyc7v12
[2026-01-16 09:47:00] apptainer works
[2026-01-16 09:47:00] Set ATHENA_PROC_NUMBER=12
[2026-01-16 09:47:00] Set ATHENA_CORE_NUMBER=12
[2026-01-16 09:47:00] Starting ATLAS job with PandaID=6969632888
[2026-01-16 09:47:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31426/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 11:21:45]  *** The last 200 lines of the pilot log: ***
[2026-01-16 11:21:46] 2026-01-16 11:20:23,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:21:46] 2026-01-16 11:20:23,789 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 11:21:46] 2026-01-16 11:20:24,591 | INFO     | time since job start (5574s) is within the limit (349056.0s)
[2026-01-16 11:21:46] 2026-01-16 11:20:25,720 | INFO     | monitor loop #367: job 0:6969632888 is in state 'finished'
[2026-01-16 11:21:46] 2026-01-16 11:20:25,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:21:46] 2026-01-16 11:20:26,468 | INFO     | job 6969632888 has state=finished
[2026-01-16 11:21:46] 2026-01-16 11:20:26,468 | INFO     | preparing for final server update for job 6969632888 in state='finished'
[2026-01-16 11:21:46] 2026-01-16 11:20:26,600 | INFO     | time since job start (5576s) is within the limit (349056.0s)
[2026-01-16 11:21:46] 2026-01-16 11:20:27,113 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-16 11:21:46] 2026-01-16 11:20:27,113 | INFO     | this job has now completed (state=finished)
[2026-01-16 11:21:46] 2026-01-16 11:20:27,113 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 11:21:46] 2026-01-16 11:20:27,113 | INFO     | log transfer has been attempted: DONE
[2026-01-16 11:21:46] 2026-01-16 11:20:27,113 | INFO     | job 6969632888 has finished - writing final server update
[2026-01-16 11:21:46] 2026-01-16 11:20:27,114 | INFO     | total number of processed events: 400 (read)
[2026-01-16 11:21:46] 2026-01-16 11:20:27,118 | INFO     | executing command: lscpu
[2026-01-16 11:21:46] 2026-01-16 11:20:27,323 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 11:21:46] 2026-01-16 11:20:28,223 | INFO     | monitor loop #368: job 0:6969632888 is in state 'finished'
[2026-01-16 11:21:46] 2026-01-16 11:20:28,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:21:46] 2026-01-16 11:20:28,608 | INFO     | time since job start (5578s) is within the limit (349056.0s)
[2026-01-16 11:21:46] 2026-01-16 11:20:30,613 | INFO     | time since job start (5580s) is within the limit (349056.0s)
[2026-01-16 11:21:46] 2026-01-16 11:20:30,728 | INFO     | monitor loop #369: job 0:6969632888 is in state 'finished'
[2026-01-16 11:21:46] 2026-01-16 11:20:30,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:21:46] 2026-01-16 11:20:32,621 | INFO     | time since job start (5582s) is within the limit (349056.0s)
[2026-01-16 11:21:46] 2026-01-16 11:20:33,235 | INFO     | monitor loop #370: job 0:6969632888 is in state 'finished'
[2026-01-16 11:21:46] 2026-01-16 11:20:33,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:21:46] 2026-01-16 11:20:34,626 | INFO     | time since job start (5584s) is within the limit (349056.0s)
[2026-01-16 11:21:46] 2026-01-16 11:20:35,739 | INFO     | monitor loop #371: job 0:6969632888 is in state 'finished'
[2026-01-16 11:21:46] 2026-01-16 11:20:35,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:21:46] 2026-01-16 11:20:36,636 | INFO     | time since job start (5586s) is within the limit (349056.0s)
[2026-01-16 11:21:46] 2026-01-16 11:20:38,242 | INFO     | monitor loop #372: job 0:6969632888 is in state 'finished'
[2026-01-16 11:21:46] 2026-01-16 11:20:38,243 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:21:46] 2026-01-16 11:20:39,661 | INFO     | PID=3683271 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-16 11:21:46] 2026-01-16 11:20:39,663 | INFO     | .. there are 22 such processes running
[2026-01-16 11:21:46] 2026-01-16 11:20:40,666 | INFO     | time since job start (5590s) is within the limit (349056.0s)
[2026-01-16 11:21:46] 2026-01-16 11:20:40,758 | INFO     | monitor loop #373: job 0:6969632888 is in state 'finished'
[2026-01-16 11:21:46] 2026-01-16 11:20:40,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 11:21:46] 2026-01-16 11:20:41,529 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 11:21:46] 2026-01-16 11:20:41,577 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2400.7789062500005
[2026-01-16 11:21:46] 2026-01-16 11:20:41,630 | INFO     | using path: /opt/boinc/instance_homes/boinc_31426/slots/0/PanDA_Pilot-6969632888/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 11:21:46] 2026-01-16 11:20:41,634 | INFO     | extracted standard info from prmon json
[2026-01-16 11:21:46] 2026-01-16 11:20:41,634 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 11:21:46] 2026-01-16 11:20:41,634 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 11:21:46] 2026-01-16 11:20:41,635 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 11:21:46] 2026-01-16 11:20:41,635 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 11:21:46] 2026-01-16 11:20:41,639 | INFO     | fitting pss+swap vs Time
[2026-01-16 11:21:46] 2026-01-16 11:20:41,639 | INFO     | sum of square deviations: 183761585.0
[2026-01-16 11:21:46] 2026-01-16 11:20:41,643 | INFO     | sum of deviations: 3434939829.000001
[2026-01-16 11:21:46] 2026-01-16 11:20:41,643 | INFO     | mean x: 1768559757.5
[2026-01-16 11:21:46] 2026-01-16 11:20:41,643 | INFO     | mean y: 2689535.619047619
[2026-01-16 11:21:46] 2026-01-16 11:20:41,643 | INFO     | intersect: -33055886613.489227
[2026-01-16 11:21:46] 2026-01-16 11:20:41,644 | INFO     | chi2: 0.09717045619929211
[2026-01-16 11:21:46] 2026-01-16 11:20:41,644 | INFO     | current memory leak: 18.69 B/s (using 84 data points, chi2=0.10)
[2026-01-16 11:21:46] 2026-01-16 11:20:41,644 | INFO     | could have reported an average CPU frequency of 2398 MHz (7 samples)
[2026-01-16 11:21:46] 2026-01-16 11:20:41,644 | INFO     | ..............................
[2026-01-16 11:21:46] 2026-01-16 11:20:41,645 | INFO     | . Timing measurements:
[2026-01-16 11:21:46] 2026-01-16 11:20:41,645 | INFO     | . get job = 0 s
[2026-01-16 11:21:46] 2026-01-16 11:20:41,645 | INFO     | . initial setup = 2 s
[2026-01-16 11:21:46] 2026-01-16 11:20:41,645 | INFO     | . payload setup = 17 s
[2026-01-16 11:21:46] 2026-01-16 11:20:41,645 | INFO     | . stage-in = 0 s
[2026-01-16 11:21:46] 2026-01-16 11:20:41,645 | INFO     | . payload execution = 5508 s
[2026-01-16 11:21:46] 2026-01-16 11:20:41,645 | INFO     | . stage-out = 1 s
[2026-01-16 11:21:46] 2026-01-16 11:20:41,645 | INFO     | . log creation = 0 s
[2026-01-16 11:21:46] 2026-01-16 11:20:41,645 | INFO     | ..............................
[2026-01-16 11:21:46] 2026-01-16 11:20:41,849 | INFO     | 
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | job summary report
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | --------------------------------------------------
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | PanDA job id: 6969632888
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | task id: 48215263
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | errors: (none)
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | pilot state: finished 
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | transexitcode: 0
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | exeerrorcode: 0
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | exeerrordiag: 
[2026-01-16 11:21:46] 2026-01-16 11:20:41,850 | INFO     | exitcode: 0
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | exitmsg: OK
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | cpuconsumptiontime: 30272 s
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | nevents: 400
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | neventsw: 0
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | pid: 3695190
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | pgrp: 3695190
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | corecount: 12
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | event service: False
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | sizes: {0: 2283123, 1: 2283888, 2: 2284030, 13: 2284030, 15: 2284348, 24: 2284376, 5530: 2311175, 5533: 2320219, 5535: 2320275, 5553: 2320469}
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | --------------------------------------------------
[2026-01-16 11:21:46] 2026-01-16 11:20:41,851 | INFO     | 
[2026-01-16 11:21:46] 2026-01-16 11:20:41,852 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31426/slots/0
[2026-01-16 11:21:46] 2026-01-16 11:20:41,909 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,910 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,910 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,910 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,912 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,912 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,912 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,912 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,912 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,912 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,913 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 11:21:46] 2026-01-16 11:20:41,914 | INFO     | job 6969632888 has completed (purged errors)
[2026-01-16 11:21:46] 2026-01-16 11:20:41,914 | INFO     | overall cleanup function is called
[2026-01-16 11:21:46] 2026-01-16 11:20:42,931 | INFO     | --- collectZombieJob: --- 10, [3695190]
[2026-01-16 11:21:46] 2026-01-16 11:20:42,931 | INFO     | zombie collector waiting for pid 3695190
[2026-01-16 11:21:46] 2026-01-16 11:20:42,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 11:21:46] 2026-01-16 11:20:42,931 | INFO     | collected zombie processes
[2026-01-16 11:21:46] 2026-01-16 11:20:42,932 | INFO     | will attempt to kill all subprocesses of pid=3695190
[2026-01-16 11:21:46] 2026-01-16 11:20:44,226 | INFO     | process IDs to be killed: [3695190] (in reverse order)
[2026-01-16 11:21:46] 2026-01-16 11:20:44,835 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 11:21:46] 2026-01-16 11:20:44,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 11:21:46] 2026-01-16 11:20:44,856 | INFO     | did not find any defunct processes belonging to 3695190
[2026-01-16 11:21:46] 2026-01-16 11:20:44,895 | INFO     | did not find any defunct processes belonging to 3695190
[2026-01-16 11:21:46] 2026-01-16 11:20:44,895 | INFO     | ready for new job
[2026-01-16 11:21:46] 2026-01-16 11:20:44,895 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 11:21:46] 2026-01-16 11:20:44,900 | INFO     | ***************************************
[2026-01-16 11:21:46] 2026-01-16 11:20:44,903 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 11:21:46] 2026-01-16 11:20:44,903 | INFO     | ***************************************
[2026-01-16 11:21:46] 2026-01-16 11:20:44,903 | INFO     | 
[2026-01-16 11:21:46] 2026-01-16 11:20:44,922 | INFO     | architecture information:
[2026-01-16 11:21:46] 2026-01-16 11:20:44,923 | INFO     | executing command: cat /etc/os-release
[2026-01-16 11:21:46] 2026-01-16 11:20:44,968 | INFO     | cat /etc/os-release:
[2026-01-16 11:21:46] NAME="CentOS Linux"
[2026-01-16 11:21:46] VERSION="7 (Core)"
[2026-01-16 11:21:46] ID="centos"
[2026-01-16 11:21:46] ID_LIKE="rhel fedora"
[2026-01-16 11:21:46] VERSION_ID="7"
[2026-01-16 11:21:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 11:21:46] ANSI_COLOR="0;31"
[2026-01-16 11:21:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 11:21:46] HOME_URL="https://www.centos.org/"
[2026-01-16 11:21:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 11:21:46] 
[2026-01-16 11:21:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 11:21:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 11:21:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 11:21:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 11:21:46] 
[2026-01-16 11:21:46] 2026-01-16 11:20:44,968 | INFO     | ***************************************
[2026-01-16 11:21:46] 2026-01-16 11:20:45,474 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31426/slots/0
[2026-01-16 11:21:46] 2026-01-16 11:20:45,519 | INFO     | sufficient remaining disk space (275206111232 B)
[2026-01-16 11:21:46] 2026-01-16 11:20:45,519 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 11:21:46] 2026-01-16 11:20:45,520 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 11:21:46] 2026-01-16 11:20:45,520 | INFO     | update_server=False
[2026-01-16 11:21:46] 2026-01-16 11:20:45,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 11:21:46] 2026-01-16 11:20:45,775 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-16 11:21:46] 2026-01-16 11:20:45,775 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-16 11:21:46] 2026-01-16 11:20:45,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 11:21:46] 2026-01-16 11:20:45,776 | INFO     | will abort loop
[2026-01-16 11:21:46] 2026-01-16 11:20:45,960 | INFO     | all payload control threads have been joined
[2026-01-16 11:21:46] 2026-01-16 11:20:45,964 | INFO     | all job control threads have been joined
[2026-01-16 11:21:46] 2026-01-16 11:20:46,531 | INFO     | [job] retrieve thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:46,548 | INFO     | all data control threads have been joined
[2026-01-16 11:21:46] 2026-01-16 11:20:46,626 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:46,638 | INFO     | [data] copytool_in thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:46,756 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:46,771 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 11:21:46] 2026-01-16 11:20:46,780 | INFO     | [job] job monitor thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:46,865 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 11:21:46] 2026-01-16 11:20:46,965 | INFO     | [payload] control thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:46,969 | INFO     | [job] control thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:47,024 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:47,042 | INFO     | [payload] failed_post thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:47,132 | INFO     | [job] validate thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:47,247 | INFO     | [payload] validate_post thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:47,554 | INFO     | [data] control thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:47,561 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:47,870 | INFO     | [job] queue monitor thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:48,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 11:21:46] 2026-01-16 11:20:48,778 | INFO     | [data] copytool_out thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:20:52,073 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 11:21:46] 2026-01-16 11:21:15,384 | INFO     | PID=3683271 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 11:21:46] 2026-01-16 11:21:15,384 | INFO     | .. there are 22 such processes running
[2026-01-16 11:21:46] 2026-01-16 11:21:15,385 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 11:21:46] 2026-01-16 11:21:15,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 11:21:46] 2026-01-16 11:21:15,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 11:21:46] 2026-01-16 11:21:39,542 | INFO     | [monitor] cgroup control has ended
[2026-01-16 11:21:46] 2026-01-16 11:21:40,177 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130956427343680)>', '<ExcThread(monitor, started 130955884877568)>']
[2026-01-16 11:21:46] 2026-01-16 11:21:40,529 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 11:21:46] 2026-01-16 11:21:40,529 | INFO     | [monitor] control thread has ended
[2026-01-16 11:21:46] 2026-01-16 11:21:45,202 | INFO     | all workflow threads have been joined
[2026-01-16 11:21:46] 2026-01-16 11:21:45,202 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 11:21:46] 2026-01-16 11:21:45,202 | INFO     | traces error code: 0
[2026-01-16 11:21:46] 2026-01-16 11:21:45,203 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 11:21:46] 2026-01-16 11:21:45,500 [wrapper] ==== pilot stdout END ====
[2026-01-16 11:21:46] 2026-01-16 11:21:45,509 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 11:21:46] 2026-01-16 11:21:45,515 [wrapper] pilotpid: 3683271
[2026-01-16 11:21:46] 2026-01-16 11:21:45,523 [wrapper] Pilot exit status: 0
[2026-01-16 11:21:46] 2026-01-16 11:21:45,553 [wrapper] pandaids: 6969632888
[2026-01-16 11:21:46] 2026-01-16 11:21:45,711 [wrapper] cleanup supervisor_pilot 4179559 3683272
[2026-01-16 11:21:46] 2026-01-16 11:21:45,720 [wrapper] Test setup, not cleaning
[2026-01-16 11:21:46] 2026-01-16 11:21:45,729 [wrapper] apfmon messages muted
[2026-01-16 11:21:46] 2026-01-16 11:21:45,740 [wrapper] ==== wrapper stdout END ====
[2026-01-16 11:21:46] 2026-01-16 11:21:45,746 [wrapper] ==== wrapper stderr END ====
[2026-01-16 11:21:46]  *** Error codes and diagnostics ***
[2026-01-16 11:21:46]     "exeErrorCode": 0,
[2026-01-16 11:21:46]     "exeErrorDiag": "",
[2026-01-16 11:21:46]     "pilotErrorCode": 0,
[2026-01-16 11:21:46]     "pilotErrorDiag": "",
[2026-01-16 11:21:46]  *** Listing of results directory ***
[2026-01-16 11:21:46] total 741548
[2026-01-16 11:21:46] -rw-r--r-- 1 boinc boinc      5112 Jan 14 20:15 queuedata.json
[2026-01-16 11:21:46] -rw-r--r-- 1 boinc boinc    579449 Jan 14 20:15 pilot3.tar.gz
[2026-01-16 11:21:46] -rwx------ 1 boinc boinc     36322 Jan 14 20:16 runpilot2-wrapper.sh
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc       100 Jan 16 09:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 11:21:46] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 09:46 run_atlas
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc       105 Jan 16 09:46 job.xml
[2026-01-16 11:21:46] -rw-r--r-- 2 boinc boinc 600022504 Jan 16 09:46 EVNT.32794306._001377.pool.root.1
[2026-01-16 11:21:46] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:46 start_atlas.sh
[2026-01-16 11:21:46] drwxrwx--x 2 boinc boinc      4096 Jan 16 09:46 shared
[2026-01-16 11:21:46] -rw-r--r-- 2 boinc boinc    592403 Jan 16 09:46 input.tar.gz
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc         0 Jan 16 09:46 boinc_setup_complete
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 09:46 init_data.xml
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc         0 Jan 16 09:46 boinc_lockfile
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc      2508 Jan 16 09:47 pandaJob.out
[2026-01-16 11:21:46] -rw------- 1 boinc boinc   1004067 Jan 16 09:47 agis_schedconf.cvmfs.json
[2026-01-16 11:21:46] -rw------- 1 boinc boinc   1516246 Jan 16 09:47 agis_ddmendpoints.agis.ALL.json
[2026-01-16 11:21:46] drwx------ 5 boinc boinc      4096 Jan 16 09:47 pilot3
[2026-01-16 11:21:46] -rw------- 1 boinc boinc 153031654 Jan 16 11:19 HITS.48215263._034443.pool.root.1
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc       531 Jan 16 11:19 boinc_task_state.xml
[2026-01-16 11:21:46] -rw------- 1 boinc boinc      1021 Jan 16 11:20 memory_monitor_summary.json
[2026-01-16 11:21:46] -rw------- 1 boinc boinc    399201 Jan 16 11:20 log.48215263._034443.job.log.tgz.1
[2026-01-16 11:21:46] -rw------- 1 boinc boinc        95 Jan 16 11:20 pilot_heartbeat.json
[2026-01-16 11:21:46] -rw------- 1 boinc boinc      7728 Jan 16 11:20 heartbeat.json
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 11:21 boinc_mmap_file
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc        27 Jan 16 11:21 wrapper_checkpoint.txt
[2026-01-16 11:21:46] -rw------- 1 boinc boinc      5034 Jan 16 11:21 pilotlog.txt
[2026-01-16 11:21:46] -rw------- 1 boinc boinc    781354 Jan 16 11:21 log.48215263._034443.job.log.1
[2026-01-16 11:21:46] -rw------- 1 boinc boinc       357 Jan 16 11:21 output.list
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc       620 Jan 16 11:21 runtime_log
[2026-01-16 11:21:46] -rw------- 1 boinc boinc   1198080 Jan 16 11:21 result.tar.gz
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 11:21 runtime_log.err
[2026-01-16 11:21:46] -rw------- 1 boinc boinc       651 Jan 16 11:21 IAzKDmJTM08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBUmKDml8MBfm.diag
[2026-01-16 11:21:46] -rw-rw-r-- 1 boinc boinc     22165 Jan 16 11:21 stderr.txt
[2026-01-16 11:21:46] HITS file was successfully produced:
[2026-01-16 11:21:46] -rw------- 1 boinc boinc 153031654 Jan 16 11:19 shared/HITS.pool.root.1
[2026-01-16 11:21:46]  *** Contents of shared directory: ***
[2026-01-16 11:21:46] total 737184
[2026-01-16 11:21:46] -rw-r--r-- 2 boinc boinc 600022504 Jan 16 09:46 ATLAS.root_0
[2026-01-16 11:21:46] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:46 start_atlas.sh
[2026-01-16 11:21:46] -rw-r--r-- 2 boinc boinc    592403 Jan 16 09:46 input.tar.gz
[2026-01-16 11:21:46] -rw------- 1 boinc boinc 153031654 Jan 16 11:19 HITS.pool.root.1
[2026-01-16 11:21:46] -rw------- 1 boinc boinc   1198080 Jan 16 11:21 result.tar.gz
11:21:47 (3679066): run_atlas exited; CPU time 30580.805594
11:21:47 (3679066): called boinc_finish(0)

</stderr_txt>
]]>

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