Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
18:14:16 (408974): wrapper (7.7.26015): starting
18:14:16 (408974): wrapper: running run_atlas (--nthreads 5)
[2026-01-14 18:14:16] Arguments: --nthreads 5
[2026-01-14 18:14:16] Threads: 5
[2026-01-14 18:14:16] Checking for CVMFS
[2026-01-14 18:14:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 18:14:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 18:14:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 18:14:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 18:14:20] 2.13.3.0 409183 0 29728 155151 3 1 4451604 10240001 0 130560 0 0 100.000 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2026-01-14 18:14:20] CVMFS is ok
[2026-01-14 18:14:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 18:14:20] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-14 18:14:20] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-14 18:14:20] Further information can be found at the LHC@home message board.
[2026-01-14 18:14:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 18:14:20] Checking for apptainer binary...
[2026-01-14 18:14:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 18:14:20] Running /usr/bin/apptainer --version
[2026-01-14 18:14:20] apptainer version 1.4.5
[2026-01-14 18:14:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 18:14:20] boinc-cte
[2026-01-14 18:14:20] apptainer works
[2026-01-14 18:14:20] Set ATHENA_PROC_NUMBER=5
[2026-01-14 18:14:20] Set ATHENA_CORE_NUMBER=5
[2026-01-14 18:14:20] Starting ATLAS job with PandaID=6969631037
[2026-01-14 18:14:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 19:02:52]  *** The last 200 lines of the pilot log: ***
[2026-01-14 19:02:52] 2026-01-15 03:02:00,480 | INFO     | summary of transferred files:
[2026-01-14 19:02:52] 2026-01-15 03:02:00,480 | INFO     |  -- lfn=log.48215263._033434.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 19:02:52] 2026-01-15 03:02:00,480 | INFO     | stage-out finished correctly
[2026-01-14 19:02:52] 2026-01-15 03:02:00,918 | INFO     | time since job start (2842s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:02,211 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 19:02:52] 2026-01-15 03:02:02,306 | INFO     | monitor loop #222: job 0:6969631037 is in state 'finished'
[2026-01-14 19:02:52] 2026-01-15 03:02:02,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 19:02:52] 2026-01-15 03:02:02,920 | INFO     | time since job start (2844s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:04,116 | INFO     | job 6969631037 has state=finished
[2026-01-14 19:02:52] 2026-01-15 03:02:04,116 | INFO     | preparing for final server update for job 6969631037 in state='finished'
[2026-01-14 19:02:52] 2026-01-15 03:02:04,117 | INFO     | this job has now completed (state=finished)
[2026-01-14 19:02:52] 2026-01-15 03:02:04,117 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 19:02:52] 2026-01-15 03:02:04,117 | INFO     | log transfer has been attempted: DONE
[2026-01-14 19:02:52] 2026-01-15 03:02:04,117 | INFO     | job 6969631037 has finished - writing final server update
[2026-01-14 19:02:52] 2026-01-15 03:02:04,117 | INFO     | total number of processed events: 400 (read)
[2026-01-14 19:02:52] 2026-01-15 03:02:04,118 | INFO     | executing command: lscpu
[2026-01-14 19:02:52] 2026-01-15 03:02:04,138 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 19:02:52] 2026-01-15 03:02:04,807 | INFO     | monitor loop #223: job 0:6969631037 is in state 'finished'
[2026-01-14 19:02:52] 2026-01-15 03:02:04,807 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 19:02:52] 2026-01-15 03:02:04,925 | INFO     | time since job start (2846s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:06,931 | INFO     | time since job start (2848s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:07,311 | INFO     | monitor loop #224: job 0:6969631037 is in state 'finished'
[2026-01-14 19:02:52] 2026-01-15 03:02:07,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 19:02:52] 2026-01-15 03:02:08,937 | INFO     | time since job start (2850s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:09,815 | INFO     | monitor loop #225: job 0:6969631037 is in state 'finished'
[2026-01-14 19:02:52] 2026-01-15 03:02:09,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 19:02:52] 2026-01-15 03:02:09,987 | INFO     | PID=413271 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 19:02:52] 2026-01-15 03:02:10,987 | INFO     | time since job start (2852s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:12,318 | INFO     | monitor loop #226: job 0:6969631037 is in state 'finished'
[2026-01-14 19:02:52] 2026-01-15 03:02:12,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 19:02:52] 2026-01-15 03:02:12,993 | INFO     | time since job start (2854s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:14,819 | INFO     | monitor loop #227: job 0:6969631037 is in state 'finished'
[2026-01-14 19:02:52] 2026-01-15 03:02:14,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 19:02:52] 2026-01-15 03:02:14,997 | INFO     | time since job start (2856s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:17,003 | INFO     | time since job start (2859s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:17,323 | INFO     | monitor loop #228: job 0:6969631037 is in state 'finished'
[2026-01-14 19:02:52] 2026-01-15 03:02:17,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 19:02:52] 2026-01-15 03:02:19,007 | INFO     | time since job start (2861s) is within the limit (349056.0s)
[2026-01-14 19:02:52] 2026-01-15 03:02:19,248 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 19:02:52] 2026-01-15 03:02:19,249 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3800.091
[2026-01-14 19:02:52] 2026-01-15 03:02:19,250 | INFO     | using path: /var/lib/boinc-client/slots/10/PanDA_Pilot-6969631037/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 19:02:52] 2026-01-15 03:02:19,250 | INFO     | extracted standard info from prmon json
[2026-01-14 19:02:52] 2026-01-15 03:02:19,250 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 19:02:52] 2026-01-15 03:02:19,250 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 19:02:52] 2026-01-15 03:02:19,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 19:02:52] 2026-01-15 03:02:19,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 19:02:52] 2026-01-15 03:02:19,251 | INFO     | fitting pss+swap vs Time
[2026-01-14 19:02:52] 2026-01-15 03:02:19,251 | INFO     | sum of square deviations: 19832930.0
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | sum of deviations: 442722444.99999994
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | mean x: 1768444798.5
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | mean y: 2567740.85
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | intersect: -39473707576.99019
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | chi2: 0.0003989640164032991
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | current memory leak: 22.32 B/s (using 40 data points, chi2=0.00)
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | could have reported an average CPU frequency of 3800 MHz (5 samples)
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | ..............................
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | . Timing measurements:
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | . get job = 0 s
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | . initial setup = 3 s
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | . payload setup = 5 s
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | . stage-in = 0 s
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | . payload execution = 2816 s
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | . stage-out = 0 s
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | . log creation = 0 s
[2026-01-14 19:02:52] 2026-01-15 03:02:19,252 | INFO     | ..............................
[2026-01-14 19:02:52] 2026-01-15 03:02:19,487 | INFO     | 
[2026-01-14 19:02:52] 2026-01-15 03:02:19,487 | INFO     | job summary report
[2026-01-14 19:02:52] 2026-01-15 03:02:19,487 | INFO     | --------------------------------------------------
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | PanDA job id: 6969631037
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | task id: 48215263
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | errors: (none)
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | pilot state: finished 
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | transexitcode: 0
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | exeerrorcode: 0
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | exeerrordiag: 
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | exitcode: 0
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | exitmsg: OK
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | cpuconsumptiontime: 13102 s
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | nevents: 400
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | neventsw: 0
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | pid: 419709
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | pgrp: 419709
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | corecount: 5
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | event service: False
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | sizes: {0: 2283988, 1: 2283988, 5: 2284278, 11: 2284306, 2825: 2309765, 2826: 2309764, 2827: 2318962, 2829: 2319018, 2846: 2319244}
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | --------------------------------------------------
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | 
[2026-01-14 19:02:52] 2026-01-15 03:02:19,488 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/10
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,502 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | job 6969631037 has completed (purged errors)
[2026-01-14 19:02:52] 2026-01-15 03:02:19,503 | INFO     | overall cleanup function is called
[2026-01-14 19:02:52] 2026-01-15 03:02:20,510 | INFO     | --- collectZombieJob: --- 10, [419709]
[2026-01-14 19:02:52] 2026-01-15 03:02:20,510 | INFO     | zombie collector waiting for pid 419709
[2026-01-14 19:02:52] 2026-01-15 03:02:20,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 19:02:52] 2026-01-15 03:02:20,510 | INFO     | collected zombie processes
[2026-01-14 19:02:52] 2026-01-15 03:02:20,510 | INFO     | will attempt to kill all subprocesses of pid=419709
[2026-01-14 19:02:52] 2026-01-15 03:02:20,549 | INFO     | process IDs to be killed: [419709] (in reverse order)
[2026-01-14 19:02:52] 2026-01-15 03:02:20,589 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 19:02:52] 2026-01-15 03:02:20,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 19:02:52] 2026-01-15 03:02:20,590 | INFO     | did not find any defunct processes belonging to 419709
[2026-01-14 19:02:52] 2026-01-15 03:02:20,591 | INFO     | did not find any defunct processes belonging to 419709
[2026-01-14 19:02:52] 2026-01-15 03:02:20,591 | INFO     | ready for new job
[2026-01-14 19:02:52] 2026-01-15 03:02:20,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 19:02:52] 2026-01-15 03:02:20,591 | INFO     | ***************************************
[2026-01-14 19:02:52] 2026-01-15 03:02:20,592 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 19:02:52] 2026-01-15 03:02:20,592 | INFO     | ***************************************
[2026-01-14 19:02:52] 2026-01-15 03:02:20,592 | INFO     | 
[2026-01-14 19:02:52] 2026-01-15 03:02:20,592 | INFO     | architecture information:
[2026-01-14 19:02:52] 2026-01-15 03:02:20,592 | INFO     | executing command: cat /etc/os-release
[2026-01-14 19:02:52] 2026-01-15 03:02:20,607 | INFO     | cat /etc/os-release:
[2026-01-14 19:02:52] NAME="CentOS Linux"
[2026-01-14 19:02:52] VERSION="7 (Core)"
[2026-01-14 19:02:52] ID="centos"
[2026-01-14 19:02:52] ID_LIKE="rhel fedora"
[2026-01-14 19:02:52] VERSION_ID="7"
[2026-01-14 19:02:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 19:02:52] ANSI_COLOR="0;31"
[2026-01-14 19:02:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 19:02:52] HOME_URL="https://www.centos.org/"
[2026-01-14 19:02:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 19:02:52] 
[2026-01-14 19:02:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 19:02:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 19:02:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 19:02:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 19:02:52] 
[2026-01-14 19:02:52] 2026-01-15 03:02:20,607 | INFO     | ***************************************
[2026-01-14 19:02:52] 2026-01-15 03:02:21,110 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/10
[2026-01-14 19:02:52] 2026-01-15 03:02:21,137 | INFO     | sufficient remaining disk space (41554018304 B)
[2026-01-14 19:02:52] 2026-01-15 03:02:21,137 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 19:02:52] 2026-01-15 03:02:21,138 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 19:02:52] 2026-01-15 03:02:21,138 | INFO     | update_server=False
[2026-01-14 19:02:52] 2026-01-15 03:02:21,138 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 19:02:52] 2026-01-15 03:02:21,138 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 19:02:52] 2026-01-15 03:02:21,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 19:02:52] 2026-01-15 03:02:21,139 | INFO     | aborting loop
[2026-01-14 19:02:52] 2026-01-15 03:02:21,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 19:02:52] 2026-01-15 03:02:21,406 | INFO     | all job control threads have been joined
[2026-01-14 19:02:52] 2026-01-15 03:02:21,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 19:02:52] 2026-01-15 03:02:22,140 | INFO     | [job] retrieve thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:22,143 | INFO     | [job] queue monitor thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:22,144 | INFO     | [job] job monitor thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:22,159 | INFO     | all data control threads have been joined
[2026-01-14 19:02:52] 2026-01-15 03:02:22,163 | INFO     | [payload] failed_post thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:22,200 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:22,260 | INFO     | all payload control threads have been joined
[2026-01-14 19:02:52] 2026-01-15 03:02:22,411 | INFO     | [job] control thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:22,492 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:22,713 | INFO     | [payload] validate_post thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:23,143 | INFO     | [data] copytool_out thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:23,165 | INFO     | [data] control thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:23,266 | INFO     | [payload] control thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:23,291 | INFO     | [data] copytool_in thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:23,534 | INFO     | [job] validate thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:23,597 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:25,792 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:31,391 | INFO     | job.realtimelogging is not enabled
[2026-01-14 19:02:52] 2026-01-15 03:02:32,395 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 19:02:52] 2026-01-15 03:02:42,621 | INFO     | [monitor] cgroup control has ended
[2026-01-14 19:02:52] 2026-01-15 03:02:44,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139710716884800)>', '<ExcThread(monitor, started 139709623813888)>']
[2026-01-14 19:02:52] 2026-01-15 03:02:49,281 | INFO     | all workflow threads have been joined
[2026-01-14 19:02:52] 2026-01-15 03:02:49,281 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 19:02:52] 2026-01-15 03:02:49,281 | INFO     | traces error code: 0
[2026-01-14 19:02:52] 2026-01-15 03:02:49,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 19:02:52] 2026-01-15 03:02:52,148 | INFO     | PID=413271 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 19:02:52] 2026-01-15 03:02:52,149 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 19:02:52] 2026-01-15 03:02:52,149 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 19:02:52] 2026-01-15 03:02:52,149 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 19:02:52] 2026-01-15 03:02:52,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 19:02:52] 2026-01-15 03:02:52,149 | INFO     | [monitor] control thread has ended
[2026-01-14 19:02:52] 2026-01-15 03:02:52,235 [wrapper] ==== pilot stdout END ====
[2026-01-14 19:02:52] 2026-01-15 03:02:52,238 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 19:02:52] 2026-01-15 03:02:52,240 [wrapper] pilotpid: 413271
[2026-01-14 19:02:52] 2026-01-15 03:02:52,242 [wrapper] Pilot exit status: 0
[2026-01-14 19:02:52] 2026-01-15 03:02:52,255 [wrapper] pandaids: 6969631037
[2026-01-14 19:02:52] 2026-01-15 03:02:52,277 [wrapper] cleanup supervisor_pilot  428650 413272
[2026-01-14 19:02:52] 2026-01-15 03:02:52,281 [wrapper] Test setup, not cleaning
[2026-01-14 19:02:52] 2026-01-15 03:02:52,284 [wrapper] apfmon messages muted
[2026-01-14 19:02:52] 2026-01-15 03:02:52,286 [wrapper] ==== wrapper stdout END ====
[2026-01-14 19:02:52] 2026-01-15 03:02:52,293 [wrapper] ==== wrapper stderr END ====
[2026-01-14 19:02:52]  *** Error codes and diagnostics ***
[2026-01-14 19:02:52]     "exeErrorCode": 0,
[2026-01-14 19:02:52]     "exeErrorDiag": "",
[2026-01-14 19:02:52]     "pilotErrorCode": 0,
[2026-01-14 19:02:52]     "pilotErrorDiag": "",
[2026-01-14 19:02:52]  *** Listing of results directory ***
[2026-01-14 19:02:52] total 733236
[2026-01-14 19:02:52] -rwx------ 1 boinc boinc     36322 Jan 14 12:15 runpilot2-wrapper.sh
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc      5112 Jan 14 12:15 queuedata.json
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc    579449 Jan 14 12:15 pilot3.tar.gz
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc       100 Jan 14 18:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 19:02:52] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 18:14 run_atlas
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc       105 Jan 14 18:14 job.xml
[2026-01-14 19:02:52] -rw-r--r-- 2 boinc boinc     15847 Jan 14 18:14 start_atlas.sh
[2026-01-14 19:02:52] drwxrwx--x 2 boinc boinc      4096 Jan 14 18:14 shared
[2026-01-14 19:02:52] -rw-r--r-- 2 boinc boinc    592398 Jan 14 18:14 input.tar.gz
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc      6590 Jan 14 18:14 init_data.xml
[2026-01-14 19:02:52] -rw-r--r-- 2 boinc boinc 594264448 Jan 14 18:14 EVNT.32794306._001337.pool.root.1
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc         0 Jan 14 18:14 boinc_lockfile
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc      2509 Jan 14 18:14 pandaJob.out
[2026-01-14 19:02:52] -rw------- 1 boinc boinc    999480 Jan 14 18:14 agis_schedconf.cvmfs.json
[2026-01-14 19:02:52] -rw------- 1 boinc boinc   1516246 Jan 14 18:14 agis_ddmendpoints.agis.ALL.json
[2026-01-14 19:02:52] drwx------ 5 boinc boinc      4096 Jan 14 18:14 pilot3
[2026-01-14 19:02:52] -rw------- 1 boinc boinc 151266850 Jan 14 19:01 HITS.48215263._033434.pool.root.1
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc       530 Jan 14 19:01 boinc_task_state.xml
[2026-01-14 19:02:52] -rw------- 1 boinc boinc      1023 Jan 14 19:01 memory_monitor_summary.json
[2026-01-14 19:02:52] -rw------- 1 boinc boinc    245257 Jan 14 19:02 log.48215263._033434.job.log.tgz.1
[2026-01-14 19:02:52] -rw------- 1 boinc boinc      7749 Jan 14 19:02 heartbeat.json
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc        27 Jan 14 19:02 wrapper_checkpoint.txt
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc      8192 Jan 14 19:02 boinc_mmap_file
[2026-01-14 19:02:52] -rw------- 1 boinc boinc       746 Jan 14 19:02 pilotlog.txt
[2026-01-14 19:02:52] -rw------- 1 boinc boinc        95 Jan 14 19:02 pilot_heartbeat.json
[2026-01-14 19:02:52] -rw------- 1 boinc boinc    446223 Jan 14 19:02 log.48215263._033434.job.log.1
[2026-01-14 19:02:52] -rw------- 1 boinc boinc       357 Jan 14 19:02 output.list
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc       620 Jan 14 19:02 runtime_log
[2026-01-14 19:02:52] -rw------- 1 boinc boinc    706560 Jan 14 19:02 result.tar.gz
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc      8935 Jan 14 19:02 runtime_log.err
[2026-01-14 19:02:52] -rw------- 1 boinc boinc       644 Jan 14 19:02 hoNLDmWSM08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHNmKDm47mZgm.diag
[2026-01-14 19:02:52] -rw-r--r-- 1 boinc boinc     22350 Jan 14 19:02 stderr.txt
[2026-01-14 19:02:52] HITS file was successfully produced:
[2026-01-14 19:02:52] -rw------- 1 boinc boinc 151266850 Jan 14 19:01 shared/HITS.pool.root.1
[2026-01-14 19:02:52]  *** Contents of shared directory: ***
[2026-01-14 19:02:52] total 729360
[2026-01-14 19:02:52] -rw-r--r-- 2 boinc boinc     15847 Jan 14 18:14 start_atlas.sh
[2026-01-14 19:02:52] -rw-r--r-- 2 boinc boinc    592398 Jan 14 18:14 input.tar.gz
[2026-01-14 19:02:52] -rw-r--r-- 2 boinc boinc 594264448 Jan 14 18:14 ATLAS.root_0
[2026-01-14 19:02:52] -rw------- 1 boinc boinc 151266850 Jan 14 19:01 HITS.pool.root.1
[2026-01-14 19:02:52] -rw------- 1 boinc boinc    706560 Jan 14 19:02 result.tar.gz
19:02:54 (408974): run_atlas exited; CPU time 13115.284968
19:02:54 (408974): called boinc_finish(0)

</stderr_txt>
]]>

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