Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:06:24 (604885): wrapper (7.7.26015): starting
04:06:24 (604885): wrapper: running run_atlas (--nthreads 3)
[2026-01-19 04:06:24] Arguments: --nthreads 3
[2026-01-19 04:06:24] Threads: 3
[2026-01-19 04:06:24] Checking for CVMFS
[2026-01-19 04:06:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-19 04:06:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-19 04:06:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-19 04:06:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-19 04:06:25] 2.12.7.0 1189665 16537 70128 155298 1 61 4985608 6144000 917 130560 1 10468838 99.923 1100221 1821 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2026-01-19 04:06:25] CVMFS is ok
[2026-01-19 04:06:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-19 04:06:25] Checking for apptainer binary...
[2026-01-19 04:06:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-19 04:06:25] Running /usr/bin/apptainer --version
[2026-01-19 04:06:25] apptainer version 1.4.5
[2026-01-19 04:06:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-19 04:06:25] Beta
[2026-01-19 04:06:25] apptainer works
[2026-01-19 04:06:25] Set ATHENA_PROC_NUMBER=3
[2026-01-19 04:06:25] Set ATHENA_CORE_NUMBER=3
[2026-01-19 04:06:25] Starting ATLAS job with PandaID=6969632820
[2026-01-19 04:06:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-19 05:42:44]  *** The last 200 lines of the pilot log: ***
[2026-01-19 05:42:44]  protocol_id=None
[2026-01-19 05:42:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-19 05:42:44]  replicas=None
[2026-01-19 05:42:44]  scope=mc23_13p6TeV
[2026-01-19 05:42:44]  status=None
[2026-01-19 05:42:44]  status_code=0
[2026-01-19 05:42:44]  storage_token=
[2026-01-19 05:42:44]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6969632820/log.48215263._034375.job.log.tgz.1
[2026-01-19 05:42:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/b0/log.48215263._034375.job.log.tgz.1
[2026-01-19 05:42:44]  workdir=None
[2026-01-19 05:42:44] ]
[2026-01-19 05:42:44] 2026-01-19 04:41:39,465 | INFO     | transferring file log.48215263._034375.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6969632820/log.48215263._034375.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-19 05:42:44] 2026-01-19 04:41:39,465 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6969632820/log.48215263._034375.job.log.tgz.1 /var/lib/boinc/slots/1/log.48215263._034375.job
[2026-01-19 05:42:44] 2026-01-19 04:41:39,474 | INFO     | adding to output.list: log.48215263._034375.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/b0/log.48215263._034375.job.log.tg
[2026-01-19 05:42:44] 2026-01-19 04:41:39,475 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-19 05:42:44] 2026-01-19 04:41:39,475 | INFO     | summary of transferred files:
[2026-01-19 05:42:44] 2026-01-19 04:41:39,475 | INFO     |  -- lfn=log.48215263._034375.job.log.tgz.1, status_code=0, status=transferred
[2026-01-19 05:42:44] 2026-01-19 04:41:39,475 | INFO     | stage-out finished correctly
[2026-01-19 05:42:44] 2026-01-19 04:41:40,305 | INFO     | time since job start (5710s) is within the limit (349056.0s)
[2026-01-19 05:42:44] 2026-01-19 04:41:41,388 | INFO     | monitor loop #437: job 0:6969632820 is in state 'finished'
[2026-01-19 05:42:44] 2026-01-19 04:41:41,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-19 05:42:44] 2026-01-19 04:41:41,796 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-19 05:42:44] 2026-01-19 04:41:42,311 | INFO     | time since job start (5712s) is within the limit (349056.0s)
[2026-01-19 05:42:44] 2026-01-19 04:41:43,225 | INFO     | job 6969632820 has state=finished
[2026-01-19 05:42:44] 2026-01-19 04:41:43,225 | INFO     | preparing for final server update for job 6969632820 in state='finished'
[2026-01-19 05:42:44] 2026-01-19 04:41:43,226 | INFO     | this job has now completed (state=finished)
[2026-01-19 05:42:44] 2026-01-19 04:41:43,226 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-19 05:42:44] 2026-01-19 04:41:43,226 | INFO     | log transfer has been attempted: DONE
[2026-01-19 05:42:44] 2026-01-19 04:41:43,226 | INFO     | job 6969632820 has finished - writing final server update
[2026-01-19 05:42:44] 2026-01-19 04:41:43,226 | INFO     | total number of processed events: 400 (read)
[2026-01-19 05:42:44] 2026-01-19 04:41:43,227 | INFO     | executing command: lscpu
[2026-01-19 05:42:44] 2026-01-19 04:41:43,240 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-19 05:42:44] 2026-01-19 04:41:43,392 | INFO     | PID=608589 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-19 05:42:44] 2026-01-19 04:41:43,392 | INFO     | .. there are 2 such processes running
[2026-01-19 05:42:44] 2026-01-19 04:41:43,892 | INFO     | monitor loop #438: job 0:6969632820 is in state 'finished'
[2026-01-19 05:42:44] 2026-01-19 04:41:43,892 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-19 05:42:44] 2026-01-19 04:41:44,392 | INFO     | time since job start (5714s) is within the limit (349056.0s)
[2026-01-19 05:42:44] 2026-01-19 04:41:45,559 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-19 05:42:44] 2026-01-19 04:41:45,561 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3700.0697499999997
[2026-01-19 05:42:44] 2026-01-19 04:41:45,562 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6969632820/memory_monitor_summary.json (trf name=prmon)
[2026-01-19 05:42:44] 2026-01-19 04:41:45,563 | INFO     | extracted standard info from prmon json
[2026-01-19 05:42:44] 2026-01-19 04:41:45,563 | INFO     | extracted standard memory fields from prmon json
[2026-01-19 05:42:44] 2026-01-19 04:41:45,563 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-19 05:42:44] 2026-01-19 04:41:45,563 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-19 05:42:44] 2026-01-19 04:41:45,563 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-19 05:42:44] 2026-01-19 04:41:45,564 | INFO     | fitting pss+swap vs Time
[2026-01-19 05:42:44] 2026-01-19 04:41:45,565 | INFO     | sum of square deviations: 204163828.0
[2026-01-19 05:42:44] 2026-01-19 04:41:45,565 | INFO     | sum of deviations: 582268668.0
[2026-01-19 05:42:44] 2026-01-19 04:41:45,565 | INFO     | mean x: 1768794937.0
[2026-01-19 05:42:44] 2026-01-19 04:41:45,565 | INFO     | mean y: 2348010.7126436783
[2026-01-19 05:42:44] 2026-01-19 04:41:45,565 | INFO     | intersect: -5042198234.433846
[2026-01-19 05:42:44] 2026-01-19 04:41:45,565 | INFO     | chi2: 0.011414585489129835
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | current memory leak: 2.85 B/s (using 87 data points, chi2=0.01)
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | could have reported an average CPU frequency of 3700 MHz (7 samples)
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | ..............................
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | . Timing measurements:
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | . get job = 0 s
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | . initial setup = 1 s
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | . payload setup = 2 s
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | . stage-in = 0 s
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | . payload execution = 5688 s
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | . stage-out = 0 s
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | . log creation = 0 s
[2026-01-19 05:42:44] 2026-01-19 04:41:45,566 | INFO     | ..............................
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | 
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | job summary report
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | --------------------------------------------------
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | PanDA job id: 6969632820
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | task id: 48215263
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | errors: (none)
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | pilot state: finished 
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | transexitcode: 0
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | exeerrorcode: 0
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | exeerrordiag: 
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | exitcode: 0
[2026-01-19 05:42:44] 2026-01-19 04:41:45,623 | INFO     | exitmsg: OK
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | cpuconsumptiontime: 16735 s
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | nevents: 400
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | neventsw: 0
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | pid: 615009
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | pgrp: 615009
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | corecount: 3
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | event service: False
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | sizes: {0: 2283951, 2: 2284213, 11: 2284241, 5695: 2310960, 5696: 2319958, 5698: 2320014, 5702: 2320336}
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | --------------------------------------------------
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | 
[2026-01-19 05:42:44] 2026-01-19 04:41:45,624 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-01-19 05:42:44] 2026-01-19 04:41:45,635 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,636 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,637 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,637 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,637 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-19 05:42:44] 2026-01-19 04:41:45,637 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,637 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-19 05:42:44] 2026-01-19 04:41:45,637 | INFO     | job 6969632820 has completed (purged errors)
[2026-01-19 05:42:44] 2026-01-19 04:41:45,637 | INFO     | overall cleanup function is called
[2026-01-19 05:42:44] 2026-01-19 04:41:46,640 | INFO     | --- collectZombieJob: --- 10, [615009]
[2026-01-19 05:42:44] 2026-01-19 04:41:46,640 | INFO     | zombie collector waiting for pid 615009
[2026-01-19 05:42:44] 2026-01-19 04:41:46,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-19 05:42:44] 2026-01-19 04:41:46,640 | INFO     | collected zombie processes
[2026-01-19 05:42:44] 2026-01-19 04:41:46,640 | INFO     | will attempt to kill all subprocesses of pid=615009
[2026-01-19 05:42:44] 2026-01-19 04:41:46,707 | INFO     | process IDs to be killed: [615009] (in reverse order)
[2026-01-19 05:42:44] 2026-01-19 04:41:46,729 | WARNING  | found no corresponding commands to process id(s)
[2026-01-19 05:42:44] 2026-01-19 04:41:46,730 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-19 05:42:44] 2026-01-19 04:41:46,732 | INFO     | did not find any defunct processes belonging to 615009
[2026-01-19 05:42:44] 2026-01-19 04:41:46,734 | INFO     | did not find any defunct processes belonging to 615009
[2026-01-19 05:42:44] 2026-01-19 04:41:46,734 | INFO     | ready for new job
[2026-01-19 05:42:44] 2026-01-19 04:41:46,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-19 05:42:44] 2026-01-19 04:41:46,736 | INFO     | ***************************************
[2026-01-19 05:42:44] 2026-01-19 04:41:46,736 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-19 05:42:44] 2026-01-19 04:41:46,736 | INFO     | ***************************************
[2026-01-19 05:42:44] 2026-01-19 04:41:46,736 | INFO     | 
[2026-01-19 05:42:44] 2026-01-19 04:41:46,736 | INFO     | architecture information:
[2026-01-19 05:42:44] 2026-01-19 04:41:46,736 | INFO     | executing command: cat /etc/os-release
[2026-01-19 05:42:44] 2026-01-19 04:41:46,745 | INFO     | cat /etc/os-release:
[2026-01-19 05:42:44] NAME="CentOS Linux"
[2026-01-19 05:42:44] VERSION="7 (Core)"
[2026-01-19 05:42:44] ID="centos"
[2026-01-19 05:42:44] ID_LIKE="rhel fedora"
[2026-01-19 05:42:44] VERSION_ID="7"
[2026-01-19 05:42:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-19 05:42:44] ANSI_COLOR="0;31"
[2026-01-19 05:42:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-19 05:42:44] HOME_URL="https://www.centos.org/"
[2026-01-19 05:42:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-19 05:42:44] 
[2026-01-19 05:42:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-19 05:42:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-19 05:42:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-19 05:42:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-19 05:42:44] 
[2026-01-19 05:42:44] 2026-01-19 04:41:46,745 | INFO     | ***************************************
[2026-01-19 05:42:44] 2026-01-19 04:41:47,248 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-01-19 05:42:44] 2026-01-19 04:41:47,258 | INFO     | sufficient remaining disk space (264509587456 B)
[2026-01-19 05:42:44] 2026-01-19 04:41:47,259 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-19 05:42:44] 2026-01-19 04:41:47,259 | INFO     | current server update state: UPDATING_FINAL
[2026-01-19 05:42:44] 2026-01-19 04:41:47,259 | INFO     | update_server=False
[2026-01-19 05:42:44] 2026-01-19 04:41:47,259 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-19 05:42:44] 2026-01-19 04:41:47,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-19 05:42:44] 2026-01-19 04:41:47,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-19 05:42:44] 2026-01-19 04:41:47,400 | INFO     | aborting loop
[2026-01-19 05:42:44] 2026-01-19 04:41:47,529 | INFO     | all payload control threads have been joined
[2026-01-19 05:42:44] 2026-01-19 04:41:47,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-19 05:42:44] 2026-01-19 04:41:47,835 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-19 05:42:44] 2026-01-19 04:41:47,975 | INFO     | all job control threads have been joined
[2026-01-19 05:42:44] 2026-01-19 04:41:48,194 | INFO     | all data control threads have been joined
[2026-01-19 05:42:44] 2026-01-19 04:41:48,262 | INFO     | [job] retrieve thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:48,264 | INFO     | [job] queue monitor thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:48,405 | INFO     | [job] job monitor thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:48,533 | INFO     | [payload] control thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:48,718 | INFO     | [job] validate thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:48,732 | INFO     | [job] create_data_payload thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:48,784 | INFO     | [payload] validate_post thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:48,899 | INFO     | [payload] validate_pre thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:48,980 | INFO     | [job] control thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:49,164 | INFO     | [payload] failed_post thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:49,198 | INFO     | [data] control thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:49,512 | INFO     | [data] copytool_in thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:49,535 | INFO     | [data] copytool_out thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:49,655 | INFO     | [payload] execute_payloads thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:51,840 | INFO     | [data] queue_monitor thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:41:57,870 | INFO     | job.realtimelogging is not enabled
[2026-01-19 05:42:44] 2026-01-19 04:41:58,875 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-19 05:42:44] 2026-01-19 04:42:17,560 | INFO     | PID=608589 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-19 05:42:44] 2026-01-19 04:42:17,560 | INFO     | .. there are 2 such processes running
[2026-01-19 05:42:44] 2026-01-19 04:42:17,561 | INFO     | found 0 job(s) in 20 queues
[2026-01-19 05:42:44] 2026-01-19 04:42:17,561 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-19 05:42:44] 2026-01-19 04:42:17,561 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-19 05:42:44] 2026-01-19 04:42:39,253 | INFO     | [monitor] cgroup control has ended
[2026-01-19 05:42:44] 2026-01-19 04:42:39,851 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139627760760640)>', '<ExcThread(monitor, started 139627256059648)>']
[2026-01-19 05:42:44] 2026-01-19 04:42:40,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-19 05:42:44] 2026-01-19 04:42:40,664 | INFO     | [monitor] control thread has ended
[2026-01-19 05:42:44] 2026-01-19 04:42:44,854 | INFO     | all workflow threads have been joined
[2026-01-19 05:42:44] 2026-01-19 04:42:44,854 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-19 05:42:44] 2026-01-19 04:42:44,854 | INFO     | traces error code: 0
[2026-01-19 05:42:44] 2026-01-19 04:42:44,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-19 05:42:44] 2026-01-19 04:42:44,914 [wrapper] ==== pilot stdout END ====
[2026-01-19 05:42:44] 2026-01-19 04:42:44,915 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-19 05:42:44] 2026-01-19 04:42:44,917 [wrapper] pilotpid: 608589
[2026-01-19 05:42:44] 2026-01-19 04:42:44,918 [wrapper] Pilot exit status: 0
[2026-01-19 05:42:44] 2026-01-19 04:42:44,923 [wrapper] pandaids: 6969632820
[2026-01-19 05:42:44] 2026-01-19 04:42:44,938 [wrapper] cleanup supervisor_pilot  675046 608590
[2026-01-19 05:42:44] 2026-01-19 04:42:44,940 [wrapper] Test setup, not cleaning
[2026-01-19 05:42:44] 2026-01-19 04:42:44,941 [wrapper] apfmon messages muted
[2026-01-19 05:42:44] 2026-01-19 04:42:44,943 [wrapper] ==== wrapper stdout END ====
[2026-01-19 05:42:44] 2026-01-19 04:42:44,944 [wrapper] ==== wrapper stderr END ====
[2026-01-19 05:42:44]  *** Error codes and diagnostics ***
[2026-01-19 05:42:44]     "exeErrorCode": 0,
[2026-01-19 05:42:44]     "exeErrorDiag": "",
[2026-01-19 05:42:44]     "pilotErrorCode": 0,
[2026-01-19 05:42:44]     "pilotErrorDiag": "",
[2026-01-19 05:42:44]  *** Listing of results directory ***
[2026-01-19 05:42:44] insgesamt 733668
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc      5112 14. Jan 21:15 queuedata.json
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc    579449 14. Jan 21:15 pilot3.tar.gz
[2026-01-19 05:42:44] -rwx------ 1 boinc boinc     36322 14. Jan 21:16 runpilot2-wrapper.sh
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc       100 19. Jan 04:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-19 05:42:44] -rwxr-xr-x 1 boinc boinc      7986 19. Jan 04:06 run_atlas
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc       105 19. Jan 04:06 job.xml
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc      6741 19. Jan 04:06 init_data.xml
[2026-01-19 05:42:44] -rw-r--r-- 2 boinc boinc 593221647 19. Jan 04:06 EVNT.32794306._001374.pool.root.1
[2026-01-19 05:42:44] drwxrwx--x 2 boinc boinc      4096 19. Jan 04:06 shared
[2026-01-19 05:42:44] -rw-r--r-- 2 boinc boinc    592403 19. Jan 04:06 input.tar.gz
[2026-01-19 05:42:44] -rw-r--r-- 2 boinc boinc     15847 19. Jan 04:06 start_atlas.sh
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc         0 19. Jan 04:06 boinc_lockfile
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc      2508 19. Jan 04:06 pandaJob.out
[2026-01-19 05:42:44] -rw------- 1 boinc boinc        52 19. Jan 04:06 setup.sh.local
[2026-01-19 05:42:44] -rw------- 1 boinc boinc   1004117 19. Jan 04:06 agis_schedconf.cvmfs.json
[2026-01-19 05:42:44] -rw------- 1 boinc boinc   1516246 19. Jan 04:06 agis_ddmendpoints.agis.ALL.json
[2026-01-19 05:42:44] drwx------ 5 boinc boinc      4096 19. Jan 04:06 pilot3
[2026-01-19 05:42:44] -rw------- 1 boinc boinc 151881747 19. Jan 05:41 HITS.48215263._034375.pool.root.1
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc       530 19. Jan 05:41 boinc_task_state.xml
[2026-01-19 05:42:44] -rw------- 1 boinc boinc      1015 19. Jan 05:41 memory_monitor_summary.json
[2026-01-19 05:42:44] -rw------- 1 boinc boinc    273462 19. Jan 05:41 log.48215263._034375.job.log.tgz.1
[2026-01-19 05:42:44] -rw------- 1 boinc boinc      7745 19. Jan 05:41 heartbeat.json
[2026-01-19 05:42:44] -rw------- 1 boinc boinc        95 19. Jan 05:42 pilot_heartbeat.json
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc      8192 19. Jan 05:42 boinc_mmap_file
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc        27 19. Jan 05:42 wrapper_checkpoint.txt
[2026-01-19 05:42:44] -rw------- 1 boinc boinc      4895 19. Jan 05:42 pilotlog.txt
[2026-01-19 05:42:44] -rw------- 1 boinc boinc    844979 19. Jan 05:42 log.48215263._034375.job.log.1
[2026-01-19 05:42:44] -rw------- 1 boinc boinc       357 19. Jan 05:42 output.list
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc       620 19. Jan 05:42 runtime_log
[2026-01-19 05:42:44] -rw------- 1 boinc boinc   1136640 19. Jan 05:42 result.tar.gz
[2026-01-19 05:42:44] -rw------- 1 boinc boinc       639 19. Jan 05:42 wqwLDmITM08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRTmKDmdm8tAo.diag
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc      9259 19. Jan 05:42 runtime_log.err
[2026-01-19 05:42:44] -rw-r--r-- 1 boinc boinc     21547 19. Jan 05:42 stderr.txt
[2026-01-19 05:42:44] HITS file was successfully produced:
[2026-01-19 05:42:44] -rw------- 1 boinc boinc 151881747 19. Jan 05:41 shared/HITS.pool.root.1
[2026-01-19 05:42:44]  *** Contents of shared directory: ***
[2026-01-19 05:42:44] insgesamt 729360
[2026-01-19 05:42:44] -rw-r--r-- 2 boinc boinc 593221647 19. Jan 04:06 ATLAS.root_0
[2026-01-19 05:42:44] -rw-r--r-- 2 boinc boinc    592403 19. Jan 04:06 input.tar.gz
[2026-01-19 05:42:44] -rw-r--r-- 2 boinc boinc     15847 19. Jan 04:06 start_atlas.sh
[2026-01-19 05:42:44] -rw------- 1 boinc boinc 151881747 19. Jan 05:41 HITS.pool.root.1
[2026-01-19 05:42:44] -rw------- 1 boinc boinc   1136640 19. Jan 05:42 result.tar.gz
05:42:46 (604885): run_atlas exited; CPU time 16800.593956
05:42:46 (604885): called boinc_finish(0)

</stderr_txt>
]]>

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