Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:00:18 (3479037): wrapper (7.7.26015): starting
09:00:18 (3479037): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 09:00:18] Arguments: --nthreads 12
[2026-01-16 09:00:18] Threads: 12
[2026-01-16 09:00:18] Checking for CVMFS
[2026-01-16 09:00:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 09:00:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 09:00:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 09:00:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 09:00:20] 2.13.3.0 40677 10268 74344 155201 2 236 3989456 4096000 19590 130560 0 81786858 99.981 1145039 231 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 09:00:20] CVMFS is ok
[2026-01-16 09:00:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 09:00:20] Checking for apptainer binary...
[2026-01-16 09:00:20] apptainer is not installed, using version from CVMFS
[2026-01-16 09:00:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 09:00:22] epyc7v12
[2026-01-16 09:00:22] apptainer works
[2026-01-16 09:00:22] Set ATHENA_PROC_NUMBER=12
[2026-01-16 09:00:22] Set ATHENA_CORE_NUMBER=12
[2026-01-16 09:00:22] Starting ATLAS job with PandaID=6969632384
[2026-01-16 09:00:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31426/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 10:36:26]  *** The last 200 lines of the pilot log: ***
[2026-01-16 10:36:26] 2026-01-16 10:35:36,449 | INFO     |  -- lfn=log.48215263._033957.job.log.tgz.1, status_code=0, status=transferred
[2026-01-16 10:36:26] 2026-01-16 10:35:36,449 | INFO     | stage-out finished correctly
[2026-01-16 10:36:26] 2026-01-16 10:35:36,555 | INFO     | monitor loop #371: job 0:6969632384 is in state 'finished'
[2026-01-16 10:36:26] 2026-01-16 10:35:36,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:36:26] 2026-01-16 10:35:36,686 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 10:36:26] 2026-01-16 10:35:37,409 | INFO     | time since job start (5684s) is within the limit (349056.0s)
[2026-01-16 10:36:26] 2026-01-16 10:35:38,531 | INFO     | job 6969632384 has state=finished
[2026-01-16 10:36:26] 2026-01-16 10:35:38,531 | INFO     | preparing for final server update for job 6969632384 in state='finished'
[2026-01-16 10:36:26] 2026-01-16 10:35:38,532 | INFO     | this job has now completed (state=finished)
[2026-01-16 10:36:26] 2026-01-16 10:35:38,532 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 10:36:26] 2026-01-16 10:35:38,532 | INFO     | log transfer has been attempted: DONE
[2026-01-16 10:36:26] 2026-01-16 10:35:38,532 | INFO     | job 6969632384 has finished - writing final server update
[2026-01-16 10:36:26] 2026-01-16 10:35:38,533 | INFO     | total number of processed events: 400 (read)
[2026-01-16 10:36:26] 2026-01-16 10:35:38,538 | INFO     | executing command: lscpu
[2026-01-16 10:36:26] 2026-01-16 10:35:38,674 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 10:36:26] 2026-01-16 10:35:39,063 | INFO     | monitor loop #372: job 0:6969632384 is in state 'finished'
[2026-01-16 10:36:26] 2026-01-16 10:35:39,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:36:26] 2026-01-16 10:35:39,415 | INFO     | time since job start (5686s) is within the limit (349056.0s)
[2026-01-16 10:36:26] 2026-01-16 10:35:41,423 | INFO     | time since job start (5688s) is within the limit (349056.0s)
[2026-01-16 10:36:26] 2026-01-16 10:35:41,566 | INFO     | monitor loop #373: job 0:6969632384 is in state 'finished'
[2026-01-16 10:36:26] 2026-01-16 10:35:41,566 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:36:26] 2026-01-16 10:35:43,431 | INFO     | time since job start (5690s) is within the limit (349056.0s)
[2026-01-16 10:36:26] 2026-01-16 10:35:44,070 | INFO     | monitor loop #374: job 0:6969632384 is in state 'finished'
[2026-01-16 10:36:26] 2026-01-16 10:35:44,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:36:26] 2026-01-16 10:35:45,436 | INFO     | time since job start (5692s) is within the limit (349056.0s)
[2026-01-16 10:36:26] 2026-01-16 10:35:46,575 | INFO     | monitor loop #375: job 0:6969632384 is in state 'finished'
[2026-01-16 10:36:26] 2026-01-16 10:35:46,575 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:36:26] 2026-01-16 10:35:47,441 | INFO     | time since job start (5694s) is within the limit (349056.0s)
[2026-01-16 10:36:26] 2026-01-16 10:35:49,078 | INFO     | monitor loop #376: job 0:6969632384 is in state 'finished'
[2026-01-16 10:36:26] 2026-01-16 10:35:49,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:36:26] 2026-01-16 10:35:49,446 | INFO     | time since job start (5696s) is within the limit (349056.0s)
[2026-01-16 10:36:26] 2026-01-16 10:35:51,584 | INFO     | monitor loop #377: job 0:6969632384 is in state 'finished'
[2026-01-16 10:36:26] 2026-01-16 10:35:51,584 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 10:36:26] 2026-01-16 10:35:51,980 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 10:36:26] 2026-01-16 10:35:52,026 | INFO     | PID=3483232 has CPU usage=14.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-16 10:36:26] 2026-01-16 10:35:52,034 | INFO     | .. there are 22 such processes running
[2026-01-16 10:36:26] 2026-01-16 10:35:52,037 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2400.8945859375003
[2026-01-16 10:36:26] 2026-01-16 10:35:52,092 | INFO     | using path: /opt/boinc/instance_homes/boinc_31426/slots/1/PanDA_Pilot-6969632384/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 10:36:26] 2026-01-16 10:35:52,093 | INFO     | extracted standard info from prmon json
[2026-01-16 10:36:26] 2026-01-16 10:35:52,093 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 10:36:26] 2026-01-16 10:35:52,093 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 10:36:26] 2026-01-16 10:35:52,093 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 10:36:26] 2026-01-16 10:35:52,094 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 10:36:26] 2026-01-16 10:35:52,096 | INFO     | fitting pss+swap vs Time
[2026-01-16 10:36:26] 2026-01-16 10:35:52,096 | INFO     | sum of square deviations: 190403570.0
[2026-01-16 10:36:26] 2026-01-16 10:35:52,096 | INFO     | sum of deviations: 4670742915.999999
[2026-01-16 10:36:26] 2026-01-16 10:35:52,097 | INFO     | mean x: 1768556990.0
[2026-01-16 10:36:26] 2026-01-16 10:35:52,097 | INFO     | mean y: 2695459.9529411765
[2026-01-16 10:36:26] 2026-01-16 10:35:52,097 | INFO     | intersect: -43381338949.616066
[2026-01-16 10:36:26] 2026-01-16 10:35:52,101 | INFO     | chi2: 0.10865799877806458
[2026-01-16 10:36:26] 2026-01-16 10:35:52,101 | INFO     | current memory leak: 24.53 B/s (using 85 data points, chi2=0.11)
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | could have reported an average CPU frequency of 2390 MHz (7 samples)
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | ..............................
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | . Timing measurements:
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | . get job = 0 s
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | . initial setup = 2 s
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | . payload setup = 17 s
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | . stage-in = 0 s
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | . payload execution = 5622 s
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | . stage-out = 1 s
[2026-01-16 10:36:26] 2026-01-16 10:35:52,102 | INFO     | . log creation = 0 s
[2026-01-16 10:36:26] 2026-01-16 10:35:52,103 | INFO     | ..............................
[2026-01-16 10:36:26] 2026-01-16 10:35:52,613 | INFO     | 
[2026-01-16 10:36:26] 2026-01-16 10:35:52,613 | INFO     | job summary report
[2026-01-16 10:36:26] 2026-01-16 10:35:52,613 | INFO     | --------------------------------------------------
[2026-01-16 10:36:26] 2026-01-16 10:35:52,613 | INFO     | PanDA job id: 6969632384
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | task id: 48215263
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | errors: (none)
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | pilot state: finished 
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | transexitcode: 0
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | exeerrorcode: 0
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | exeerrordiag: 
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | exitcode: 0
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | exitmsg: OK
[2026-01-16 10:36:26] 2026-01-16 10:35:52,614 | INFO     | cpuconsumptiontime: 31629 s
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | nevents: 400
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | neventsw: 0
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | pid: 3490531
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | pgrp: 3490531
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | corecount: 12
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | event service: False
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | sizes: {0: 2283802, 1: 2284001, 12: 2284001, 15: 2284291, 23: 2284319, 5644: 2311289, 5646: 2320389, 5662: 2320527}
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | --------------------------------------------------
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | 
[2026-01-16 10:36:26] 2026-01-16 10:35:52,615 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31426/slots/1
[2026-01-16 10:36:26] 2026-01-16 10:35:52,676 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,677 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,677 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,677 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,677 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,677 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,677 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,677 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,678 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,680 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 10:36:26] 2026-01-16 10:35:52,681 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,681 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 10:36:26] 2026-01-16 10:35:52,681 | INFO     | job 6969632384 has completed (purged errors)
[2026-01-16 10:36:26] 2026-01-16 10:35:52,683 | INFO     | overall cleanup function is called
[2026-01-16 10:36:26] 2026-01-16 10:35:53,699 | INFO     | --- collectZombieJob: --- 10, [3490531]
[2026-01-16 10:36:26] 2026-01-16 10:35:53,699 | INFO     | zombie collector waiting for pid 3490531
[2026-01-16 10:36:26] 2026-01-16 10:35:53,699 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 10:36:26] 2026-01-16 10:35:53,699 | INFO     | collected zombie processes
[2026-01-16 10:36:26] 2026-01-16 10:35:53,700 | INFO     | will attempt to kill all subprocesses of pid=3490531
[2026-01-16 10:36:26] 2026-01-16 10:35:55,054 | INFO     | process IDs to be killed: [3490531] (in reverse order)
[2026-01-16 10:36:26] 2026-01-16 10:35:55,536 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 10:36:26] 2026-01-16 10:35:55,537 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 10:36:26] 2026-01-16 10:35:55,570 | INFO     | did not find any defunct processes belonging to 3490531
[2026-01-16 10:36:26] 2026-01-16 10:35:55,606 | INFO     | did not find any defunct processes belonging to 3490531
[2026-01-16 10:36:26] 2026-01-16 10:35:55,606 | INFO     | ready for new job
[2026-01-16 10:36:26] 2026-01-16 10:35:55,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 10:36:26] 2026-01-16 10:35:55,608 | INFO     | ***************************************
[2026-01-16 10:36:26] 2026-01-16 10:35:55,608 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 10:36:26] 2026-01-16 10:35:55,608 | INFO     | ***************************************
[2026-01-16 10:36:26] 2026-01-16 10:35:55,608 | INFO     | 
[2026-01-16 10:36:26] 2026-01-16 10:35:55,639 | INFO     | architecture information:
[2026-01-16 10:36:26] 2026-01-16 10:35:55,641 | INFO     | executing command: cat /etc/os-release
[2026-01-16 10:36:26] 2026-01-16 10:35:55,695 | INFO     | cat /etc/os-release:
[2026-01-16 10:36:26] NAME="CentOS Linux"
[2026-01-16 10:36:26] VERSION="7 (Core)"
[2026-01-16 10:36:26] ID="centos"
[2026-01-16 10:36:26] ID_LIKE="rhel fedora"
[2026-01-16 10:36:26] VERSION_ID="7"
[2026-01-16 10:36:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 10:36:26] ANSI_COLOR="0;31"
[2026-01-16 10:36:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 10:36:26] HOME_URL="https://www.centos.org/"
[2026-01-16 10:36:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 10:36:26] 
[2026-01-16 10:36:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 10:36:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 10:36:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 10:36:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 10:36:26] 
[2026-01-16 10:36:26] 2026-01-16 10:35:55,695 | INFO     | ***************************************
[2026-01-16 10:36:26] 2026-01-16 10:35:56,198 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31426/slots/1
[2026-01-16 10:36:26] 2026-01-16 10:35:56,246 | INFO     | sufficient remaining disk space (272297361408 B)
[2026-01-16 10:36:26] 2026-01-16 10:35:56,246 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 10:36:26] 2026-01-16 10:35:56,246 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 10:36:26] 2026-01-16 10:35:56,246 | INFO     | update_server=False
[2026-01-16 10:36:26] 2026-01-16 10:35:56,247 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 10:36:26] 2026-01-16 10:35:56,443 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 10:36:26] 2026-01-16 10:35:56,576 | INFO     | all job control threads have been joined
[2026-01-16 10:36:26] 2026-01-16 10:35:56,603 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-16 10:36:26] 2026-01-16 10:35:56,603 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-16 10:36:26] 2026-01-16 10:35:56,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 10:36:26] 2026-01-16 10:35:56,604 | INFO     | will abort loop
[2026-01-16 10:36:26] 2026-01-16 10:35:56,887 | INFO     | all data control threads have been joined
[2026-01-16 10:36:26] 2026-01-16 10:35:57,222 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 10:36:26] 2026-01-16 10:35:57,252 | INFO     | [job] retrieve thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:57,277 | INFO     | all payload control threads have been joined
[2026-01-16 10:36:26] 2026-01-16 10:35:57,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 10:36:26] 2026-01-16 10:35:57,519 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:57,581 | INFO     | [job] control thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:57,608 | INFO     | [job] job monitor thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:57,846 | INFO     | [payload] failed_post thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:57,892 | INFO     | [data] control thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:58,026 | INFO     | [data] copytool_in thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:58,030 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:58,143 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:58,189 | INFO     | [job] validate thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:58,282 | INFO     | [payload] control thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:58,322 | INFO     | [job] queue monitor thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:58,446 | INFO     | [payload] validate_post thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:35:59,227 | INFO     | [data] copytool_out thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:36:00,448 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:36:02,657 | INFO     | [monitor] cgroup control has ended
[2026-01-16 10:36:26] 2026-01-16 10:36:07,017 | INFO     | job.realtimelogging is not enabled
[2026-01-16 10:36:26] 2026-01-16 10:36:08,022 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 10:36:26] 2026-01-16 10:36:08,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127430049040192)>', '<ExcThread(monitor, started 127429481830144)>']
[2026-01-16 10:36:26] 2026-01-16 10:36:13,222 | INFO     | all workflow threads have been joined
[2026-01-16 10:36:26] 2026-01-16 10:36:13,222 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 10:36:26] 2026-01-16 10:36:13,223 | INFO     | traces error code: 0
[2026-01-16 10:36:26] 2026-01-16 10:36:13,223 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 10:36:26] 2026-01-16 10:36:25,341 | INFO     | PID=3483232 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 10:36:26] 2026-01-16 10:36:25,341 | INFO     | .. there are 22 such processes running
[2026-01-16 10:36:26] 2026-01-16 10:36:25,342 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 10:36:26] 2026-01-16 10:36:25,342 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 10:36:26] 2026-01-16 10:36:25,342 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 10:36:26] 2026-01-16 10:36:25,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 10:36:26] 2026-01-16 10:36:25,342 | INFO     | [monitor] control thread has ended
[2026-01-16 10:36:26] 2026-01-16 10:36:25,925 [wrapper] ==== pilot stdout END ====
[2026-01-16 10:36:26] 2026-01-16 10:36:25,935 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 10:36:26] 2026-01-16 10:36:25,941 [wrapper] pilotpid: 3483232
[2026-01-16 10:36:26] 2026-01-16 10:36:25,949 [wrapper] Pilot exit status: 0
[2026-01-16 10:36:26] 2026-01-16 10:36:25,978 [wrapper] pandaids: 6969632384
[2026-01-16 10:36:26] 2026-01-16 10:36:26,214 [wrapper] cleanup supervisor_pilot 3974747 3483233
[2026-01-16 10:36:26] 2026-01-16 10:36:26,227 [wrapper] Test setup, not cleaning
[2026-01-16 10:36:26] 2026-01-16 10:36:26,240 [wrapper] apfmon messages muted
[2026-01-16 10:36:26] 2026-01-16 10:36:26,252 [wrapper] ==== wrapper stdout END ====
[2026-01-16 10:36:26] 2026-01-16 10:36:26,264 [wrapper] ==== wrapper stderr END ====
[2026-01-16 10:36:26]  *** Error codes and diagnostics ***
[2026-01-16 10:36:26]     "exeErrorCode": 0,
[2026-01-16 10:36:26]     "exeErrorDiag": "",
[2026-01-16 10:36:26]     "pilotErrorCode": 0,
[2026-01-16 10:36:26]     "pilotErrorDiag": "",
[2026-01-16 10:36:26]  *** Listing of results directory ***
[2026-01-16 10:36:26] total 747776
[2026-01-16 10:36:26] -rw-r--r-- 1 boinc boinc      5112 Jan 14 20:15 queuedata.json
[2026-01-16 10:36:26] -rw-r--r-- 1 boinc boinc    579449 Jan 14 20:15 pilot3.tar.gz
[2026-01-16 10:36:26] -rwx------ 1 boinc boinc     36322 Jan 14 20:16 runpilot2-wrapper.sh
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc       100 Jan 16 09:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 10:36:26] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 09:00 run_atlas
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc       105 Jan 16 09:00 job.xml
[2026-01-16 10:36:26] -rw-r--r-- 2 boinc boinc 599080688 Jan 16 09:00 EVNT.32794306._001358.pool.root.1
[2026-01-16 10:36:26] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:00 start_atlas.sh
[2026-01-16 10:36:26] drwxrwx--x 2 boinc boinc      4096 Jan 16 09:00 shared
[2026-01-16 10:36:26] -rw-r--r-- 2 boinc boinc    592402 Jan 16 09:00 input.tar.gz
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 09:00 init_data.xml
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc         0 Jan 16 09:00 boinc_setup_complete
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc         0 Jan 16 09:00 boinc_lockfile
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc      2508 Jan 16 09:00 pandaJob.out
[2026-01-16 10:36:26] -rw------- 1 boinc boinc   1004075 Jan 16 09:00 agis_schedconf.cvmfs.json
[2026-01-16 10:36:26] -rw------- 1 boinc boinc   1516246 Jan 16 09:00 agis_ddmendpoints.agis.ALL.json
[2026-01-16 10:36:26] drwx------ 5 boinc boinc      4096 Jan 16 09:00 pilot3
[2026-01-16 10:36:26] -rw------- 1 boinc boinc 160355342 Jan 16 10:34 HITS.48215263._033957.pool.root.1
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc       531 Jan 16 10:34 boinc_task_state.xml
[2026-01-16 10:36:26] -rw------- 1 boinc boinc      1022 Jan 16 10:35 memory_monitor_summary.json
[2026-01-16 10:36:26] -rw------- 1 boinc boinc    386630 Jan 16 10:35 log.48215263._033957.job.log.tgz.1
[2026-01-16 10:36:26] -rw------- 1 boinc boinc      7727 Jan 16 10:35 heartbeat.json
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 10:36 boinc_mmap_file
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc        27 Jan 16 10:36 wrapper_checkpoint.txt
[2026-01-16 10:36:26] -rw------- 1 boinc boinc       823 Jan 16 10:36 pilotlog.txt
[2026-01-16 10:36:26] -rw------- 1 boinc boinc        95 Jan 16 10:36 pilot_heartbeat.json
[2026-01-16 10:36:26] -rw------- 1 boinc boinc    793242 Jan 16 10:36 log.48215263._033957.job.log.1
[2026-01-16 10:36:26] -rw------- 1 boinc boinc       357 Jan 16 10:36 output.list
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc       620 Jan 16 10:36 runtime_log
[2026-01-16 10:36:26] -rw------- 1 boinc boinc   1198080 Jan 16 10:36 result.tar.gz
[2026-01-16 10:36:26] -rw------- 1 boinc boinc       652 Jan 16 10:36 vvJMDmvSM08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFXsKDmd2hGOm.diag
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 10:36 runtime_log.err
[2026-01-16 10:36:26] -rw-rw-r-- 1 boinc boinc     22078 Jan 16 10:36 stderr.txt
[2026-01-16 10:36:26] HITS file was successfully produced:
[2026-01-16 10:36:26] -rw------- 1 boinc boinc 160355342 Jan 16 10:34 shared/HITS.pool.root.1
[2026-01-16 10:36:26]  *** Contents of shared directory: ***
[2026-01-16 10:36:26] total 743416
[2026-01-16 10:36:26] -rw-r--r-- 2 boinc boinc 599080688 Jan 16 09:00 ATLAS.root_0
[2026-01-16 10:36:26] -rw-r--r-- 2 boinc boinc     15847 Jan 16 09:00 start_atlas.sh
[2026-01-16 10:36:26] -rw-r--r-- 2 boinc boinc    592402 Jan 16 09:00 input.tar.gz
[2026-01-16 10:36:26] -rw------- 1 boinc boinc 160355342 Jan 16 10:34 HITS.pool.root.1
[2026-01-16 10:36:26] -rw------- 1 boinc boinc   1198080 Jan 16 10:36 result.tar.gz
10:36:28 (3479037): run_atlas exited; CPU time 31947.035283
10:36:28 (3479037): called boinc_finish(0)

</stderr_txt>
]]>

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