Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:51:07 (3241202): wrapper (7.7.26015): starting
03:51:07 (3241202): wrapper: running run_atlas (--nthreads 4)
[2026-01-15 03:51:07] Arguments: --nthreads 4
[2026-01-15 03:51:07] Threads: 4
[2026-01-15 03:51:07] Checking for CVMFS
[2026-01-15 03:51:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 03:51:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 03:51:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 03:51:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 03:51:07] 2.9.2.0 2429254 1833 93436 155152 2 57 21739261 36864000 0 130560 0 2128011 99.992 70566 16753 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 03:51:07] CVMFS is ok
[2026-01-15 03:51:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 03:51:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 03:51:07] Further information can be found at the LHC@home message board.
[2026-01-15 03:51:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 03:51:07] Checking for apptainer binary...
[2026-01-15 03:51:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 03:51:07] Running /usr/bin/apptainer --version
[2026-01-15 03:51:07] apptainer version 1.4.1-1.1
[2026-01-15 03:51:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 03:51:07] thA309
[2026-01-15 03:51:07] apptainer works
[2026-01-15 03:51:07] Set ATHENA_PROC_NUMBER=4
[2026-01-15 03:51:07] Set ATHENA_CORE_NUMBER=4
[2026-01-15 03:51:07] Starting ATLAS job with PandaID=6969710272
[2026-01-15 03:51:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 04:41:26]  *** The last 200 lines of the pilot log: ***
[2026-01-15 04:41:26] 2026-01-15 03:40:51,171 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,171 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,171 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,171 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,171 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | job 6969710272 has completed (purged errors)
[2026-01-15 04:41:26] 2026-01-15 03:40:51,172 | INFO     | overall cleanup function is called
[2026-01-15 04:41:26] 2026-01-15 03:40:52,179 | INFO     | --- collectZombieJob: --- 10, [3251563]
[2026-01-15 04:41:26] 2026-01-15 03:40:52,179 | INFO     | zombie collector waiting for pid 3251563
[2026-01-15 04:41:26] 2026-01-15 03:40:52,179 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 04:41:26] 2026-01-15 03:40:52,179 | INFO     | collected zombie processes
[2026-01-15 04:41:26] 2026-01-15 03:40:52,179 | INFO     | will attempt to kill all subprocesses of pid=3251563
[2026-01-15 04:41:26] 2026-01-15 03:40:52,231 | INFO     | process IDs to be killed: [3251563] (in reverse order)
[2026-01-15 04:41:26] 2026-01-15 03:40:52,268 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 04:41:26] 2026-01-15 03:40:52,268 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 04:41:26] 2026-01-15 03:40:52,270 | INFO     | did not find any defunct processes belonging to 3251563
[2026-01-15 04:41:26] 2026-01-15 03:40:52,272 | INFO     | did not find any defunct processes belonging to 3251563
[2026-01-15 04:41:26] 2026-01-15 03:40:52,272 | INFO     | ready for new job
[2026-01-15 04:41:26] 2026-01-15 03:40:52,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 04:41:26] 2026-01-15 03:40:52,272 | INFO     | ***************************************
[2026-01-15 04:41:26] 2026-01-15 03:40:52,272 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 04:41:26] 2026-01-15 03:40:52,272 | INFO     | ***************************************
[2026-01-15 04:41:26] 2026-01-15 03:40:52,273 | INFO     | 
[2026-01-15 04:41:26] 2026-01-15 03:40:52,273 | INFO     | architecture information:
[2026-01-15 04:41:26] 2026-01-15 03:40:52,273 | INFO     | executing command: cat /etc/os-release
[2026-01-15 04:41:26] 2026-01-15 03:40:52,289 | INFO     | cat /etc/os-release:
[2026-01-15 04:41:26] NAME="CentOS Linux"
[2026-01-15 04:41:26] VERSION="7 (Core)"
[2026-01-15 04:41:26] ID="centos"
[2026-01-15 04:41:26] ID_LIKE="rhel fedora"
[2026-01-15 04:41:26] VERSION_ID="7"
[2026-01-15 04:41:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 04:41:26] ANSI_COLOR="0;31"
[2026-01-15 04:41:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 04:41:26] HOME_URL="https://www.centos.org/"
[2026-01-15 04:41:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 04:41:26] 
[2026-01-15 04:41:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 04:41:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 04:41:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 04:41:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 04:41:26] 
[2026-01-15 04:41:26] 2026-01-15 03:40:52,289 | INFO     | ***************************************
[2026-01-15 04:41:26] 2026-01-15 03:40:52,792 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 04:41:26] 2026-01-15 03:40:52,811 | INFO     | sufficient remaining disk space (237786628096 B)
[2026-01-15 04:41:26] 2026-01-15 03:40:52,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 04:41:26] 2026-01-15 03:40:52,811 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 04:41:26] 2026-01-15 03:40:52,811 | INFO     | update_server=False
[2026-01-15 04:41:26] 2026-01-15 03:40:52,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 04:41:26] 2026-01-15 03:40:52,811 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 04:41:26] 2026-01-15 03:40:52,839 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 04:41:26] 2026-01-15 03:40:52,840 | INFO     | aborting loop
[2026-01-15 04:41:26] 2026-01-15 03:40:53,077 | INFO     | all job control threads have been joined
[2026-01-15 04:41:26] 2026-01-15 03:40:53,082 | INFO     | all payload control threads have been joined
[2026-01-15 04:41:26] 2026-01-15 03:40:53,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 04:41:26] 2026-01-15 03:40:53,685 | INFO     | all data control threads have been joined
[2026-01-15 04:41:26] 2026-01-15 03:40:53,817 | INFO     | [job] queue monitor thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:53,817 | INFO     | [job] retrieve thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:53,845 | INFO     | [job] job monitor thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:53,846 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:53,880 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:54,083 | INFO     | [job] control thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:54,088 | INFO     | [payload] control thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:54,357 | INFO     | [payload] validate_post thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:54,441 | INFO     | [data] copytool_in thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:54,691 | INFO     | [data] control thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:55,113 | INFO     | [payload] failed_post thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:55,123 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:55,210 | INFO     | [job] validate thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:55,492 | INFO     | [data] copytool_out thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:40:55,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 04:41:26] 2026-01-15 03:40:59,835 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:41:03,441 | INFO     | job.realtimelogging is not enabled
[2026-01-15 04:41:26] 2026-01-15 03:41:04,447 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 04:41:26] 2026-01-15 03:41:18,934 | INFO     | [monitor] cgroup control has ended
[2026-01-15 04:41:26] 2026-01-15 03:41:20,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140232402151232)>', '<ExcThread(monitor, started 140231453947648)>']
[2026-01-15 04:41:26] 2026-01-15 03:41:22,840 | INFO     | PID=3244990 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 04:41:26] 2026-01-15 03:41:22,840 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 04:41:26] 2026-01-15 03:41:22,840 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 04:41:26] 2026-01-15 03:41:22,840 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 04:41:26] 2026-01-15 03:41:22,840 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 04:41:26] 2026-01-15 03:41:22,840 | INFO     | [monitor] control thread has ended
[2026-01-15 04:41:26] 2026-01-15 03:41:26,013 | INFO     | all workflow threads have been joined
[2026-01-15 04:41:26] 2026-01-15 03:41:26,013 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 04:41:26] 2026-01-15 03:41:26,014 | INFO     | traces error code: 0
[2026-01-15 04:41:26] 2026-01-15 03:41:26,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 04:41:26] 2026-01-15 03:41:26,097 [wrapper] ==== pilot stdout END ====
[2026-01-15 04:41:26] 2026-01-15 03:41:26,101 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 04:41:26] 2026-01-15 03:41:26,106 [wrapper] pilotpid: 3244990
[2026-01-15 04:41:26] 2026-01-15 03:41:26,110 [wrapper] Pilot exit status: 0
[2026-01-15 04:41:26] 2026-01-15 03:41:26,122 [wrapper] pandaids: 6969710272
[2026-01-15 04:41:26] 2026-01-15 03:41:26,146 [wrapper] cleanup supervisor_pilot 3261353 3244991
[2026-01-15 04:41:26] 2026-01-15 03:41:26,150 [wrapper] Test setup, not cleaning
[2026-01-15 04:41:26] 2026-01-15 03:41:26,154 [wrapper] apfmon messages muted
[2026-01-15 04:41:26] 2026-01-15 03:41:26,158 [wrapper] ==== wrapper stdout END ====
[2026-01-15 04:41:26] 2026-01-15 03:41:26,162 [wrapper] ==== wrapper stderr END ====
[2026-01-15 04:41:26]  *** Error codes and diagnostics ***
[2026-01-15 04:41:26]     "exeErrorCode": 0,
[2026-01-15 04:41:26]     "exeErrorDiag": "",
[2026-01-15 04:41:26]     "pilotErrorCode": 0,
[2026-01-15 04:41:26]     "pilotErrorDiag": "",
[2026-01-15 04:41:26]  *** Listing of results directory ***
[2026-01-15 04:41:26] total 744852
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc    579449 Jan 14 22:43 pilot3.tar.gz
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc      5112 Jan 14 22:43 queuedata.json
[2026-01-15 04:41:26] -rwx------ 1 boinc boinc     36322 Jan 14 22:43 runpilot2-wrapper.sh
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc       100 Jan 15 03:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 04:41:26] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 03:51 run_atlas
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc       105 Jan 15 03:51 job.xml
[2026-01-15 04:41:26] -rw-r--r-- 2 boinc boinc 602208643 Jan 15 03:51 EVNT.32794306._001425.pool.root.1
[2026-01-15 04:41:26] drwxrwx--x 2 boinc boinc      4096 Jan 15 03:51 shared
[2026-01-15 04:41:26] -rw-r--r-- 2 boinc boinc    592399 Jan 15 03:51 input.tar.gz
[2026-01-15 04:41:26] -rw-r--r-- 2 boinc boinc     15847 Jan 15 03:51 start_atlas.sh
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc         0 Jan 15 03:51 boinc_setup_complete
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc      6377 Jan 15 03:51 init_data.xml
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc         0 Jan 15 03:51 boinc_lockfile
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc      2508 Jan 15 03:51 pandaJob.out
[2026-01-15 04:41:26] -rw------- 1 boinc boinc    999480 Jan 15 03:51 agis_schedconf.cvmfs.json
[2026-01-15 04:41:26] -rw------- 1 boinc boinc   1516246 Jan 15 03:51 agis_ddmendpoints.agis.ALL.json
[2026-01-15 04:41:26] drwx------ 5 boinc boinc      4096 Jan 15 03:51 pilot3
[2026-01-15 04:41:26] -rw------- 1 boinc boinc 155210193 Jan 15 04:40 HITS.48215263._035663.pool.root.1
[2026-01-15 04:41:26] -rw------- 1 boinc boinc        95 Jan 15 04:40 pilot_heartbeat.json
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc       530 Jan 15 04:40 boinc_task_state.xml
[2026-01-15 04:41:26] -rw------- 1 boinc boinc      1021 Jan 15 04:40 memory_monitor_summary.json
[2026-01-15 04:41:26] -rw------- 1 boinc boinc    236502 Jan 15 04:40 log.48215263._035663.job.log.tgz.1
[2026-01-15 04:41:26] -rw------- 1 boinc boinc      7763 Jan 15 04:40 heartbeat.json
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc        27 Jan 15 04:41 wrapper_checkpoint.txt
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc      8192 Jan 15 04:41 boinc_mmap_file
[2026-01-15 04:41:26] -rw------- 1 boinc boinc      4824 Jan 15 04:41 pilotlog.txt
[2026-01-15 04:41:26] -rw------- 1 boinc boinc    457215 Jan 15 04:41 log.48215263._035663.job.log.1
[2026-01-15 04:41:26] -rw------- 1 boinc boinc       357 Jan 15 04:41 output.list
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc       620 Jan 15 04:41 runtime_log
[2026-01-15 04:41:26] -rw------- 1 boinc boinc    716800 Jan 15 04:41 result.tar.gz
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc      8897 Jan 15 04:41 runtime_log.err
[2026-01-15 04:41:26] -rw------- 1 boinc boinc       657 Jan 15 04:41 iYnNDmepN08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvmsKDmi3Up7m.diag
[2026-01-15 04:41:26] -rw-r--r-- 1 boinc boinc     12642 Jan 15 04:41 stderr.txt
[2026-01-15 04:41:26] HITS file was successfully produced:
[2026-01-15 04:41:26] -rw------- 1 boinc boinc 155210193 Jan 15 04:40 shared/HITS.pool.root.1
[2026-01-15 04:41:26]  *** Contents of shared directory: ***
[2026-01-15 04:41:26] total 740976
[2026-01-15 04:41:26] -rw-r--r-- 2 boinc boinc 602208643 Jan 15 03:51 ATLAS.root_0
[2026-01-15 04:41:26] -rw-r--r-- 2 boinc boinc    592399 Jan 15 03:51 input.tar.gz
[2026-01-15 04:41:26] -rw-r--r-- 2 boinc boinc     15847 Jan 15 03:51 start_atlas.sh
[2026-01-15 04:41:26] -rw------- 1 boinc boinc 155210193 Jan 15 04:40 HITS.pool.root.1
[2026-01-15 04:41:26] -rw------- 1 boinc boinc    716800 Jan 15 04:41 result.tar.gz
04:41:27 (3241202): run_atlas exited; CPU time 10958.354336
04:41:27 (3241202): called boinc_finish(0)

</stderr_txt>
]]>

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