Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:34:03 (769522): wrapper (7.7.26015): starting
00:34:03 (769522): wrapper: running run_atlas (--nthreads 12)
[2026-01-16 00:34:03] Arguments: --nthreads 12
[2026-01-16 00:34:03] Threads: 12
[2026-01-16 00:34:03] Checking for CVMFS
[2026-01-16 00:34:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-16 00:34:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-16 00:34:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-16 00:34:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-16 00:34:04] 2.13.3.0 40677 9762 74856 155190 3 239 3941597 4096001 19749 130560 0 74133248 99.979 1127011 229 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-16 00:34:04] CVMFS is ok
[2026-01-16 00:34:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-16 00:34:04] Checking for apptainer binary...
[2026-01-16 00:34:04] apptainer is not installed, using version from CVMFS
[2026-01-16 00:34:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-16 00:34:06] epyc7v12
[2026-01-16 00:34:06] apptainer works
[2026-01-16 00:34:06] Set ATHENA_PROC_NUMBER=12
[2026-01-16 00:34:06] Set ATHENA_CORE_NUMBER=12
[2026-01-16 00:34:07] Starting ATLAS job with PandaID=6969563228
[2026-01-16 00:34:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31423/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-16 02:09:55]  *** The last 200 lines of the pilot log: ***
[2026-01-16 02:09:55] 2026-01-16 02:09:04,042 | INFO     | stage-out finished correctly
[2026-01-16 02:09:55] 2026-01-16 02:09:04,897 | INFO     | time since job start (5666s) is within the limit (349056.0s)
[2026-01-16 02:09:55] 2026-01-16 02:09:05,856 | INFO     | monitor loop #372: job 0:6969563228 is in state 'finished'
[2026-01-16 02:09:55] 2026-01-16 02:09:05,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 02:09:55] 2026-01-16 02:09:06,901 | INFO     | time since job start (5668s) is within the limit (349056.0s)
[2026-01-16 02:09:55] 2026-01-16 02:09:07,631 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-16 02:09:55] 2026-01-16 02:09:07,860 | INFO     | job 6969563228 has state=finished
[2026-01-16 02:09:55] 2026-01-16 02:09:07,861 | INFO     | preparing for final server update for job 6969563228 in state='finished'
[2026-01-16 02:09:55] 2026-01-16 02:09:07,861 | INFO     | this job has now completed (state=finished)
[2026-01-16 02:09:55] 2026-01-16 02:09:07,861 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-16 02:09:55] 2026-01-16 02:09:07,862 | INFO     | log transfer has been attempted: DONE
[2026-01-16 02:09:55] 2026-01-16 02:09:07,862 | INFO     | job 6969563228 has finished - writing final server update
[2026-01-16 02:09:55] 2026-01-16 02:09:07,862 | INFO     | total number of processed events: 400 (read)
[2026-01-16 02:09:55] 2026-01-16 02:09:07,862 | INFO     | executing command: lscpu
[2026-01-16 02:09:55] 2026-01-16 02:09:08,013 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-16 02:09:55] 2026-01-16 02:09:08,384 | INFO     | monitor loop #373: job 0:6969563228 is in state 'finished'
[2026-01-16 02:09:55] 2026-01-16 02:09:08,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 02:09:55] 2026-01-16 02:09:08,913 | INFO     | time since job start (5670s) is within the limit (349056.0s)
[2026-01-16 02:09:55] 2026-01-16 02:09:10,887 | INFO     | monitor loop #374: job 0:6969563228 is in state 'finished'
[2026-01-16 02:09:55] 2026-01-16 02:09:10,887 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 02:09:55] 2026-01-16 02:09:11,236 | INFO     | PID=773733 has CPU usage=14.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-16 02:09:55] 2026-01-16 02:09:11,236 | INFO     | .. there are 22 such processes running
[2026-01-16 02:09:55] 2026-01-16 02:09:12,239 | INFO     | time since job start (5674s) is within the limit (349056.0s)
[2026-01-16 02:09:55] 2026-01-16 02:09:12,239 | INFO     | 5676s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-16 02:09:55] 2026-01-16 02:09:13,391 | INFO     | monitor loop #375: job 0:6969563228 is in state 'finished'
[2026-01-16 02:09:55] 2026-01-16 02:09:13,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 02:09:55] 2026-01-16 02:09:14,244 | INFO     | time since job start (5676s) is within the limit (349056.0s)
[2026-01-16 02:09:55] 2026-01-16 02:09:15,900 | INFO     | monitor loop #376: job 0:6969563228 is in state 'finished'
[2026-01-16 02:09:55] 2026-01-16 02:09:15,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 02:09:55] 2026-01-16 02:09:16,249 | INFO     | time since job start (5678s) is within the limit (349056.0s)
[2026-01-16 02:09:55] 2026-01-16 02:09:18,257 | INFO     | time since job start (5680s) is within the limit (349056.0s)
[2026-01-16 02:09:55] 2026-01-16 02:09:18,404 | INFO     | monitor loop #377: job 0:6969563228 is in state 'finished'
[2026-01-16 02:09:55] 2026-01-16 02:09:18,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 02:09:55] 2026-01-16 02:09:20,264 | INFO     | time since job start (5682s) is within the limit (349056.0s)
[2026-01-16 02:09:55] 2026-01-16 02:09:20,908 | INFO     | monitor loop #378: job 0:6969563228 is in state 'finished'
[2026-01-16 02:09:55] 2026-01-16 02:09:20,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-16 02:09:55] 2026-01-16 02:09:21,364 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-16 02:09:55] 2026-01-16 02:09:21,412 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2396.741156249999
[2026-01-16 02:09:55] 2026-01-16 02:09:21,468 | INFO     | using path: /opt/boinc/instance_homes/boinc_31423/slots/1/PanDA_Pilot-6969563228/memory_monitor_summary.json (trf name=prmon)
[2026-01-16 02:09:55] 2026-01-16 02:09:21,469 | INFO     | extracted standard info from prmon json
[2026-01-16 02:09:55] 2026-01-16 02:09:21,469 | INFO     | extracted standard memory fields from prmon json
[2026-01-16 02:09:55] 2026-01-16 02:09:21,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-16 02:09:55] 2026-01-16 02:09:21,469 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-16 02:09:55] 2026-01-16 02:09:21,469 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-16 02:09:55] 2026-01-16 02:09:21,475 | INFO     | fitting pss+swap vs Time
[2026-01-16 02:09:55] 2026-01-16 02:09:21,475 | INFO     | sum of square deviations: 190403570.0
[2026-01-16 02:09:55] 2026-01-16 02:09:21,476 | INFO     | sum of deviations: 5015800579.0
[2026-01-16 02:09:55] 2026-01-16 02:09:21,476 | INFO     | mean x: 1768526616.0
[2026-01-16 02:09:55] 2026-01-16 02:09:21,480 | INFO     | mean y: 2683672.376470588
[2026-01-16 02:09:55] 2026-01-16 02:09:21,480 | INFO     | intersect: -46585606791.45102
[2026-01-16 02:09:55] 2026-01-16 02:09:21,480 | INFO     | chi2: 0.18511277631048598
[2026-01-16 02:09:55] 2026-01-16 02:09:21,480 | INFO     | current memory leak: 26.34 B/s (using 85 data points, chi2=0.19)
[2026-01-16 02:09:55] 2026-01-16 02:09:21,481 | INFO     | could have reported an average CPU frequency of 2399 MHz (7 samples)
[2026-01-16 02:09:55] 2026-01-16 02:09:21,481 | INFO     | ..............................
[2026-01-16 02:09:55] 2026-01-16 02:09:21,481 | INFO     | . Timing measurements:
[2026-01-16 02:09:55] 2026-01-16 02:09:21,481 | INFO     | . get job = 0 s
[2026-01-16 02:09:55] 2026-01-16 02:09:21,481 | INFO     | . initial setup = 2 s
[2026-01-16 02:09:55] 2026-01-16 02:09:21,481 | INFO     | . payload setup = 18 s
[2026-01-16 02:09:55] 2026-01-16 02:09:21,481 | INFO     | . stage-in = 0 s
[2026-01-16 02:09:55] 2026-01-16 02:09:21,482 | INFO     | . payload execution = 5604 s
[2026-01-16 02:09:55] 2026-01-16 02:09:21,482 | INFO     | . stage-out = 1 s
[2026-01-16 02:09:55] 2026-01-16 02:09:21,482 | INFO     | . log creation = 0 s
[2026-01-16 02:09:55] 2026-01-16 02:09:21,482 | INFO     | ..............................
[2026-01-16 02:09:55] 2026-01-16 02:09:21,705 | INFO     | 
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | job summary report
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | --------------------------------------------------
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | PanDA job id: 6969563228
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | task id: 48215263
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | errors: (none)
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | pilot state: finished 
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | transexitcode: 0
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | exeerrorcode: 0
[2026-01-16 02:09:55] 2026-01-16 02:09:21,706 | INFO     | exeerrordiag: 
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | exitcode: 0
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | exitmsg: OK
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | cpuconsumptiontime: 29968 s
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | nevents: 400
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | neventsw: 0
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | pid: 781067
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | pgrp: 781067
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | corecount: 12
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | event service: False
[2026-01-16 02:09:55] 2026-01-16 02:09:21,707 | INFO     | sizes: {0: 2283123, 1: 2283831, 2: 2284030, 13: 2284030, 15: 2284348, 23: 2284376, 5626: 2311202, 5628: 2320246, 5631: 2320302, 5645: 2320496}
[2026-01-16 02:09:55] 2026-01-16 02:09:21,708 | INFO     | --------------------------------------------------
[2026-01-16 02:09:55] 2026-01-16 02:09:21,708 | INFO     | 
[2026-01-16 02:09:55] 2026-01-16 02:09:21,708 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 02:09:55] 2026-01-16 02:09:21,766 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,767 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,767 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,767 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,767 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,767 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,767 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,767 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,767 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,767 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-16 02:09:55] 2026-01-16 02:09:21,768 | INFO     | job 6969563228 has completed (purged errors)
[2026-01-16 02:09:55] 2026-01-16 02:09:21,769 | INFO     | overall cleanup function is called
[2026-01-16 02:09:55] 2026-01-16 02:09:22,789 | INFO     | --- collectZombieJob: --- 10, [781067]
[2026-01-16 02:09:55] 2026-01-16 02:09:22,789 | INFO     | zombie collector waiting for pid 781067
[2026-01-16 02:09:55] 2026-01-16 02:09:22,789 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-16 02:09:55] 2026-01-16 02:09:22,789 | INFO     | collected zombie processes
[2026-01-16 02:09:55] 2026-01-16 02:09:22,790 | INFO     | will attempt to kill all subprocesses of pid=781067
[2026-01-16 02:09:55] 2026-01-16 02:09:24,367 | INFO     | process IDs to be killed: [781067] (in reverse order)
[2026-01-16 02:09:55] 2026-01-16 02:09:24,978 | WARNING  | found no corresponding commands to process id(s)
[2026-01-16 02:09:55] 2026-01-16 02:09:24,978 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-16 02:09:55] 2026-01-16 02:09:25,020 | INFO     | did not find any defunct processes belonging to 781067
[2026-01-16 02:09:55] 2026-01-16 02:09:25,059 | INFO     | did not find any defunct processes belonging to 781067
[2026-01-16 02:09:55] 2026-01-16 02:09:25,061 | INFO     | ready for new job
[2026-01-16 02:09:55] 2026-01-16 02:09:25,061 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-16 02:09:55] 2026-01-16 02:09:25,071 | INFO     | ***************************************
[2026-01-16 02:09:55] 2026-01-16 02:09:25,071 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-16 02:09:55] 2026-01-16 02:09:25,071 | INFO     | ***************************************
[2026-01-16 02:09:55] 2026-01-16 02:09:25,072 | INFO     | 
[2026-01-16 02:09:55] 2026-01-16 02:09:25,093 | INFO     | architecture information:
[2026-01-16 02:09:55] 2026-01-16 02:09:25,098 | INFO     | executing command: cat /etc/os-release
[2026-01-16 02:09:55] 2026-01-16 02:09:25,157 | INFO     | cat /etc/os-release:
[2026-01-16 02:09:55] NAME="CentOS Linux"
[2026-01-16 02:09:55] VERSION="7 (Core)"
[2026-01-16 02:09:55] ID="centos"
[2026-01-16 02:09:55] ID_LIKE="rhel fedora"
[2026-01-16 02:09:55] VERSION_ID="7"
[2026-01-16 02:09:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-16 02:09:55] ANSI_COLOR="0;31"
[2026-01-16 02:09:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-16 02:09:55] HOME_URL="https://www.centos.org/"
[2026-01-16 02:09:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-16 02:09:55] 
[2026-01-16 02:09:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-16 02:09:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-16 02:09:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-16 02:09:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-16 02:09:55] 
[2026-01-16 02:09:55] 2026-01-16 02:09:25,158 | INFO     | ***************************************
[2026-01-16 02:09:55] 2026-01-16 02:09:25,664 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31423/slots/1
[2026-01-16 02:09:55] 2026-01-16 02:09:25,712 | INFO     | sufficient remaining disk space (220126511104 B)
[2026-01-16 02:09:55] 2026-01-16 02:09:25,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-16 02:09:55] 2026-01-16 02:09:25,713 | INFO     | current server update state: UPDATING_FINAL
[2026-01-16 02:09:55] 2026-01-16 02:09:25,713 | INFO     | update_server=False
[2026-01-16 02:09:55] 2026-01-16 02:09:25,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-16 02:09:55] 2026-01-16 02:09:25,716 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-16 02:09:55] 2026-01-16 02:09:25,822 | INFO     | all payload control threads have been joined
[2026-01-16 02:09:55] 2026-01-16 02:09:25,918 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-16 02:09:55] 2026-01-16 02:09:25,918 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-16 02:09:55] 2026-01-16 02:09:25,918 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-16 02:09:55] 2026-01-16 02:09:25,919 | INFO     | will abort loop
[2026-01-16 02:09:55] 2026-01-16 02:09:26,707 | INFO     | all data control threads have been joined
[2026-01-16 02:09:55] 2026-01-16 02:09:26,721 | INFO     | [job] retrieve thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:26,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-16 02:09:55] 2026-01-16 02:09:26,827 | INFO     | [payload] control thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:26,853 | INFO     | [payload] failed_post thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:26,922 | INFO     | [job] validate thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:26,923 | INFO     | [job] job monitor thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:27,151 | INFO     | all job control threads have been joined
[2026-01-16 02:09:55] 2026-01-16 02:09:27,183 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:27,385 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-16 02:09:55] 2026-01-16 02:09:27,403 | INFO     | [job] create_data_payload thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:27,531 | INFO     | [payload] execute_payloads thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:27,712 | INFO     | [data] control thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:27,721 | INFO     | [data] copytool_out thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:27,733 | INFO     | [payload] validate_post thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:27,741 | INFO     | [job] queue monitor thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:28,107 | INFO     | [payload] validate_pre thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:28,108 | INFO     | [data] copytool_in thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:28,156 | INFO     | [job] control thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:31,391 | INFO     | [data] queue_monitor thread has finished
[2026-01-16 02:09:55] 2026-01-16 02:09:47,572 | INFO     | [monitor] cgroup control has ended
[2026-01-16 02:09:55] 2026-01-16 02:09:49,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 127733696337728)>', '<ExcThread(monitor, started 127733283657472)>']
[2026-01-16 02:09:55] 2026-01-16 02:09:54,310 | INFO     | all workflow threads have been joined
[2026-01-16 02:09:55] 2026-01-16 02:09:54,310 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-16 02:09:55] 2026-01-16 02:09:54,311 | INFO     | traces error code: 0
[2026-01-16 02:09:55] 2026-01-16 02:09:54,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-16 02:09:55] 2026-01-16 02:09:54,799 | INFO     | PID=773733 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-16 02:09:55] 2026-01-16 02:09:54,800 | INFO     | .. there are 22 such processes running
[2026-01-16 02:09:55] 2026-01-16 02:09:54,801 | INFO     | found 0 job(s) in 20 queues
[2026-01-16 02:09:55] 2026-01-16 02:09:54,802 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-16 02:09:55] 2026-01-16 02:09:54,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-16 02:09:55] 2026-01-16 02:09:54,802 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-16 02:09:55] 2026-01-16 02:09:54,805 | INFO     | [monitor] control thread has ended
[2026-01-16 02:09:55] 2026-01-16 02:09:54,994 [wrapper] ==== pilot stdout END ====
[2026-01-16 02:09:55] 2026-01-16 02:09:55,003 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-16 02:09:55] 2026-01-16 02:09:55,012 [wrapper] pilotpid: 773733
[2026-01-16 02:09:55] 2026-01-16 02:09:55,024 [wrapper] Pilot exit status: 0
[2026-01-16 02:09:55] 2026-01-16 02:09:55,072 [wrapper] pandaids: 6969563228
[2026-01-16 02:09:55] 2026-01-16 02:09:55,223 [wrapper] cleanup supervisor_pilot 1249179 773734
[2026-01-16 02:09:55] 2026-01-16 02:09:55,231 [wrapper] Test setup, not cleaning
[2026-01-16 02:09:55] 2026-01-16 02:09:55,241 [wrapper] apfmon messages muted
[2026-01-16 02:09:55] 2026-01-16 02:09:55,252 [wrapper] ==== wrapper stdout END ====
[2026-01-16 02:09:55] 2026-01-16 02:09:55,260 [wrapper] ==== wrapper stderr END ====
[2026-01-16 02:09:55]  *** Error codes and diagnostics ***
[2026-01-16 02:09:55]     "exeErrorCode": 0,
[2026-01-16 02:09:55]     "exeErrorDiag": "",
[2026-01-16 02:09:55]     "pilotErrorCode": 0,
[2026-01-16 02:09:55]     "pilotErrorDiag": "",
[2026-01-16 02:09:55]  *** Listing of results directory ***
[2026-01-16 02:09:55] total 738764
[2026-01-16 02:09:55] -rw-r--r-- 1 boinc boinc    579449 Jan 14 18:53 pilot3.tar.gz
[2026-01-16 02:09:55] -rwx------ 1 boinc boinc     36322 Jan 14 18:54 runpilot2-wrapper.sh
[2026-01-16 02:09:55] -rw-r--r-- 1 boinc boinc      5112 Jan 14 18:54 queuedata.json
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc       100 Jan 16 00:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-16 02:09:55] -rwxr-xr-x 1 boinc boinc      7986 Jan 16 00:34 run_atlas
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc       105 Jan 16 00:34 job.xml
[2026-01-16 02:09:55] -rw-r--r-- 2 boinc boinc 596359366 Jan 16 00:34 EVNT.32794306._001254.pool.root.1
[2026-01-16 02:09:55] -rw-r--r-- 2 boinc boinc     15847 Jan 16 00:34 start_atlas.sh
[2026-01-16 02:09:55] drwxrwx--x 2 boinc boinc      4096 Jan 16 00:34 shared
[2026-01-16 02:09:55] -rw-r--r-- 2 boinc boinc    592403 Jan 16 00:34 input.tar.gz
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc         0 Jan 16 00:34 boinc_setup_complete
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc      6556 Jan 16 00:34 init_data.xml
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc         0 Jan 16 00:34 boinc_lockfile
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc      2508 Jan 16 00:34 pandaJob.out
[2026-01-16 02:09:55] -rw------- 1 boinc boinc   1004091 Jan 16 00:34 agis_schedconf.cvmfs.json
[2026-01-16 02:09:55] -rw------- 1 boinc boinc   1516246 Jan 16 00:34 agis_ddmendpoints.agis.ALL.json
[2026-01-16 02:09:55] drwx------ 5 boinc boinc      4096 Jan 16 00:34 pilot3
[2026-01-16 02:09:55] -rw------- 1 boinc boinc 153801268 Jan 16 02:08 HITS.48215263._031358.pool.root.1
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc       531 Jan 16 02:08 boinc_task_state.xml
[2026-01-16 02:09:55] -rw------- 1 boinc boinc      1021 Jan 16 02:08 memory_monitor_summary.json
[2026-01-16 02:09:55] -rw------- 1 boinc boinc    411105 Jan 16 02:09 log.48215263._031358.job.log.tgz.1
[2026-01-16 02:09:55] -rw------- 1 boinc boinc      7730 Jan 16 02:09 heartbeat.json
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc        27 Jan 16 02:09 wrapper_checkpoint.txt
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc      8192 Jan 16 02:09 boinc_mmap_file
[2026-01-16 02:09:55] -rw------- 1 boinc boinc        95 Jan 16 02:09 pilot_heartbeat.json
[2026-01-16 02:09:55] -rw------- 1 boinc boinc       822 Jan 16 02:09 pilotlog.txt
[2026-01-16 02:09:55] -rw------- 1 boinc boinc    791025 Jan 16 02:09 log.48215263._031358.job.log.1
[2026-01-16 02:09:55] -rw------- 1 boinc boinc       357 Jan 16 02:09 output.list
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc       620 Jan 16 02:09 runtime_log
[2026-01-16 02:09:55] -rw------- 1 boinc boinc   1218560 Jan 16 02:09 result.tar.gz
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc      9167 Jan 16 02:09 runtime_log.err
[2026-01-16 02:09:55] -rw------- 1 boinc boinc       651 Jan 16 02:09 QXTMDmnBL08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBFsKDmsuLqEm.diag
[2026-01-16 02:09:55] -rw-rw-r-- 1 boinc boinc     22110 Jan 16 02:09 stderr.txt
[2026-01-16 02:09:55] HITS file was successfully produced:
[2026-01-16 02:09:55] -rw------- 1 boinc boinc 153801268 Jan 16 02:08 shared/HITS.pool.root.1
[2026-01-16 02:09:55]  *** Contents of shared directory: ***
[2026-01-16 02:09:55] total 734380
[2026-01-16 02:09:55] -rw-r--r-- 2 boinc boinc 596359366 Jan 16 00:34 ATLAS.root_0
[2026-01-16 02:09:55] -rw-r--r-- 2 boinc boinc     15847 Jan 16 00:34 start_atlas.sh
[2026-01-16 02:09:55] -rw-r--r-- 2 boinc boinc    592403 Jan 16 00:34 input.tar.gz
[2026-01-16 02:09:55] -rw------- 1 boinc boinc 153801268 Jan 16 02:08 HITS.pool.root.1
[2026-01-16 02:09:55] -rw------- 1 boinc boinc   1218560 Jan 16 02:09 result.tar.gz
02:09:57 (769522): run_atlas exited; CPU time 30294.279118
02:09:57 (769522): called boinc_finish(0)

</stderr_txt>
]]>

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