Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:05:19 (431191): wrapper (7.7.26015): starting
06:05:19 (431191): wrapper: running run_atlas (--nthreads 2)
[2026-01-15 06:05:19] Arguments: --nthreads 2
[2026-01-15 06:05:19] Threads: 2
[2026-01-15 06:05:19] Checking for CVMFS
[2026-01-15 06:05:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 06:05:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 06:05:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 06:05:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 06:05:19] 2.9.2.0 4141607 1671 56268 155156 0 57 20015935 36864001 0 130560 0 1317845 99.989 68838 3073 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-15 06:05:19] CVMFS is ok
[2026-01-15 06:05:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 06:05:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 06:05:19] Further information can be found at the LHC@home message board.
[2026-01-15 06:05:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 06:05:19] Checking for apptainer binary...
[2026-01-15 06:05:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 06:05:19] Running /usr/bin/apptainer --version
[2026-01-15 06:05:19] apptainer version 1.4.1-1.1
[2026-01-15 06:05:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 06:05:19] thA337
[2026-01-15 06:05:19] apptainer works
[2026-01-15 06:05:19] Set ATHENA_PROC_NUMBER=2
[2026-01-15 06:05:19] Set ATHENA_CORE_NUMBER=2
[2026-01-15 06:05:19] Starting ATLAS job with PandaID=6969632923
[2026-01-15 06:05:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 07:27:45]  *** The last 200 lines of the pilot log: ***
[2026-01-15 07:27:45] 2026-01-15 06:27:09,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 07:27:45] 2026-01-15 06:27:09,612 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 07:27:45] 2026-01-15 06:27:09,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 07:27:45] 2026-01-15 06:27:09,612 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 07:27:45] 2026-01-15 06:27:09,612 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 07:27:45] 2026-01-15 06:27:09,612 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 07:27:45] 2026-01-15 06:27:09,612 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 07:27:45] 2026-01-15 06:27:09,612 | INFO     | job 6969632923 has completed (purged errors)
[2026-01-15 07:27:45] 2026-01-15 06:27:09,612 | INFO     | overall cleanup function is called
[2026-01-15 07:27:45] 2026-01-15 06:27:10,619 | INFO     | --- collectZombieJob: --- 10, [441321]
[2026-01-15 07:27:45] 2026-01-15 06:27:10,620 | INFO     | zombie collector waiting for pid 441321
[2026-01-15 07:27:45] 2026-01-15 06:27:10,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 07:27:45] 2026-01-15 06:27:10,620 | INFO     | collected zombie processes
[2026-01-15 07:27:45] 2026-01-15 06:27:10,620 | INFO     | will attempt to kill all subprocesses of pid=441321
[2026-01-15 07:27:45] 2026-01-15 06:27:10,654 | INFO     | process IDs to be killed: [441321] (in reverse order)
[2026-01-15 07:27:45] 2026-01-15 06:27:10,675 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 07:27:45] 2026-01-15 06:27:10,675 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 07:27:45] 2026-01-15 06:27:10,676 | INFO     | did not find any defunct processes belonging to 441321
[2026-01-15 07:27:45] 2026-01-15 06:27:10,676 | INFO     | did not find any defunct processes belonging to 441321
[2026-01-15 07:27:45] 2026-01-15 06:27:10,676 | INFO     | ready for new job
[2026-01-15 07:27:45] 2026-01-15 06:27:10,677 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 07:27:45] 2026-01-15 06:27:10,677 | INFO     | ***************************************
[2026-01-15 07:27:45] 2026-01-15 06:27:10,677 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 07:27:45] 2026-01-15 06:27:10,677 | INFO     | ***************************************
[2026-01-15 07:27:45] 2026-01-15 06:27:10,677 | INFO     | 
[2026-01-15 07:27:45] 2026-01-15 06:27:10,677 | INFO     | architecture information:
[2026-01-15 07:27:45] 2026-01-15 06:27:10,677 | INFO     | executing command: cat /etc/os-release
[2026-01-15 07:27:45] 2026-01-15 06:27:10,685 | INFO     | cat /etc/os-release:
[2026-01-15 07:27:45] NAME="CentOS Linux"
[2026-01-15 07:27:45] VERSION="7 (Core)"
[2026-01-15 07:27:45] ID="centos"
[2026-01-15 07:27:45] ID_LIKE="rhel fedora"
[2026-01-15 07:27:45] VERSION_ID="7"
[2026-01-15 07:27:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 07:27:45] ANSI_COLOR="0;31"
[2026-01-15 07:27:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 07:27:45] HOME_URL="https://www.centos.org/"
[2026-01-15 07:27:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 07:27:45] 
[2026-01-15 07:27:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 07:27:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 07:27:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 07:27:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 07:27:45] 
[2026-01-15 07:27:45] 2026-01-15 06:27:10,685 | INFO     | ***************************************
[2026-01-15 07:27:45] 2026-01-15 06:27:11,189 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-15 07:27:45] 2026-01-15 06:27:11,201 | INFO     | sufficient remaining disk space (489861152768 B)
[2026-01-15 07:27:45] 2026-01-15 06:27:11,201 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 07:27:45] 2026-01-15 06:27:11,201 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 07:27:45] 2026-01-15 06:27:11,201 | INFO     | update_server=False
[2026-01-15 07:27:45] 2026-01-15 06:27:11,201 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 07:27:45] 2026-01-15 06:27:11,201 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 07:27:45] 2026-01-15 06:27:11,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:27:45] 2026-01-15 06:27:11,249 | INFO     | all data control threads have been joined
[2026-01-15 07:27:45] 2026-01-15 06:27:11,546 | INFO     | all payload control threads have been joined
[2026-01-15 07:27:45] 2026-01-15 06:27:11,648 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 07:27:45] 2026-01-15 06:27:11,648 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 07:27:45] 2026-01-15 06:27:11,648 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 07:27:45] 2026-01-15 06:27:11,649 | INFO     | will abort loop
[2026-01-15 07:27:45] 2026-01-15 06:27:12,154 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 07:27:45] 2026-01-15 06:27:12,207 | INFO     | [job] retrieve thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:12,207 | INFO     | [job] queue monitor thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:12,218 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:12,255 | INFO     | [data] control thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:12,365 | INFO     | all job control threads have been joined
[2026-01-15 07:27:45] 2026-01-15 06:27:12,419 | INFO     | [payload] failed_post thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:12,552 | INFO     | [payload] control thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:12,654 | INFO     | [job] job monitor thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:12,742 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:13,193 | INFO     | [data] copytool_in thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:13,371 | INFO     | [job] control thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:13,526 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:13,664 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:13,666 | INFO     | [job] validate thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:13,681 | INFO     | [payload] validate_post thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:14,160 | INFO     | [data] copytool_out thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:15,208 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 07:27:45] 2026-01-15 06:27:39,431 | INFO     | [monitor] cgroup control has ended
[2026-01-15 07:27:45] 2026-01-15 06:27:40,315 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140254390150976)>', '<ExcThread(monitor, started 140253734090496)>']
[2026-01-15 07:27:45] 2026-01-15 06:27:41,617 | INFO     | PID=434900 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 07:27:45] 2026-01-15 06:27:41,617 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 07:27:45] 2026-01-15 06:27:41,618 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 07:27:45] 2026-01-15 06:27:41,618 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 07:27:45] 2026-01-15 06:27:41,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 07:27:45] 2026-01-15 06:27:41,618 | INFO     | [monitor] control thread has ended
[2026-01-15 07:27:45] 2026-01-15 06:27:45,340 | INFO     | all workflow threads have been joined
[2026-01-15 07:27:45] 2026-01-15 06:27:45,341 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 07:27:45] 2026-01-15 06:27:45,341 | INFO     | traces error code: 0
[2026-01-15 07:27:45] 2026-01-15 06:27:45,342 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 07:27:45] 2026-01-15 06:27:45,383 [wrapper] ==== pilot stdout END ====
[2026-01-15 07:27:45] 2026-01-15 06:27:45,386 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 07:27:45] 2026-01-15 06:27:45,388 [wrapper] pilotpid: 434900
[2026-01-15 07:27:45] 2026-01-15 06:27:45,390 [wrapper] Pilot exit status: 0
[2026-01-15 07:27:45] 2026-01-15 06:27:45,396 [wrapper] pandaids: 6969632923
[2026-01-15 07:27:45] 2026-01-15 06:27:45,407 [wrapper] cleanup supervisor_pilot  452828 434901
[2026-01-15 07:27:45] 2026-01-15 06:27:45,409 [wrapper] Test setup, not cleaning
[2026-01-15 07:27:45] 2026-01-15 06:27:45,411 [wrapper] apfmon messages muted
[2026-01-15 07:27:45] 2026-01-15 06:27:45,413 [wrapper] ==== wrapper stdout END ====
[2026-01-15 07:27:45] 2026-01-15 06:27:45,415 [wrapper] ==== wrapper stderr END ====
[2026-01-15 07:27:45]  *** Error codes and diagnostics ***
[2026-01-15 07:27:45]     "exeErrorCode": 0,
[2026-01-15 07:27:45]     "exeErrorDiag": "",
[2026-01-15 07:27:45]     "pilotErrorCode": 0,
[2026-01-15 07:27:45]     "pilotErrorDiag": "",
[2026-01-15 07:27:45]  *** Listing of results directory ***
[2026-01-15 07:27:45] total 744832
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc      5112 Jan 14 21:15 queuedata.json
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc    579449 Jan 14 21:15 pilot3.tar.gz
[2026-01-15 07:27:45] -rwx------ 1 boinc boinc     36322 Jan 14 21:16 runpilot2-wrapper.sh
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc       100 Jan 15 06:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 07:27:45] -rwxr-xr-x 1 boinc boinc      7986 Jan 15 06:05 run_atlas
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc       105 Jan 15 06:05 job.xml
[2026-01-15 07:27:45] -rw-r--r-- 2 boinc boinc 606265804 Jan 15 06:05 EVNT.32794306._001378.pool.root.1
[2026-01-15 07:27:45] -rw-r--r-- 2 boinc boinc    592402 Jan 15 06:05 input.tar.gz
[2026-01-15 07:27:45] -rw-r--r-- 2 boinc boinc     15847 Jan 15 06:05 start_atlas.sh
[2026-01-15 07:27:45] drwxrwx--x 2 boinc boinc      4096 Jan 15 06:05 shared
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc         0 Jan 15 06:05 boinc_setup_complete
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc      6206 Jan 15 06:05 init_data.xml
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc         0 Jan 15 06:05 boinc_lockfile
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc      2509 Jan 15 06:05 pandaJob.out
[2026-01-15 07:27:45] -rw------- 1 boinc boinc    999472 Jan 15 06:05 agis_schedconf.cvmfs.json
[2026-01-15 07:27:45] -rw------- 1 boinc boinc   1516246 Jan 15 06:05 agis_ddmendpoints.agis.ALL.json
[2026-01-15 07:27:45] drwx------ 5 boinc boinc      4096 Jan 15 06:05 pilot3
[2026-01-15 07:27:45] -rw------- 1 boinc boinc 150595474 Jan 15 07:26 HITS.48215263._034478.pool.root.1
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc       529 Jan 15 07:26 boinc_task_state.xml
[2026-01-15 07:27:45] -rw------- 1 boinc boinc      1010 Jan 15 07:26 memory_monitor_summary.json
[2026-01-15 07:27:45] -rw------- 1 boinc boinc        95 Jan 15 07:26 pilot_heartbeat.json
[2026-01-15 07:27:45] -rw------- 1 boinc boinc    248496 Jan 15 07:26 log.48215263._034478.job.log.tgz.1
[2026-01-15 07:27:45] -rw------- 1 boinc boinc      7740 Jan 15 07:27 heartbeat.json
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc        26 Jan 15 07:27 wrapper_checkpoint.txt
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc      8192 Jan 15 07:27 boinc_mmap_file
[2026-01-15 07:27:45] -rw------- 1 boinc boinc      4937 Jan 15 07:27 pilotlog.txt
[2026-01-15 07:27:45] -rw------- 1 boinc boinc    720106 Jan 15 07:27 log.48215263._034478.job.log.1
[2026-01-15 07:27:45] -rw------- 1 boinc boinc       357 Jan 15 07:27 output.list
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc       620 Jan 15 07:27 runtime_log
[2026-01-15 07:27:45] -rw------- 1 boinc boinc    983040 Jan 15 07:27 result.tar.gz
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc      8897 Jan 15 07:27 runtime_log.err
[2026-01-15 07:27:45] -rw------- 1 boinc boinc       656 Jan 15 07:27 20JMDmKTM08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7ZsKDmZPrsFm.diag
[2026-01-15 07:27:45] -rw-r--r-- 1 boinc boinc     11740 Jan 15 07:27 stderr.txt
[2026-01-15 07:27:45] HITS file was successfully produced:
[2026-01-15 07:27:45] -rw------- 1 boinc boinc 150595474 Jan 15 07:26 shared/HITS.pool.root.1
[2026-01-15 07:27:45]  *** Contents of shared directory: ***
[2026-01-15 07:27:45] total 740692
[2026-01-15 07:27:45] -rw-r--r-- 2 boinc boinc 606265804 Jan 15 06:05 ATLAS.root_0
[2026-01-15 07:27:45] -rw-r--r-- 2 boinc boinc    592402 Jan 15 06:05 input.tar.gz
[2026-01-15 07:27:45] -rw-r--r-- 2 boinc boinc     15847 Jan 15 06:05 start_atlas.sh
[2026-01-15 07:27:45] -rw------- 1 boinc boinc 150595474 Jan 15 07:26 HITS.pool.root.1
[2026-01-15 07:27:45] -rw------- 1 boinc boinc    983040 Jan 15 07:27 result.tar.gz
07:27:47 (431191): run_atlas exited; CPU time 9375.014555
07:27:47 (431191): called boinc_finish(0)

</stderr_txt>
]]>

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