Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:11:18 (321316): wrapper (7.7.26015): starting
14:11:18 (321316): wrapper: running run_atlas (--nthreads 5)
[2026-01-14 14:11:18] Arguments: --nthreads 5
[2026-01-14 14:11:18] Threads: 5
[2026-01-14 14:11:18] Checking for CVMFS
[2026-01-14 14:11:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 14:11:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 14:11:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 14:11:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 14:11:23] 2.13.3.0 321527 0 29732 155145 3 1 4414723 10240001 0 130560 0 0 100.000 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2026-01-14 14:11:23] CVMFS is ok
[2026-01-14 14:11:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 14:11:23] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-14 14:11:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-14 14:11:23] Further information can be found at the LHC@home message board.
[2026-01-14 14:11:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 14:11:23] Checking for apptainer binary...
[2026-01-14 14:11:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 14:11:23] Running /usr/bin/apptainer --version
[2026-01-14 14:11:24] apptainer version 1.4.5
[2026-01-14 14:11:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 14:11:24] boinc-cte
[2026-01-14 14:11:24] apptainer works
[2026-01-14 14:11:24] Set ATHENA_PROC_NUMBER=5
[2026-01-14 14:11:24] Set ATHENA_CORE_NUMBER=5
[2026-01-14 14:11:24] Starting ATLAS job with PandaID=6969524381
[2026-01-14 14:11:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 15:00:55]  *** The last 200 lines of the pilot log: ***
[2026-01-14 15:00:55]  surl=/var/lib/boinc-client/slots/4/PanDA_Pilot-6969524381/log.48215263._028448.job.log.tgz.1
[2026-01-14 15:00:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/c9/log.48215263._028448.job.log.tgz.1
[2026-01-14 15:00:55]  workdir=None
[2026-01-14 15:00:55] ]
[2026-01-14 15:00:55] 2026-01-14 23:00:04,491 | INFO     | transferring file log.48215263._028448.job.log.tgz.1 from /var/lib/boinc-client/slots/4/PanDA_Pilot-6969524381/log.48215263._028448.job.log.tgz.1 to /var/lib/boinc
[2026-01-14 15:00:55] 2026-01-14 23:00:04,491 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-6969524381/log.48215263._028448.job.log.tgz.1 /var/lib/boinc-client/slots/4/log.482152
[2026-01-14 15:00:55] 2026-01-14 23:00:04,509 | INFO     | adding to output.list: log.48215263._028448.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a8/c9/log.48215263._028448.job.log.tg
[2026-01-14 15:00:55] 2026-01-14 23:00:04,510 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-14 15:00:55] 2026-01-14 23:00:04,510 | INFO     | summary of transferred files:
[2026-01-14 15:00:55] 2026-01-14 23:00:04,510 | INFO     |  -- lfn=log.48215263._028448.job.log.tgz.1, status_code=0, status=transferred
[2026-01-14 15:00:55] 2026-01-14 23:00:04,510 | INFO     | stage-out finished correctly
[2026-01-14 15:00:55] 2026-01-14 23:00:04,577 | INFO     | time since job start (2899s) is within the limit (349056.0s)
[2026-01-14 15:00:55] 2026-01-14 23:00:06,294 | INFO     | monitor loop #225: job 0:6969524381 is in state 'finished'
[2026-01-14 15:00:55] 2026-01-14 23:00:06,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:00:55] 2026-01-14 23:00:06,583 | INFO     | time since job start (2901s) is within the limit (349056.0s)
[2026-01-14 15:00:55] 2026-01-14 23:00:07,024 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-14 15:00:55] 2026-01-14 23:00:07,079 | INFO     | job 6969524381 has state=finished
[2026-01-14 15:00:55] 2026-01-14 23:00:07,079 | INFO     | preparing for final server update for job 6969524381 in state='finished'
[2026-01-14 15:00:55] 2026-01-14 23:00:07,080 | INFO     | this job has now completed (state=finished)
[2026-01-14 15:00:55] 2026-01-14 23:00:07,080 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 15:00:55] 2026-01-14 23:00:07,080 | INFO     | log transfer has been attempted: DONE
[2026-01-14 15:00:55] 2026-01-14 23:00:07,080 | INFO     | job 6969524381 has finished - writing final server update
[2026-01-14 15:00:55] 2026-01-14 23:00:07,080 | INFO     | total number of processed events: 400 (read)
[2026-01-14 15:00:55] 2026-01-14 23:00:07,082 | INFO     | executing command: lscpu
[2026-01-14 15:00:55] 2026-01-14 23:00:07,109 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 15:00:55] 2026-01-14 23:00:08,588 | INFO     | time since job start (2903s) is within the limit (349056.0s)
[2026-01-14 15:00:55] 2026-01-14 23:00:08,798 | INFO     | monitor loop #226: job 0:6969524381 is in state 'finished'
[2026-01-14 15:00:55] 2026-01-14 23:00:08,798 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:00:55] 2026-01-14 23:00:10,592 | INFO     | time since job start (2905s) is within the limit (349056.0s)
[2026-01-14 15:00:55] 2026-01-14 23:00:11,299 | INFO     | monitor loop #227: job 0:6969524381 is in state 'finished'
[2026-01-14 15:00:55] 2026-01-14 23:00:11,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:00:55] 2026-01-14 23:00:12,595 | INFO     | time since job start (2907s) is within the limit (349056.0s)
[2026-01-14 15:00:55] 2026-01-14 23:00:13,803 | INFO     | monitor loop #228: job 0:6969524381 is in state 'finished'
[2026-01-14 15:00:55] 2026-01-14 23:00:13,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:00:55] 2026-01-14 23:00:14,599 | INFO     | time since job start (2909s) is within the limit (349056.0s)
[2026-01-14 15:00:55] 2026-01-14 23:00:16,306 | INFO     | monitor loop #229: job 0:6969524381 is in state 'finished'
[2026-01-14 15:00:55] 2026-01-14 23:00:16,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 15:00:55] 2026-01-14 23:00:16,603 | INFO     | time since job start (2911s) is within the limit (349056.0s)
[2026-01-14 15:00:55] 2026-01-14 23:00:17,390 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-14 15:00:55] 2026-01-14 23:00:17,391 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3800.091
[2026-01-14 15:00:55] 2026-01-14 23:00:17,392 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6969524381/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 15:00:55] 2026-01-14 23:00:17,392 | INFO     | extracted standard info from prmon json
[2026-01-14 15:00:55] 2026-01-14 23:00:17,392 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 15:00:55] 2026-01-14 23:00:17,392 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 15:00:55] 2026-01-14 23:00:17,392 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 15:00:55] 2026-01-14 23:00:17,392 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 15:00:55] 2026-01-14 23:00:17,393 | INFO     | fitting pss+swap vs Time
[2026-01-14 15:00:55] 2026-01-14 23:00:17,393 | INFO     | sum of square deviations: 19832930.0
[2026-01-14 15:00:55] 2026-01-14 23:00:17,393 | INFO     | sum of deviations: 368842508.5
[2026-01-14 15:00:55] 2026-01-14 23:00:17,393 | INFO     | mean x: 1768430230.5
[2026-01-14 15:00:55] 2026-01-14 23:00:17,393 | INFO     | mean y: 2566905.125
[2026-01-14 15:00:55] 2026-01-14 23:00:17,393 | INFO     | intersect: -32885778000.285
[2026-01-14 15:00:55] 2026-01-14 23:00:17,393 | INFO     | chi2: 0.00032576416863610343
[2026-01-14 15:00:55] 2026-01-14 23:00:17,393 | INFO     | current memory leak: 18.60 B/s (using 40 data points, chi2=0.00)
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | could have reported an average CPU frequency of 3800 MHz (5 samples)
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | ..............................
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | . Timing measurements:
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | . get job = 0 s
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | . initial setup = 3 s
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | . payload setup = 8 s
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | . stage-in = 0 s
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | . payload execution = 2869 s
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | . stage-out = 0 s
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | . log creation = 0 s
[2026-01-14 15:00:55] 2026-01-14 23:00:17,394 | INFO     | ..............................
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | 
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | job summary report
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | --------------------------------------------------
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | PanDA job id: 6969524381
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | task id: 48215263
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | errors: (none)
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | pilot state: finished 
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | transexitcode: 0
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | exeerrorcode: 0
[2026-01-14 15:00:55] 2026-01-14 23:00:17,438 | INFO     | exeerrordiag: 
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | exitcode: 0
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | exitmsg: OK
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | cpuconsumptiontime: 13366 s
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | nevents: 400
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | neventsw: 0
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | pid: 332057
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | pgrp: 332057
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | corecount: 5
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | event service: False
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | sizes: {0: 2283986, 6: 2284248, 11: 2284276, 2881: 2309561, 2882: 2318573, 2884: 2318629, 2895: 2318983}
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | --------------------------------------------------
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | 
[2026-01-14 15:00:55] 2026-01-14 23:00:17,439 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,470 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,471 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 15:00:55] 2026-01-14 23:00:17,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,471 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 15:00:55] 2026-01-14 23:00:17,471 | INFO     | job 6969524381 has completed (purged errors)
[2026-01-14 15:00:55] 2026-01-14 23:00:17,471 | INFO     | overall cleanup function is called
[2026-01-14 15:00:55] 2026-01-14 23:00:18,478 | INFO     | --- collectZombieJob: --- 10, [332057]
[2026-01-14 15:00:55] 2026-01-14 23:00:18,478 | INFO     | zombie collector waiting for pid 332057
[2026-01-14 15:00:55] 2026-01-14 23:00:18,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 15:00:55] 2026-01-14 23:00:18,479 | INFO     | collected zombie processes
[2026-01-14 15:00:55] 2026-01-14 23:00:18,479 | INFO     | will attempt to kill all subprocesses of pid=332057
[2026-01-14 15:00:55] 2026-01-14 23:00:18,515 | INFO     | process IDs to be killed: [332057] (in reverse order)
[2026-01-14 15:00:55] 2026-01-14 23:00:18,551 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 15:00:55] 2026-01-14 23:00:18,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 15:00:55] 2026-01-14 23:00:18,553 | INFO     | did not find any defunct processes belonging to 332057
[2026-01-14 15:00:55] 2026-01-14 23:00:18,554 | INFO     | did not find any defunct processes belonging to 332057
[2026-01-14 15:00:55] 2026-01-14 23:00:18,554 | INFO     | ready for new job
[2026-01-14 15:00:55] 2026-01-14 23:00:18,554 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 15:00:55] 2026-01-14 23:00:18,555 | INFO     | ***************************************
[2026-01-14 15:00:55] 2026-01-14 23:00:18,555 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 15:00:55] 2026-01-14 23:00:18,555 | INFO     | ***************************************
[2026-01-14 15:00:55] 2026-01-14 23:00:18,555 | INFO     | 
[2026-01-14 15:00:55] 2026-01-14 23:00:18,555 | INFO     | architecture information:
[2026-01-14 15:00:55] 2026-01-14 23:00:18,555 | INFO     | executing command: cat /etc/os-release
[2026-01-14 15:00:55] 2026-01-14 23:00:18,655 | INFO     | cat /etc/os-release:
[2026-01-14 15:00:55] NAME="CentOS Linux"
[2026-01-14 15:00:55] VERSION="7 (Core)"
[2026-01-14 15:00:55] ID="centos"
[2026-01-14 15:00:55] ID_LIKE="rhel fedora"
[2026-01-14 15:00:55] VERSION_ID="7"
[2026-01-14 15:00:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 15:00:55] ANSI_COLOR="0;31"
[2026-01-14 15:00:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 15:00:55] HOME_URL="https://www.centos.org/"
[2026-01-14 15:00:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 15:00:55] 
[2026-01-14 15:00:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 15:00:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 15:00:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 15:00:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 15:00:55] 
[2026-01-14 15:00:55] 2026-01-14 23:00:18,655 | INFO     | ***************************************
[2026-01-14 15:00:55] 2026-01-14 23:00:19,158 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2026-01-14 15:00:55] 2026-01-14 23:00:19,185 | INFO     | sufficient remaining disk space (41577086976 B)
[2026-01-14 15:00:55] 2026-01-14 23:00:19,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 15:00:55] 2026-01-14 23:00:19,186 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 15:00:55] 2026-01-14 23:00:19,186 | INFO     | update_server=False
[2026-01-14 15:00:55] 2026-01-14 23:00:19,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 15:00:55] 2026-01-14 23:00:19,186 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:00:55] 2026-01-14 23:00:19,191 | INFO     | all job control threads have been joined
[2026-01-14 15:00:55] 2026-01-14 23:00:19,283 | INFO     | all data control threads have been joined
[2026-01-14 15:00:55] 2026-01-14 23:00:19,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 15:00:55] 2026-01-14 23:00:19,813 | INFO     | aborting loop
[2026-01-14 15:00:55] 2026-01-14 23:00:20,119 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 15:00:55] 2026-01-14 23:00:20,187 | INFO     | [job] retrieve thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:20,191 | INFO     | [job] queue monitor thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:20,195 | INFO     | [job] control thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:20,289 | INFO     | [data] control thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:20,327 | INFO     | all payload control threads have been joined
[2026-01-14 15:00:55] 2026-01-14 23:00:20,335 | INFO     | [payload] failed_post thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:20,818 | INFO     | [job] job monitor thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:21,016 | INFO     | [job] validate thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:21,073 | INFO     | [payload] validate_post thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:21,120 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:21,332 | INFO     | [payload] control thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:21,354 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:21,451 | INFO     | [data] copytool_in thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:21,520 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:22,091 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 15:00:55] 2026-01-14 23:00:22,123 | INFO     | [data] copytool_out thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:26,097 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:29,552 | INFO     | job.realtimelogging is not enabled
[2026-01-14 15:00:55] 2026-01-14 23:00:30,555 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 15:00:55] 2026-01-14 23:00:48,866 | INFO     | [monitor] cgroup control has ended
[2026-01-14 15:00:55] 2026-01-14 23:00:49,725 | INFO     | PID=325618 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 15:00:55] 2026-01-14 23:00:49,726 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 15:00:55] 2026-01-14 23:00:49,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 15:00:55] 2026-01-14 23:00:49,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 15:00:55] 2026-01-14 23:00:50,007 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140511260452672)>', '<ExcThread(monitor, started 140510316455680)>']
[2026-01-14 15:00:55] 2026-01-14 23:00:50,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 15:00:55] 2026-01-14 23:00:50,741 | INFO     | [monitor] control thread has ended
[2026-01-14 15:00:55] 2026-01-14 23:00:55,033 | INFO     | all workflow threads have been joined
[2026-01-14 15:00:55] 2026-01-14 23:00:55,210 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 15:00:55] 2026-01-14 23:00:55,211 | INFO     | traces error code: 0
[2026-01-14 15:00:55] 2026-01-14 23:00:55,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 15:00:55] 2026-01-14 23:00:55,313 [wrapper] ==== pilot stdout END ====
[2026-01-14 15:00:55] 2026-01-14 23:00:55,316 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 15:00:55] 2026-01-14 23:00:55,319 [wrapper] pilotpid: 325618
[2026-01-14 15:00:55] 2026-01-14 23:00:55,321 [wrapper] Pilot exit status: 0
[2026-01-14 15:00:55] 2026-01-14 23:00:55,336 [wrapper] pandaids: 6969524381
[2026-01-14 15:00:55] 2026-01-14 23:00:55,355 [wrapper] cleanup supervisor_pilot  341016 325619
[2026-01-14 15:00:55] 2026-01-14 23:00:55,361 [wrapper] Test setup, not cleaning
[2026-01-14 15:00:55] 2026-01-14 23:00:55,365 [wrapper] apfmon messages muted
[2026-01-14 15:00:55] 2026-01-14 23:00:55,368 [wrapper] ==== wrapper stdout END ====
[2026-01-14 15:00:55] 2026-01-14 23:00:55,371 [wrapper] ==== wrapper stderr END ====
[2026-01-14 15:00:55]  *** Error codes and diagnostics ***
[2026-01-14 15:00:55]     "exeErrorCode": 0,
[2026-01-14 15:00:55]     "exeErrorDiag": "",
[2026-01-14 15:00:55]     "pilotErrorCode": 0,
[2026-01-14 15:00:55]     "pilotErrorDiag": "",
[2026-01-14 15:00:55]  *** Listing of results directory ***
[2026-01-14 15:00:55] total 744676
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc    579449 Jan 14 08:41 pilot3.tar.gz
[2026-01-14 15:00:55] -rwx------ 1 boinc boinc     36322 Jan 14 08:43 runpilot2-wrapper.sh
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc      5112 Jan 14 08:44 queuedata.json
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc       100 Jan 14 14:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 15:00:55] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 14:11 run_atlas
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc       105 Jan 14 14:11 job.xml
[2026-01-14 15:00:55] -rw-r--r-- 2 boinc boinc     15847 Jan 14 14:11 start_atlas.sh
[2026-01-14 15:00:55] drwxrwx--x 2 boinc boinc      4096 Jan 14 14:11 shared
[2026-01-14 15:00:55] -rw-r--r-- 2 boinc boinc    592402 Jan 14 14:11 input.tar.gz
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc      6589 Jan 14 14:11 init_data.xml
[2026-01-14 15:00:55] -rw-r--r-- 2 boinc boinc 598272329 Jan 14 14:11 EVNT.32794306._001139.pool.root.1
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc         0 Jan 14 14:11 boinc_lockfile
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc      2508 Jan 14 14:11 pandaJob.out
[2026-01-14 15:00:55] -rw------- 1 boinc boinc    999596 Jan 14 14:11 agis_schedconf.cvmfs.json
[2026-01-14 15:00:55] -rw------- 1 boinc boinc   1516246 Jan 14 14:11 agis_ddmendpoints.agis.ALL.json
[2026-01-14 15:00:55] drwx------ 5 boinc boinc      4096 Jan 14 14:11 pilot3
[2026-01-14 15:00:55] -rw------- 1 boinc boinc 158951537 Jan 14 14:59 HITS.48215263._028448.pool.root.1
[2026-01-14 15:00:55] -rw------- 1 boinc boinc        95 Jan 14 14:59 pilot_heartbeat.json
[2026-01-14 15:00:55] -rw------- 1 boinc boinc      1011 Jan 14 15:00 memory_monitor_summary.json
[2026-01-14 15:00:55] -rw------- 1 boinc boinc    246726 Jan 14 15:00 log.48215263._028448.job.log.tgz.1
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc       530 Jan 14 15:00 boinc_task_state.xml
[2026-01-14 15:00:55] -rw------- 1 boinc boinc      7728 Jan 14 15:00 heartbeat.json
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc        27 Jan 14 15:00 wrapper_checkpoint.txt
[2026-01-14 15:00:55] -rw------- 1 boinc boinc      4826 Jan 14 15:00 pilotlog.txt
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc      8192 Jan 14 15:00 boinc_mmap_file
[2026-01-14 15:00:55] -rw------- 1 boinc boinc    451408 Jan 14 15:00 log.48215263._028448.job.log.1
[2026-01-14 15:00:55] -rw------- 1 boinc boinc       357 Jan 14 15:00 output.list
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc       620 Jan 14 15:00 runtime_log
[2026-01-14 15:00:55] -rw------- 1 boinc boinc    716800 Jan 14 15:00 result.tar.gz
[2026-01-14 15:00:55] -rw------- 1 boinc boinc       640 Jan 14 15:00 taMKDmU9I08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmahlKDm4Yicbn.diag
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc      8919 Jan 14 15:00 runtime_log.err
[2026-01-14 15:00:55] -rw-r--r-- 1 boinc boinc     22378 Jan 14 15:00 stderr.txt
[2026-01-14 15:00:55] HITS file was successfully produced:
[2026-01-14 15:00:55] -rw------- 1 boinc boinc 158951537 Jan 14 14:59 shared/HITS.pool.root.1
[2026-01-14 15:00:55]  *** Contents of shared directory: ***
[2026-01-14 15:00:55] total 740784
[2026-01-14 15:00:55] -rw-r--r-- 2 boinc boinc     15847 Jan 14 14:11 start_atlas.sh
[2026-01-14 15:00:55] -rw-r--r-- 2 boinc boinc    592402 Jan 14 14:11 input.tar.gz
[2026-01-14 15:00:55] -rw-r--r-- 2 boinc boinc 598272329 Jan 14 14:11 ATLAS.root_0
[2026-01-14 15:00:55] -rw------- 1 boinc boinc 158951537 Jan 14 14:59 HITS.pool.root.1
[2026-01-14 15:00:55] -rw------- 1 boinc boinc    716800 Jan 14 15:00 result.tar.gz
15:00:57 (321316): run_atlas exited; CPU time 13382.065558
15:00:57 (321316): called boinc_finish(0)

</stderr_txt>
]]>

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