Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
20:56:37 (508394): wrapper (7.7.26015): starting
20:56:37 (508394): wrapper: running run_atlas (--nthreads 8)
[2026-01-14 20:56:37] Arguments: --nthreads 8
[2026-01-14 20:56:37] Threads: 8
[2026-01-14 20:56:37] Checking for CVMFS
[2026-01-14 20:56:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 20:56:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 20:56:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 20:56:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 20:56:38] 2.13.3.0 484029 74 45880 155144 2 57 3212974 4096000 0 130560 0 67195 99.982 4215 603 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-14 20:56:38] CVMFS is ok
[2026-01-14 20:56:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 20:56:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 20:56:38] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-14 20:56:38] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-14 20:56:38] Further information can be found at the LHC@home message board.
[2026-01-14 20:56:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 20:56:38] Checking for apptainer binary...
[2026-01-14 20:56:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 20:56:38] Running /usr/bin/apptainer --version
[2026-01-14 20:56:38] apptainer version 1.4.5
[2026-01-14 20:56:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 20:56:38] lab01ubuntu
[2026-01-14 20:56:38] apptainer works
[2026-01-14 20:56:38] Set ATHENA_PROC_NUMBER=8
[2026-01-14 20:56:38] Set ATHENA_CORE_NUMBER=8
[2026-01-14 20:56:38] Starting ATLAS job with PandaID=6969522019
[2026-01-14 20:56:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 22:10:13]  *** The last 200 lines of the pilot log: ***
[2026-01-14 22:10:13] 2026-01-14 22:09:21,206 | INFO     | time since job start (4348s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:21,919 | INFO     | job 6969522019 has state=finished
[2026-01-14 22:10:13] 2026-01-14 22:09:21,919 | INFO     | preparing for final server update for job 6969522019 in state='finished'
[2026-01-14 22:10:13] 2026-01-14 22:09:21,921 | INFO     | this job has now completed (state=finished)
[2026-01-14 22:10:13] 2026-01-14 22:09:21,921 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-14 22:10:13] 2026-01-14 22:09:21,921 | INFO     | log transfer has been attempted: DONE
[2026-01-14 22:10:13] 2026-01-14 22:09:21,922 | INFO     | job 6969522019 has finished - writing final server update
[2026-01-14 22:10:13] 2026-01-14 22:09:21,922 | INFO     | total number of processed events: 400 (read)
[2026-01-14 22:10:13] 2026-01-14 22:09:21,925 | INFO     | executing command: lscpu
[2026-01-14 22:10:13] 2026-01-14 22:09:21,968 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-14 22:10:13] 2026-01-14 22:09:22,709 | INFO     | monitor loop #336: job 0:6969522019 is in state 'finished'
[2026-01-14 22:10:13] 2026-01-14 22:09:22,710 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 22:10:13] 2026-01-14 22:09:23,215 | INFO     | time since job start (4350s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:25,212 | INFO     | monitor loop #337: job 0:6969522019 is in state 'finished'
[2026-01-14 22:10:13] 2026-01-14 22:09:25,212 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 22:10:13] 2026-01-14 22:09:25,221 | INFO     | time since job start (4352s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:27,228 | INFO     | time since job start (4354s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:27,715 | INFO     | monitor loop #338: job 0:6969522019 is in state 'finished'
[2026-01-14 22:10:13] 2026-01-14 22:09:27,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 22:10:13] 2026-01-14 22:09:29,234 | INFO     | time since job start (4356s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:30,218 | INFO     | monitor loop #339: job 0:6969522019 is in state 'finished'
[2026-01-14 22:10:13] 2026-01-14 22:09:30,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 22:10:13] 2026-01-14 22:09:31,240 | INFO     | time since job start (4358s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:31,240 | INFO     | 4362s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-14 22:10:13] 2026-01-14 22:09:32,722 | INFO     | monitor loop #340: job 0:6969522019 is in state 'finished'
[2026-01-14 22:10:13] 2026-01-14 22:09:32,723 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 22:10:13] 2026-01-14 22:09:33,246 | INFO     | time since job start (4360s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:35,227 | INFO     | monitor loop #341: job 0:6969522019 is in state 'finished'
[2026-01-14 22:10:13] 2026-01-14 22:09:35,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 22:10:13] 2026-01-14 22:09:35,258 | INFO     | time since job start (4362s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:37,264 | INFO     | time since job start (4364s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:37,731 | INFO     | monitor loop #342: job 0:6969522019 is in state 'finished'
[2026-01-14 22:10:13] 2026-01-14 22:09:37,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 22:10:13] 2026-01-14 22:09:39,271 | INFO     | time since job start (4366s) is within the limit (349056.0s)
[2026-01-14 22:10:13] 2026-01-14 22:09:40,236 | INFO     | monitor loop #343: job 0:6969522019 is in state 'finished'
[2026-01-14 22:10:13] 2026-01-14 22:09:40,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-14 22:10:13] 2026-01-14 22:09:40,442 | INFO     | PID=512109 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 22:10:13] 2026-01-14 22:09:41,180 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-14 22:10:13] 2026-01-14 22:09:41,182 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 2893.0279999999993
[2026-01-14 22:10:13] 2026-01-14 22:09:41,185 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6969522019/memory_monitor_summary.json (trf name=prmon)
[2026-01-14 22:10:13] 2026-01-14 22:09:41,187 | INFO     | extracted standard info from prmon json
[2026-01-14 22:10:13] 2026-01-14 22:09:41,187 | INFO     | extracted standard memory fields from prmon json
[2026-01-14 22:10:13] 2026-01-14 22:09:41,187 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-14 22:10:13] 2026-01-14 22:09:41,188 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-14 22:10:13] 2026-01-14 22:09:41,189 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-14 22:10:13] 2026-01-14 22:09:41,192 | INFO     | fitting pss+swap vs Time
[2026-01-14 22:10:13] 2026-01-14 22:09:41,193 | INFO     | sum of square deviations: 81266640.0
[2026-01-14 22:10:13] 2026-01-14 22:09:41,194 | INFO     | sum of deviations: -1174547466.5
[2026-01-14 22:10:13] 2026-01-14 22:09:41,194 | INFO     | mean x: 1768426508.5
[2026-01-14 22:10:13] 2026-01-14 22:09:41,195 | INFO     | mean y: 2601978.578125
[2026-01-14 22:10:13] 2026-01-14 22:09:41,195 | INFO     | intersect: 25561685942.79906
[2026-01-14 22:10:13] 2026-01-14 22:09:41,196 | INFO     | chi2: 0.34600256564325216
[2026-01-14 22:10:13] 2026-01-14 22:09:41,196 | INFO     | current memory leak: -14.45 B/s (using 64 data points, chi2=0.35)
[2026-01-14 22:10:13] 2026-01-14 22:09:41,197 | INFO     | could have reported an average CPU frequency of 2893 MHz (6 samples)
[2026-01-14 22:10:13] 2026-01-14 22:09:41,197 | INFO     | ..............................
[2026-01-14 22:10:13] 2026-01-14 22:09:41,198 | INFO     | . Timing measurements:
[2026-01-14 22:10:13] 2026-01-14 22:09:41,198 | INFO     | . get job = 0 s
[2026-01-14 22:10:13] 2026-01-14 22:09:41,198 | INFO     | . initial setup = 4 s
[2026-01-14 22:10:13] 2026-01-14 22:09:41,199 | INFO     | . payload setup = 15 s
[2026-01-14 22:10:13] 2026-01-14 22:09:41,199 | INFO     | . stage-in = 0 s
[2026-01-14 22:10:13] 2026-01-14 22:09:41,199 | INFO     | . payload execution = 4282 s
[2026-01-14 22:10:13] 2026-01-14 22:09:41,200 | INFO     | . stage-out = 0 s
[2026-01-14 22:10:13] 2026-01-14 22:09:41,200 | INFO     | . log creation = 0 s
[2026-01-14 22:10:13] 2026-01-14 22:09:41,200 | INFO     | ..............................
[2026-01-14 22:10:13] 2026-01-14 22:09:41,380 | INFO     | 
[2026-01-14 22:10:13] 2026-01-14 22:09:41,381 | INFO     | job summary report
[2026-01-14 22:10:13] 2026-01-14 22:09:41,381 | INFO     | --------------------------------------------------
[2026-01-14 22:10:13] 2026-01-14 22:09:41,382 | INFO     | PanDA job id: 6969522019
[2026-01-14 22:10:13] 2026-01-14 22:09:41,382 | INFO     | task id: 48215263
[2026-01-14 22:10:13] 2026-01-14 22:09:41,382 | INFO     | errors: (none)
[2026-01-14 22:10:13] 2026-01-14 22:09:41,383 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-14 22:10:13] 2026-01-14 22:09:41,383 | INFO     | pilot state: finished 
[2026-01-14 22:10:13] 2026-01-14 22:09:41,383 | INFO     | transexitcode: 0
[2026-01-14 22:10:13] 2026-01-14 22:09:41,384 | INFO     | exeerrorcode: 0
[2026-01-14 22:10:13] 2026-01-14 22:09:41,384 | INFO     | exeerrordiag: 
[2026-01-14 22:10:13] 2026-01-14 22:09:41,384 | INFO     | exitcode: 0
[2026-01-14 22:10:13] 2026-01-14 22:09:41,384 | INFO     | exitmsg: OK
[2026-01-14 22:10:13] 2026-01-14 22:09:41,385 | INFO     | cpuconsumptiontime: 29461 s
[2026-01-14 22:10:13] 2026-01-14 22:09:41,385 | INFO     | nevents: 400
[2026-01-14 22:10:13] 2026-01-14 22:09:41,385 | INFO     | neventsw: 0
[2026-01-14 22:10:13] 2026-01-14 22:09:41,386 | INFO     | pid: 518530
[2026-01-14 22:10:13] 2026-01-14 22:09:41,386 | INFO     | pgrp: 518530
[2026-01-14 22:10:13] 2026-01-14 22:09:41,386 | INFO     | corecount: 8
[2026-01-14 22:10:13] 2026-01-14 22:09:41,386 | INFO     | event service: False
[2026-01-14 22:10:13] 2026-01-14 22:09:41,387 | INFO     | sizes: {0: 2283787, 1: 2283986, 12: 2283986, 22: 2284014, 26: 2284304, 33: 2284332, 4302: 2310482, 4303: 2319494, 4304: 2319550, 4324: 2319744}
[2026-01-14 22:10:13] 2026-01-14 22:09:41,387 | INFO     | --------------------------------------------------
[2026-01-14 22:10:13] 2026-01-14 22:09:41,387 | INFO     | 
[2026-01-14 22:10:13] 2026-01-14 22:09:41,388 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2026-01-14 22:10:13] 2026-01-14 22:09:41,436 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,437 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,437 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,438 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,438 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,438 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,439 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,439 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,439 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,440 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,440 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,440 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,441 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,441 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,441 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,442 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-14 22:10:13] 2026-01-14 22:09:41,442 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,443 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 22:10:13] 2026-01-14 22:09:41,443 | INFO     | job 6969522019 has completed (purged errors)
[2026-01-14 22:10:13] 2026-01-14 22:09:41,444 | INFO     | overall cleanup function is called
[2026-01-14 22:10:13] 2026-01-14 22:09:42,456 | INFO     | --- collectZombieJob: --- 10, [518530]
[2026-01-14 22:10:13] 2026-01-14 22:09:42,456 | INFO     | zombie collector waiting for pid 518530
[2026-01-14 22:10:13] 2026-01-14 22:09:42,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 22:10:13] 2026-01-14 22:09:42,457 | INFO     | collected zombie processes
[2026-01-14 22:10:13] 2026-01-14 22:09:42,457 | INFO     | will attempt to kill all subprocesses of pid=518530
[2026-01-14 22:10:13] 2026-01-14 22:09:42,629 | INFO     | process IDs to be killed: [518530] (in reverse order)
[2026-01-14 22:10:13] 2026-01-14 22:09:42,719 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 22:10:13] 2026-01-14 22:09:42,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 22:10:13] 2026-01-14 22:09:42,725 | INFO     | did not find any defunct processes belonging to 518530
[2026-01-14 22:10:13] 2026-01-14 22:09:42,730 | INFO     | did not find any defunct processes belonging to 518530
[2026-01-14 22:10:13] 2026-01-14 22:09:42,731 | INFO     | ready for new job
[2026-01-14 22:10:13] 2026-01-14 22:09:42,731 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 22:10:13] 2026-01-14 22:09:42,735 | INFO     | ***************************************
[2026-01-14 22:10:13] 2026-01-14 22:09:42,735 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 22:10:13] 2026-01-14 22:09:42,735 | INFO     | ***************************************
[2026-01-14 22:10:13] 2026-01-14 22:09:42,736 | INFO     | 
[2026-01-14 22:10:13] 2026-01-14 22:09:42,737 | INFO     | pilot is running in a VM
[2026-01-14 22:10:13] 2026-01-14 22:09:42,737 | INFO     | architecture information:
[2026-01-14 22:10:13] 2026-01-14 22:09:42,738 | INFO     | executing command: cat /etc/os-release
[2026-01-14 22:10:13] 2026-01-14 22:09:42,770 | INFO     | cat /etc/os-release:
[2026-01-14 22:10:13] NAME="CentOS Linux"
[2026-01-14 22:10:13] VERSION="7 (Core)"
[2026-01-14 22:10:13] ID="centos"
[2026-01-14 22:10:13] ID_LIKE="rhel fedora"
[2026-01-14 22:10:13] VERSION_ID="7"
[2026-01-14 22:10:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 22:10:13] ANSI_COLOR="0;31"
[2026-01-14 22:10:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 22:10:13] HOME_URL="https://www.centos.org/"
[2026-01-14 22:10:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 22:10:13] 
[2026-01-14 22:10:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 22:10:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 22:10:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 22:10:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 22:10:13] 
[2026-01-14 22:10:13] 2026-01-14 22:09:42,770 | INFO     | ***************************************
[2026-01-14 22:10:13] 2026-01-14 22:09:43,274 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2026-01-14 22:10:13] 2026-01-14 22:09:43,332 | INFO     | sufficient remaining disk space (13154385920 B)
[2026-01-14 22:10:13] 2026-01-14 22:09:43,333 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 22:10:13] 2026-01-14 22:09:43,334 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 22:10:13] 2026-01-14 22:09:43,334 | INFO     | update_server=False
[2026-01-14 22:10:13] 2026-01-14 22:09:43,334 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 22:10:13] 2026-01-14 22:09:43,335 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 22:10:13] 2026-01-14 22:09:43,336 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 22:10:13] 2026-01-14 22:09:43,716 | INFO     | all payload control threads have been joined
[2026-01-14 22:10:13] 2026-01-14 22:09:43,753 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 22:10:13] 2026-01-14 22:09:43,754 | INFO     | aborting loop
[2026-01-14 22:10:13] 2026-01-14 22:09:43,932 | INFO     | all job control threads have been joined
[2026-01-14 22:10:13] 2026-01-14 22:09:44,095 | INFO     | all data control threads have been joined
[2026-01-14 22:10:13] 2026-01-14 22:09:44,340 | INFO     | [job] retrieve thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:44,342 | INFO     | [job] queue monitor thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:44,722 | INFO     | [payload] control thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:44,760 | INFO     | [job] job monitor thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:44,812 | INFO     | [job] validate thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:44,938 | INFO     | [job] control thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:45,071 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:45,099 | INFO     | [data] control thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:45,181 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 22:10:13] 2026-01-14 22:09:45,307 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:45,343 | INFO     | [data] copytool_out thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:45,378 | INFO     | [data] copytool_in thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:45,516 | INFO     | [payload] validate_post thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:45,571 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:45,815 | INFO     | [payload] failed_post thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:49,189 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:53,742 | INFO     | job.realtimelogging is not enabled
[2026-01-14 22:10:13] 2026-01-14 22:09:54,749 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 22:10:13] 2026-01-14 22:09:59,847 | INFO     | [monitor] cgroup control has ended
[2026-01-14 22:10:13] 2026-01-14 22:10:00,587 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139121453102912)>', '<ExcThread(monitor, started 139120785463040)>']
[2026-01-14 22:10:13] 2026-01-14 22:10:05,613 | INFO     | all workflow threads have been joined
[2026-01-14 22:10:13] 2026-01-14 22:10:05,621 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 22:10:13] 2026-01-14 22:10:05,622 | INFO     | traces error code: 0
[2026-01-14 22:10:13] 2026-01-14 22:10:05,623 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 22:10:13] 2026-01-14 22:10:12,664 | INFO     | PID=512109 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-14 22:10:13] 2026-01-14 22:10:12,664 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 22:10:13] 2026-01-14 22:10:12,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 22:10:13] 2026-01-14 22:10:12,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 22:10:13] 2026-01-14 22:10:12,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 22:10:13] 2026-01-14 22:10:12,665 | INFO     | [monitor] control thread has ended
[2026-01-14 22:10:13] 2026-01-14 22:10:12,847 [wrapper] ==== pilot stdout END ====
[2026-01-14 22:10:13] 2026-01-14 22:10:12,857 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 22:10:13] 2026-01-14 22:10:12,866 [wrapper] pilotpid: 512109
[2026-01-14 22:10:13] 2026-01-14 22:10:12,874 [wrapper] Pilot exit status: 0
[2026-01-14 22:10:13] 2026-01-14 22:10:12,908 [wrapper] pandaids: 6969522019
[2026-01-14 22:10:13] 2026-01-14 22:10:12,985 [wrapper] cleanup supervisor_pilot  527529 512110
[2026-01-14 22:10:13] 2026-01-14 22:10:12,993 [wrapper] Test setup, not cleaning
[2026-01-14 22:10:13] 2026-01-14 22:10:13,001 [wrapper] apfmon messages muted
[2026-01-14 22:10:13] 2026-01-14 22:10:13,010 [wrapper] ==== wrapper stdout END ====
[2026-01-14 22:10:13] 2026-01-14 22:10:13,019 [wrapper] ==== wrapper stderr END ====
[2026-01-14 22:10:13]  *** Error codes and diagnostics ***
[2026-01-14 22:10:13]     "exeErrorCode": 0,
[2026-01-14 22:10:13]     "exeErrorDiag": "",
[2026-01-14 22:10:13]     "pilotErrorCode": 0,
[2026-01-14 22:10:13]     "pilotErrorDiag": "",
[2026-01-14 22:10:13]  *** Listing of results directory ***
[2026-01-14 22:10:13] total 740092
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc    579449 Jan 14 15:23 pilot3.tar.gz
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc      5112 Jan 14 15:32 queuedata.json
[2026-01-14 22:10:13] -rwx------ 1 boinc boinc     36322 Jan 14 15:32 runpilot2-wrapper.sh
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc       100 Jan 14 20:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 22:10:13] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 20:56 run_atlas
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc       105 Jan 14 20:56 job.xml
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc      6317 Jan 14 20:56 init_data.xml
[2026-01-14 22:10:13] -rw-r--r-- 2 boinc boinc 596537545 Jan 14 20:56 EVNT.32794306._001102.pool.root.1
[2026-01-14 22:10:13] -rw-r--r-- 2 boinc boinc     15847 Jan 14 20:56 start_atlas.sh
[2026-01-14 22:10:13] drwxrwx--x 2 boinc boinc      4096 Jan 14 20:56 shared
[2026-01-14 22:10:13] -rw-r--r-- 2 boinc boinc    592404 Jan 14 20:56 input.tar.gz
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc         0 Jan 14 20:56 boinc_lockfile
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc      2508 Jan 14 20:56 pandaJob.out
[2026-01-14 22:10:13] -rw------- 1 boinc boinc    999596 Jan 14 20:56 agis_schedconf.cvmfs.json
[2026-01-14 22:10:13] -rw------- 1 boinc boinc   1516246 Jan 14 20:56 agis_ddmendpoints.agis.ALL.json
[2026-01-14 22:10:13] drwx------ 5 boinc boinc      4096 Jan 14 20:56 pilot3
[2026-01-14 22:10:13] -rw------- 1 boinc boinc 155444926 Jan 14 22:08 HITS.48215263._027530.pool.root.1
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc       530 Jan 14 22:08 boinc_task_state.xml
[2026-01-14 22:10:13] -rw------- 1 boinc boinc      1028 Jan 14 22:09 memory_monitor_summary.json
[2026-01-14 22:10:13] -rw------- 1 boinc boinc    321480 Jan 14 22:09 log.48215263._027530.job.log.tgz.1
[2026-01-14 22:10:13] -rw------- 1 boinc boinc        95 Jan 14 22:09 pilot_heartbeat.json
[2026-01-14 22:10:13] -rw------- 1 boinc boinc      7761 Jan 14 22:09 heartbeat.json
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc      8192 Jan 14 22:10 boinc_mmap_file
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc        27 Jan 14 22:10 wrapper_checkpoint.txt
[2026-01-14 22:10:13] -rw------- 1 boinc boinc       746 Jan 14 22:10 pilotlog.txt
[2026-01-14 22:10:13] -rw------- 1 boinc boinc    648396 Jan 14 22:10 log.48215263._027530.job.log.1
[2026-01-14 22:10:13] -rw------- 1 boinc boinc       357 Jan 14 22:10 output.list
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc       620 Jan 14 22:10 runtime_log
[2026-01-14 22:10:13] -rw------- 1 boinc boinc    993280 Jan 14 22:10 result.tar.gz
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc      8903 Jan 14 22:10 runtime_log.err
[2026-01-14 22:10:13] -rw------- 1 boinc boinc       646 Jan 14 22:10 4boMDmZ2H08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEclKDmXxlgmn.diag
[2026-01-14 22:10:13] -rw-r--r-- 1 boinc boinc     22523 Jan 14 22:10 stderr.txt
[2026-01-14 22:10:13] HITS file was successfully produced:
[2026-01-14 22:10:13] -rw------- 1 boinc boinc 155444926 Jan 14 22:08 shared/HITS.pool.root.1
[2026-01-14 22:10:13]  *** Contents of shared directory: ***
[2026-01-14 22:10:13] total 735940
[2026-01-14 22:10:13] -rw-r--r-- 2 boinc boinc 596537545 Jan 14 20:56 ATLAS.root_0
[2026-01-14 22:10:13] -rw-r--r-- 2 boinc boinc     15847 Jan 14 20:56 start_atlas.sh
[2026-01-14 22:10:13] -rw-r--r-- 2 boinc boinc    592404 Jan 14 20:56 input.tar.gz
[2026-01-14 22:10:13] -rw------- 1 boinc boinc 155444926 Jan 14 22:08 HITS.pool.root.1
[2026-01-14 22:10:13] -rw------- 1 boinc boinc    993280 Jan 14 22:10 result.tar.gz
22:10:15 (508394): run_atlas exited; CPU time 29463.161619
22:10:15 (508394): called boinc_finish(0)

</stderr_txt>
]]>

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