Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:01 (2317402): wrapper (7.7.26015): starting
00:04:01 (2317402): wrapper: running run_atlas (--nthreads 9)
[2026-01-15 00:04:01] Arguments: --nthreads 9
[2026-01-15 00:04:01] Threads: 9
[2026-01-15 00:04:01] Checking for CVMFS
[2026-01-15 00:04:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 00:04:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 00:04:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 00:04:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 00:04:05] 2.13.3.0 13071 38273 317112 155156 0 264 32109665 32935936 30032 16776704 0 40223977 99.732 38540982 14569 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-15 00:04:05] CVMFS is ok
[2026-01-15 00:04:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-15 00:04:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-15 00:04:05] Further information can be found at the LHC@home message board.
[2026-01-15 00:04:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 00:04:05] Checking for apptainer binary...
[2026-01-15 00:04:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 00:04:05] Running /usr/bin/apptainer --version
[2026-01-15 00:04:05] apptainer version 1.4.5-2.el9
[2026-01-15 00:04:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 00:04:07] c6-12-25-1.aglt2.org
[2026-01-15 00:04:07] apptainer works
[2026-01-15 00:04:07] Set ATHENA_PROC_NUMBER=9
[2026-01-15 00:04:07] Set ATHENA_CORE_NUMBER=9
[2026-01-15 00:04:07] Starting ATLAS job with PandaID=6969519149
[2026-01-15 00:04:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 20:17:04]  *** The last 200 lines of the pilot log: ***
[2026-01-15 20:17:05] 2026-01-16 01:16:00,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 20:17:05] 2026-01-16 01:16:02,917 | INFO     | monitor loop #1915: job 0:6969519149 is in state 'finished'
[2026-01-15 20:17:05] 2026-01-16 01:16:02,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 20:17:05] 2026-01-16 01:16:05,650 | INFO     | monitor loop #1916: job 0:6969519149 is in state 'finished'
[2026-01-15 20:17:05] 2026-01-16 01:16:05,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 20:17:05] 2026-01-16 01:16:05,825 | INFO     | PID=2326621 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 20:17:05] 2026-01-16 01:16:05,825 | INFO     | .. there are 40 such processes running
[2026-01-15 20:17:05] 2026-01-16 01:16:06,853 | INFO     | time since job start (72598s) is within the limit (349056.0s)
[2026-01-15 20:17:05] 2026-01-16 01:16:06,853 | INFO     | 72612s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-15 20:17:05] 2026-01-16 01:16:08,170 | INFO     | monitor loop #1917: job 0:6969519149 is in state 'finished'
[2026-01-15 20:17:05] 2026-01-16 01:16:08,170 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 20:17:05] 2026-01-16 01:16:08,887 | INFO     | time since job start (72600s) is within the limit (349056.0s)
[2026-01-15 20:17:05] 2026-01-16 01:16:10,676 | INFO     | monitor loop #1918: job 0:6969519149 is in state 'finished'
[2026-01-15 20:17:05] 2026-01-16 01:16:10,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 20:17:05] 2026-01-16 01:16:10,863 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-15 20:17:05] 2026-01-16 01:16:10,896 | INFO     | time since job start (72602s) is within the limit (349056.0s)
[2026-01-15 20:17:05] 2026-01-16 01:16:11,126 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.9966666666668
[2026-01-15 20:17:05] 2026-01-16 01:16:11,465 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6969519149/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 20:17:05] 2026-01-16 01:16:11,479 | INFO     | extracted standard info from prmon json
[2026-01-15 20:17:05] 2026-01-16 01:16:11,480 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 20:17:05] 2026-01-16 01:16:11,480 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 20:17:05] 2026-01-16 01:16:11,481 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 20:17:05] 2026-01-16 01:16:11,481 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 20:17:05] 2026-01-16 01:16:11,652 | INFO     | fitting pss+swap vs Time
[2026-01-15 20:17:05] 2026-01-16 01:16:11,691 | INFO     | sum of square deviations: 515994919597.7427
[2026-01-15 20:17:05] 2026-01-16 01:16:12,050 | INFO     | sum of deviations: 1287467732371.0344
[2026-01-15 20:17:05] 2026-01-16 01:16:12,069 | INFO     | mean x: 1768489935.120675
[2026-01-15 20:17:05] 2026-01-16 01:16:12,070 | INFO     | mean y: 2538723.9578059074
[2026-01-15 20:17:05] 2026-01-16 01:16:12,070 | INFO     | intersect: -4410050702.82533
[2026-01-15 20:17:05] 2026-01-16 01:16:12,085 | INFO     | chi2: 17.16157226702551
[2026-01-15 20:17:05] 2026-01-16 01:16:12,102 | INFO     | sum of square deviations: 509492094830.1121
[2026-01-15 20:17:05] 2026-01-16 01:16:12,321 | INFO     | sum of deviations: 1686466751360.8142
[2026-01-15 20:17:05] 2026-01-16 01:16:12,322 | INFO     | mean x: 1768489782.633051
[2026-01-15 20:17:05] 2026-01-16 01:16:12,322 | INFO     | mean y: 2548080.650847458
[2026-01-15 20:17:05] 2026-01-16 01:16:12,322 | INFO     | intersect: -5851319425.431764
[2026-01-15 20:17:05] 2026-01-16 01:16:12,326 | INFO     | chi2: 13.299703937372517
[2026-01-15 20:17:05] 2026-01-16 01:16:12,327 | INFO     | current chi2=13.299703937372517 (change=22.50299838245731 %)
[2026-01-15 20:17:05] 2026-01-16 01:16:12,327 | INFO     | right removable region: 1179
[2026-01-15 20:17:05] 2026-01-16 01:16:12,331 | INFO     | sum of square deviations: 509490055788.376
[2026-01-15 20:17:05] 2026-01-16 01:16:12,510 | INFO     | sum of deviations: 871617571020.0068
[2026-01-15 20:17:05] 2026-01-16 01:16:12,511 | INFO     | mean x: 1768490087.6322033
[2026-01-15 20:17:05] 2026-01-16 01:16:12,511 | INFO     | mean y: 2548472.131355932
[2026-01-15 20:17:05] 2026-01-16 01:16:12,512 | INFO     | intersect: -3022921833.0147023
[2026-01-15 20:17:05] 2026-01-16 01:16:12,516 | INFO     | chi2: 12.937066299391226
[2026-01-15 20:17:05] 2026-01-16 01:16:12,516 | INFO     | current chi2=12.937066299391226 (change=24.616077722385082 %)
[2026-01-15 20:17:05] 2026-01-16 01:16:12,516 | INFO     | left removable region: 10
[2026-01-15 20:17:05] 2026-01-16 01:16:12,520 | INFO     | sum of square deviations: 495374611719.7234
[2026-01-15 20:17:05] 2026-01-16 01:16:12,798 | INFO     | sum of deviations: 1020206634809.3448
[2026-01-15 20:17:05] 2026-01-16 01:16:12,799 | INFO     | mean x: 1768490057.1582549
[2026-01-15 20:17:05] 2026-01-16 01:16:12,799 | INFO     | mean y: 2567738.3062446536
[2026-01-15 20:17:05] 2026-01-16 01:16:12,799 | INFO     | intersect: -3639575494.7587886
[2026-01-15 20:17:05] 2026-01-16 01:16:12,815 | INFO     | chi2: 5.626570175532762
[2026-01-15 20:17:05] 2026-01-16 01:16:12,816 | INFO     | current memory leak: 2.06 B/s (using 1169 data points, chi2=5.63)
[2026-01-15 20:17:05] 2026-01-16 01:16:12,831 | INFO     | could have reported an average CPU frequency of 999 MHz (42 samples)
[2026-01-15 20:17:05] 2026-01-16 01:16:12,832 | INFO     | ..............................
[2026-01-15 20:17:05] 2026-01-16 01:16:12,832 | INFO     | . Timing measurements:
[2026-01-15 20:17:05] 2026-01-16 01:16:12,832 | INFO     | . get job = 0 s
[2026-01-15 20:17:05] 2026-01-16 01:16:12,832 | INFO     | . initial setup = 13 s
[2026-01-15 20:17:05] 2026-01-16 01:16:12,841 | INFO     | . payload setup = 76 s
[2026-01-15 20:17:05] 2026-01-16 01:16:12,842 | INFO     | . stage-in = 1 s
[2026-01-15 20:17:05] 2026-01-16 01:16:12,842 | INFO     | . payload execution = 72303 s
[2026-01-15 20:17:05] 2026-01-16 01:16:12,842 | INFO     | . stage-out = 31 s
[2026-01-15 20:17:05] 2026-01-16 01:16:12,842 | INFO     | . log creation = 3 s
[2026-01-15 20:17:05] 2026-01-16 01:16:12,842 | INFO     | ..............................
[2026-01-15 20:17:05] 2026-01-16 01:16:12,931 | INFO     | time since job start (72604s) is within the limit (349056.0s)
[2026-01-15 20:17:05] 2026-01-16 01:16:14,461 | INFO     | 
[2026-01-15 20:17:05] 2026-01-16 01:16:14,461 | INFO     | job summary report
[2026-01-15 20:17:05] 2026-01-16 01:16:14,461 | INFO     | --------------------------------------------------
[2026-01-15 20:17:05] 2026-01-16 01:16:14,462 | INFO     | PanDA job id: 6969519149
[2026-01-15 20:17:05] 2026-01-16 01:16:14,462 | INFO     | task id: 48215263
[2026-01-15 20:17:05] 2026-01-16 01:16:14,462 | INFO     | errors: (none)
[2026-01-15 20:17:05] 2026-01-16 01:16:14,462 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 20:17:05] 2026-01-16 01:16:14,463 | INFO     | pilot state: finished 
[2026-01-15 20:17:05] 2026-01-16 01:16:14,463 | INFO     | transexitcode: 0
[2026-01-15 20:17:05] 2026-01-16 01:16:14,463 | INFO     | exeerrorcode: 0
[2026-01-15 20:17:05] 2026-01-16 01:16:14,463 | INFO     | exeerrordiag: 
[2026-01-15 20:17:05] 2026-01-16 01:16:14,463 | INFO     | exitcode: 0
[2026-01-15 20:17:05] 2026-01-16 01:16:14,463 | INFO     | exitmsg: OK
[2026-01-15 20:17:05] 2026-01-16 01:16:14,464 | INFO     | cpuconsumptiontime: 74870 s
[2026-01-15 20:17:05] 2026-01-16 01:16:14,464 | INFO     | nevents: 400
[2026-01-15 20:17:05] 2026-01-16 01:16:14,464 | INFO     | neventsw: 0
[2026-01-15 20:17:05] 2026-01-16 01:16:14,464 | INFO     | pid: 2369427
[2026-01-15 20:17:05] 2026-01-16 01:16:14,464 | INFO     | pgrp: 2369427
[2026-01-15 20:17:05] 2026-01-16 01:16:14,477 | INFO     | corecount: 9
[2026-01-15 20:17:05] 2026-01-16 01:16:14,477 | INFO     | event service: False
[2026-01-15 20:17:05] 2026-01-16 01:16:14,477 | INFO     | sizes: {0: 2283123, 2: 2283724, 3: 2283808, 4: 2283864, 5: 2284063, 6: 2284091, 17: 2284247, 30: 2284275, 42: 2284303, 54: 2284359, 62: 2284649, 66: 2284957, 72392
[2026-01-15 20:17:05] 2026-01-16 01:16:14,478 | INFO     | --------------------------------------------------
[2026-01-15 20:17:05] 2026-01-16 01:16:14,478 | INFO     | 
[2026-01-15 20:17:05] 2026-01-16 01:16:14,478 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-15 20:17:05] 2026-01-16 01:16:14,592 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,593 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,593 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,593 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,594 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,594 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,594 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,614 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,614 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,616 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 20:17:05] 2026-01-16 01:16:14,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,617 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 20:17:05] 2026-01-16 01:16:14,617 | INFO     | job 6969519149 has completed (purged errors)
[2026-01-15 20:17:05] 2026-01-16 01:16:14,622 | INFO     | overall cleanup function is called
[2026-01-15 20:17:05] 2026-01-16 01:16:15,648 | INFO     | --- collectZombieJob: --- 10, [2369427]
[2026-01-15 20:17:05] 2026-01-16 01:16:15,648 | INFO     | zombie collector waiting for pid 2369427
[2026-01-15 20:17:05] 2026-01-16 01:16:15,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 20:17:05] 2026-01-16 01:16:15,653 | INFO     | collected zombie processes
[2026-01-15 20:17:05] 2026-01-16 01:16:15,653 | INFO     | will attempt to kill all subprocesses of pid=2369427
[2026-01-15 20:17:05] 2026-01-16 01:16:24,724 | INFO     | process IDs to be killed: [2369427] (in reverse order)
[2026-01-15 20:17:05] 2026-01-16 01:16:30,551 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 20:17:05] 2026-01-16 01:16:30,552 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 20:17:05] 2026-01-16 01:16:30,982 | INFO     | did not find any defunct processes belonging to 2369427
[2026-01-15 20:17:05] 2026-01-16 01:16:31,294 | INFO     | did not find any defunct processes belonging to 2369427
[2026-01-15 20:17:05] 2026-01-16 01:16:31,295 | INFO     | ready for new job
[2026-01-15 20:17:05] 2026-01-16 01:16:31,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 20:17:05] 2026-01-16 01:16:31,432 | INFO     | ***************************************
[2026-01-15 20:17:05] 2026-01-16 01:16:31,433 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 20:17:05] 2026-01-16 01:16:31,433 | INFO     | ***************************************
[2026-01-15 20:17:05] 2026-01-16 01:16:31,433 | INFO     | 
[2026-01-15 20:17:05] 2026-01-16 01:16:31,531 | INFO     | architecture information:
[2026-01-15 20:17:05] 2026-01-16 01:16:31,581 | INFO     | executing command: cat /etc/os-release
[2026-01-15 20:17:05] 2026-01-16 01:16:31,901 | INFO     | cat /etc/os-release:
[2026-01-15 20:17:05] NAME="CentOS Linux"
[2026-01-15 20:17:05] VERSION="7 (Core)"
[2026-01-15 20:17:05] ID="centos"
[2026-01-15 20:17:05] ID_LIKE="rhel fedora"
[2026-01-15 20:17:05] VERSION_ID="7"
[2026-01-15 20:17:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 20:17:05] ANSI_COLOR="0;31"
[2026-01-15 20:17:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 20:17:05] HOME_URL="https://www.centos.org/"
[2026-01-15 20:17:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 20:17:05] 
[2026-01-15 20:17:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 20:17:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 20:17:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 20:17:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 20:17:05] 
[2026-01-15 20:17:05] 2026-01-16 01:16:31,902 | INFO     | ***************************************
[2026-01-15 20:17:05] 2026-01-16 01:16:32,406 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-15 20:17:05] 2026-01-16 01:16:32,533 | INFO     | sufficient remaining disk space (63078137856 B)
[2026-01-15 20:17:05] 2026-01-16 01:16:32,534 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 20:17:05] 2026-01-16 01:16:32,534 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 20:17:05] 2026-01-16 01:16:32,535 | INFO     | update_server=False
[2026-01-15 20:17:05] 2026-01-16 01:16:32,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 20:17:05] 2026-01-16 01:16:32,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 20:17:05] 2026-01-16 01:16:32,540 | INFO     | aborting loop
[2026-01-15 20:17:05] 2026-01-16 01:16:32,543 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 20:17:05] 2026-01-16 01:16:32,590 | INFO     | all data control threads have been joined
[2026-01-15 20:17:05] 2026-01-16 01:16:33,419 | INFO     | all payload control threads have been joined
[2026-01-15 20:17:05] 2026-01-16 01:16:33,516 | INFO     | all job control threads have been joined
[2026-01-15 20:17:05] 2026-01-16 01:16:33,541 | INFO     | [job] retrieve thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:33,583 | INFO     | [job] job monitor thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:33,611 | INFO     | [data] control thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,094 | INFO     | [payload] failed_post thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,425 | INFO     | [payload] control thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,518 | INFO     | [data] copytool_in thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,522 | INFO     | [job] control thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,598 | INFO     | [data] copytool_out thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,762 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,768 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,774 | INFO     | [job] validate thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,778 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,873 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:34,912 | INFO     | [payload] validate_post thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:35,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 20:17:05] 2026-01-16 01:16:35,630 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 20:17:05] 2026-01-16 01:16:36,404 | INFO     | [job] queue monitor thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:39,639 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 20:17:05] 2026-01-16 01:16:51,779 | INFO     | [monitor] cgroup control has ended
[2026-01-15 20:17:05] 2026-01-16 01:16:53,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139626316977984)>', '<ExcThread(monitor, started 139625930667776)>']
[2026-01-15 20:17:05] 2026-01-16 01:16:58,660 | INFO     | all workflow threads have been joined
[2026-01-15 20:17:05] 2026-01-16 01:16:58,660 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 20:17:05] 2026-01-16 01:16:58,661 | INFO     | traces error code: 0
[2026-01-15 20:17:05] 2026-01-16 01:16:58,662 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 20:17:05] 2026-01-16 01:17:00,657 | INFO     | PID=2326621 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-15 20:17:05] 2026-01-16 01:17:00,658 | INFO     | .. there are 39 such processes running
[2026-01-15 20:17:05] 2026-01-16 01:17:00,659 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 20:17:05] 2026-01-16 01:17:00,659 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 20:17:05] 2026-01-16 01:17:00,659 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 20:17:05] 2026-01-16 01:17:00,679 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 20:17:05] 2026-01-16 01:17:00,679 | INFO     | [monitor] control thread has ended
[2026-01-15 20:17:05] 2026-01-16 01:17:02,414 [wrapper] ==== pilot stdout END ====
[2026-01-15 20:17:05] 2026-01-16 01:17:02,462 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 20:17:05] 2026-01-16 01:17:02,506 [wrapper] pilotpid: 2326621
[2026-01-15 20:17:05] 2026-01-16 01:17:02,551 [wrapper] Pilot exit status: 0
[2026-01-15 20:17:05] 2026-01-16 01:17:02,694 [wrapper] pandaids: 6969519149
[2026-01-15 20:17:05] 2026-01-16 01:17:03,816 [wrapper] cleanup supervisor_pilot 2238956 2326623
[2026-01-15 20:17:05] 2026-01-16 01:17:03,889 [wrapper] Test setup, not cleaning
[2026-01-15 20:17:05] 2026-01-16 01:17:03,922 [wrapper] apfmon messages muted
[2026-01-15 20:17:05] 2026-01-16 01:17:03,981 [wrapper] ==== wrapper stdout END ====
[2026-01-15 20:17:05] 2026-01-16 01:17:04,027 [wrapper] ==== wrapper stderr END ====
[2026-01-15 20:17:05]  *** Error codes and diagnostics ***
[2026-01-15 20:17:05]     "exeErrorCode": 0,
[2026-01-15 20:17:05]     "exeErrorDiag": "",
[2026-01-15 20:17:05]     "pilotErrorCode": 0,
[2026-01-15 20:17:05]     "pilotErrorDiag": "",
[2026-01-15 20:17:05]  *** Listing of results directory ***
[2026-01-15 20:17:05] total 750980
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas    579449 Jan 14 10:23 pilot3.tar.gz
[2026-01-15 20:17:05] -rwx------. 1 boincer umatlas     36322 Jan 14 10:29 runpilot2-wrapper.sh
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas      5112 Jan 14 10:32 queuedata.json
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas       100 Jan 15 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 20:17:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 15 00:03 run_atlas
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas       105 Jan 15 00:03 job.xml
[2026-01-15 20:17:05] -rw-r--r--. 2 boincer umatlas 598604356 Jan 15 00:04 EVNT.32794306._001068.pool.root.1
[2026-01-15 20:17:05] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 00:04 start_atlas.sh
[2026-01-15 20:17:05] drwxrwx--x. 2 boincer umatlas      4096 Jan 15 00:04 shared
[2026-01-15 20:17:05] -rw-r--r--. 2 boincer umatlas    592402 Jan 15 00:04 input.tar.gz
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas         0 Jan 15 00:04 boinc_lockfile
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas      2508 Jan 15 00:04 pandaJob.out
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas        57 Jan 15 00:04 setup.sh.local
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas    999472 Jan 15 00:05 agis_schedconf.cvmfs.json
[2026-01-15 20:17:05] drwx------. 5 boincer umatlas      4096 Jan 15 00:06 pilot3
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas 153751231 Jan 15 20:05 HITS.48215263._026688.pool.root.1
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas       532 Jan 15 20:05 boinc_task_state.xml
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas      6857 Jan 15 20:13 init_data.xml
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas      1057 Jan 15 20:14 memory_monitor_summary.json
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas   1516246 Jan 15 20:14 agis_ddmendpoints.agis.ALL.json
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas    971150 Jan 15 20:15 log.48215263._026688.job.log.tgz.1
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas        96 Jan 15 20:16 pilot_heartbeat.json
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas      7836 Jan 15 20:16 heartbeat.json
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas       823 Jan 15 20:17 pilotlog.txt
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas      8192 Jan 15 20:17 boinc_mmap_file
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas        28 Jan 15 20:17 wrapper_checkpoint.txt
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas   5389799 Jan 15 20:17 log.48215263._026688.job.log.1
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas       357 Jan 15 20:17 output.list
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas       620 Jan 15 20:17 runtime_log
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas   6379520 Jan 15 20:17 result.tar.gz
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas       661 Jan 15 20:17 SrALDmrzH08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpXlKDmAFt3Zm.diag
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas      9353 Jan 15 20:17 runtime_log.err
[2026-01-15 20:17:05] -rw-r--r--. 1 boincer umatlas     21771 Jan 15 20:17 stderr.txt
[2026-01-15 20:17:05] HITS file was successfully produced:
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas 153751231 Jan 15 20:05 shared/HITS.pool.root.1
[2026-01-15 20:17:05]  *** Contents of shared directory: ***
[2026-01-15 20:17:05] total 741560
[2026-01-15 20:17:05] -rw-r--r--. 2 boincer umatlas 598604356 Jan 15 00:04 ATLAS.root_0
[2026-01-15 20:17:05] -rw-r--r--. 2 boincer umatlas     15847 Jan 15 00:04 start_atlas.sh
[2026-01-15 20:17:05] -rw-r--r--. 2 boincer umatlas    592402 Jan 15 00:04 input.tar.gz
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas 153751231 Jan 15 20:05 HITS.pool.root.1
[2026-01-15 20:17:05] -rw-------. 1 boincer umatlas   6379520 Jan 15 20:17 result.tar.gz
20:17:06 (2317402): run_atlas exited; CPU time 80574.099589
20:17:06 (2317402): called boinc_finish(0)

</stderr_txt>
]]>

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