Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:55:33 (622172): wrapper (7.7.26015): starting
10:55:33 (622172): wrapper: running run_atlas (--nthreads 3)
[2026-01-15 10:55:33] Arguments: --nthreads 3
[2026-01-15 10:55:33] Threads: 3
[2026-01-15 10:55:33] Checking for CVMFS
[2026-01-15 10:55:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-15 10:55:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-15 10:55:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-15 10:55:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-15 10:55:34] 2.13.3.0 110733 1630 90844 155151 0 57 15037790 15728640 0 130560 0 1618798 99.991 64574 17 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-15 10:55:34] CVMFS is ok
[2026-01-15 10:55:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-15 10:55:34] Checking for apptainer binary...
[2026-01-15 10:55:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-15 10:55:34] Running /usr/bin/apptainer --version
[2026-01-15 10:55:34] apptainer version 1.4.5-2.el9
[2026-01-15 10:55:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-15 10:55:34] testio003
[2026-01-15 10:55:34] apptainer works
[2026-01-15 10:55:34] Set ATHENA_PROC_NUMBER=3
[2026-01-15 10:55:34] Set ATHENA_CORE_NUMBER=3
[2026-01-15 10:55:34] Starting ATLAS job with PandaID=6969548354
[2026-01-15 10:55:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-15 12:11:20]  *** The last 200 lines of the pilot log: ***
[2026-01-15 12:11:20] 2026-01-15 03:10:22,677 | INFO     | monitor loop #349: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:22,677 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:22,898 | INFO     | time since job start (4478s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:24,903 | INFO     | time since job start (4480s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:25,180 | INFO     | monitor loop #350: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:25,180 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:26,909 | INFO     | time since job start (4482s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:27,684 | INFO     | monitor loop #351: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:27,684 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:28,914 | INFO     | time since job start (4484s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:30,187 | INFO     | monitor loop #352: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:30,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:30,920 | INFO     | time since job start (4486s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:32,009 | INFO     | PID=625843 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 12:11:20] 2026-01-15 03:10:32,691 | INFO     | monitor loop #353: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:32,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:33,009 | INFO     | time since job start (4489s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:35,015 | INFO     | time since job start (4491s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:35,193 | INFO     | monitor loop #354: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:35,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:37,020 | INFO     | time since job start (4493s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:37,697 | INFO     | monitor loop #355: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:37,697 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:38,181 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-15 12:11:20] 2026-01-15 03:10:39,026 | INFO     | time since job start (4495s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:40,200 | INFO     | monitor loop #356: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:40,201 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:41,031 | INFO     | time since job start (4497s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:42,704 | INFO     | monitor loop #357: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:42,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:43,036 | INFO     | time since job start (4499s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:45,042 | INFO     | time since job start (4501s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:45,207 | INFO     | monitor loop #358: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:45,208 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:47,048 | INFO     | time since job start (4503s) is within the limit (349056.0s)
[2026-01-15 12:11:20] 2026-01-15 03:10:47,711 | INFO     | monitor loop #359: job 0:6969548354 is in state 'finished'
[2026-01-15 12:11:20] 2026-01-15 03:10:47,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-15 12:11:20] 2026-01-15 03:10:48,553 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-15 12:11:20] 2026-01-15 03:10:48,553 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3646.8514999999998
[2026-01-15 12:11:20] 2026-01-15 03:10:48,554 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6969548354/memory_monitor_summary.json (trf name=prmon)
[2026-01-15 12:11:20] 2026-01-15 03:10:48,554 | INFO     | extracted standard info from prmon json
[2026-01-15 12:11:20] 2026-01-15 03:10:48,554 | INFO     | extracted standard memory fields from prmon json
[2026-01-15 12:11:20] 2026-01-15 03:10:48,554 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-15 12:11:20] 2026-01-15 03:10:48,555 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-15 12:11:20] 2026-01-15 03:10:48,555 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | fitting pss+swap vs Time
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | sum of square deviations: 89127252.5
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | sum of deviations: -8772862101.500002
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | mean x: 1768444451.5
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | mean y: 2472221.6818181816
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | intersect: 174071781798.7083
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | chi2: 0.13748675991904297
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | current memory leak: -98.43 B/s (using 66 data points, chi2=0.14)
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | could have reported an average CPU frequency of 3632 MHz (6 samples)
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | ..............................
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | . Timing measurements:
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | . get job = 0 s
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | . initial setup = 6 s
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | . payload setup = 3 s
[2026-01-15 12:11:20] 2026-01-15 03:10:48,556 | INFO     | . stage-in = 0 s
[2026-01-15 12:11:20] 2026-01-15 03:10:48,557 | INFO     | . payload execution = 4410 s
[2026-01-15 12:11:20] 2026-01-15 03:10:48,557 | INFO     | . stage-out = 0 s
[2026-01-15 12:11:20] 2026-01-15 03:10:48,557 | INFO     | . log creation = 0 s
[2026-01-15 12:11:20] 2026-01-15 03:10:48,557 | INFO     | ..............................
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | 
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | job summary report
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | --------------------------------------------------
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | PanDA job id: 6969548354
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | task id: 48215263
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | errors: (none)
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | pilot state: finished 
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | transexitcode: 0
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | exeerrorcode: 0
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | exeerrordiag: 
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | exitcode: 0
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | exitmsg: OK
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | cpuconsumptiontime: 12167 s
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | nevents: 400
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | neventsw: 0
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | pid: 632388
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | pgrp: 632388
[2026-01-15 12:11:20] 2026-01-15 03:10:48,593 | INFO     | corecount: 3
[2026-01-15 12:11:20] 2026-01-15 03:10:48,594 | INFO     | event service: False
[2026-01-15 12:11:20] 2026-01-15 03:10:48,594 | INFO     | sizes: {0: 2283951, 2: 2284213, 11: 2284241, 4416: 2310380, 4417: 2319434, 4491: 2319572}
[2026-01-15 12:11:20] 2026-01-15 03:10:48,594 | INFO     | --------------------------------------------------
[2026-01-15 12:11:20] 2026-01-15 03:10:48,594 | INFO     | 
[2026-01-15 12:11:20] 2026-01-15 03:10:48,594 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-01-15 12:11:20] 2026-01-15 03:10:48,602 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,602 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,602 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,602 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,602 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | job 6969548354 has completed (purged errors)
[2026-01-15 12:11:20] 2026-01-15 03:10:48,603 | INFO     | overall cleanup function is called
[2026-01-15 12:11:20] 2026-01-15 03:10:49,609 | INFO     | --- collectZombieJob: --- 10, [632388]
[2026-01-15 12:11:20] 2026-01-15 03:10:49,609 | INFO     | zombie collector waiting for pid 632388
[2026-01-15 12:11:20] 2026-01-15 03:10:49,609 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-15 12:11:20] 2026-01-15 03:10:49,609 | INFO     | collected zombie processes
[2026-01-15 12:11:20] 2026-01-15 03:10:49,610 | INFO     | will attempt to kill all subprocesses of pid=632388
[2026-01-15 12:11:20] 2026-01-15 03:10:49,641 | INFO     | process IDs to be killed: [632388] (in reverse order)
[2026-01-15 12:11:20] 2026-01-15 03:10:49,660 | WARNING  | found no corresponding commands to process id(s)
[2026-01-15 12:11:20] 2026-01-15 03:10:49,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-15 12:11:20] 2026-01-15 03:10:49,661 | INFO     | did not find any defunct processes belonging to 632388
[2026-01-15 12:11:20] 2026-01-15 03:10:49,662 | INFO     | did not find any defunct processes belonging to 632388
[2026-01-15 12:11:20] 2026-01-15 03:10:49,662 | INFO     | ready for new job
[2026-01-15 12:11:20] 2026-01-15 03:10:49,662 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-15 12:11:20] 2026-01-15 03:10:49,663 | INFO     | ***************************************
[2026-01-15 12:11:20] 2026-01-15 03:10:49,663 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-15 12:11:20] 2026-01-15 03:10:49,663 | INFO     | ***************************************
[2026-01-15 12:11:20] 2026-01-15 03:10:49,663 | INFO     | 
[2026-01-15 12:11:20] 2026-01-15 03:10:49,663 | INFO     | architecture information:
[2026-01-15 12:11:20] 2026-01-15 03:10:49,664 | INFO     | executing command: cat /etc/os-release
[2026-01-15 12:11:20] 2026-01-15 03:10:49,670 | INFO     | cat /etc/os-release:
[2026-01-15 12:11:20] NAME="CentOS Linux"
[2026-01-15 12:11:20] VERSION="7 (Core)"
[2026-01-15 12:11:20] ID="centos"
[2026-01-15 12:11:20] ID_LIKE="rhel fedora"
[2026-01-15 12:11:20] VERSION_ID="7"
[2026-01-15 12:11:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-15 12:11:20] ANSI_COLOR="0;31"
[2026-01-15 12:11:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-15 12:11:20] HOME_URL="https://www.centos.org/"
[2026-01-15 12:11:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-15 12:11:20] 
[2026-01-15 12:11:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-15 12:11:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-15 12:11:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-15 12:11:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-15 12:11:20] 
[2026-01-15 12:11:20] 2026-01-15 03:10:49,671 | INFO     | ***************************************
[2026-01-15 12:11:20] 2026-01-15 03:10:50,174 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-01-15 12:11:20] 2026-01-15 03:10:50,181 | INFO     | sufficient remaining disk space (46853521408 B)
[2026-01-15 12:11:20] 2026-01-15 03:10:50,181 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-15 12:11:20] 2026-01-15 03:10:50,182 | INFO     | current server update state: UPDATING_FINAL
[2026-01-15 12:11:20] 2026-01-15 03:10:50,182 | INFO     | update_server=False
[2026-01-15 12:11:20] 2026-01-15 03:10:50,182 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-15 12:11:20] 2026-01-15 03:10:50,182 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:11:20] 2026-01-15 03:10:50,182 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-15 12:11:20] 2026-01-15 03:10:50,214 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-15 12:11:20] 2026-01-15 03:10:50,214 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-15 12:11:20] 2026-01-15 03:10:50,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-15 12:11:20] 2026-01-15 03:10:50,214 | INFO     | will abort loop
[2026-01-15 12:11:20] 2026-01-15 03:10:50,418 | INFO     | all payload control threads have been joined
[2026-01-15 12:11:20] 2026-01-15 03:10:51,122 | INFO     | [monitor] cgroup control has ended
[2026-01-15 12:11:20] 2026-01-15 03:10:51,159 | INFO     | all job control threads have been joined
[2026-01-15 12:11:20] 2026-01-15 03:10:51,187 | INFO     | [job] retrieve thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:51,187 | INFO     | [job] queue monitor thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:51,219 | INFO     | [job] job monitor thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:51,251 | INFO     | [payload] failed_post thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:51,268 | INFO     | [job] create_data_payload thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:51,273 | INFO     | all data control threads have been joined
[2026-01-15 12:11:20] 2026-01-15 03:10:51,275 | INFO     | [job] validate thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:51,285 | INFO     | [data] copytool_in thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:51,419 | INFO     | [payload] control thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:51,745 | INFO     | [payload] execute_payloads thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:51,949 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:52,091 | INFO     | [payload] validate_post thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:52,164 | INFO     | [job] control thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:52,188 | INFO     | [data] copytool_out thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:52,274 | INFO     | [data] control thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:52,276 | INFO     | [payload] validate_pre thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:52,596 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-15 12:11:20] 2026-01-15 03:10:56,602 | INFO     | [data] queue_monitor thread has finished
[2026-01-15 12:11:20] 2026-01-15 03:10:58,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314693343040)>', '<ExcThread(monitor, started 140314341787392)>']
[2026-01-15 12:11:20] 2026-01-15 03:11:03,655 | INFO     | all workflow threads have been joined
[2026-01-15 12:11:20] 2026-01-15 03:11:03,655 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-15 12:11:20] 2026-01-15 03:11:03,656 | INFO     | traces error code: 0
[2026-01-15 12:11:20] 2026-01-15 03:11:03,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-15 12:11:20] 2026-01-15 03:11:20,171 | INFO     | PID=625843 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-15 12:11:20] 2026-01-15 03:11:20,172 | INFO     | found 0 job(s) in 20 queues
[2026-01-15 12:11:20] 2026-01-15 03:11:20,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-15 12:11:20] 2026-01-15 03:11:20,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-15 12:11:20] 2026-01-15 03:11:20,172 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-15 12:11:20] 2026-01-15 03:11:20,172 | INFO     | [monitor] control thread has ended
[2026-01-15 12:11:20] 2026-01-15 03:11:20,229 [wrapper] ==== pilot stdout END ====
[2026-01-15 12:11:20] 2026-01-15 03:11:20,231 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-15 12:11:20] 2026-01-15 03:11:20,233 [wrapper] pilotpid: 625843
[2026-01-15 12:11:20] 2026-01-15 03:11:20,234 [wrapper] Pilot exit status: 0
[2026-01-15 12:11:20] 2026-01-15 03:11:20,239 [wrapper] pandaids: 6969548354
[2026-01-15 12:11:20] 2026-01-15 03:11:20,250 [wrapper] cleanup supervisor_pilot  645860 625844
[2026-01-15 12:11:20] 2026-01-15 03:11:20,251 [wrapper] Test setup, not cleaning
[2026-01-15 12:11:20] 2026-01-15 03:11:20,253 [wrapper] apfmon messages muted
[2026-01-15 12:11:20] 2026-01-15 03:11:20,255 [wrapper] ==== wrapper stdout END ====
[2026-01-15 12:11:20] 2026-01-15 03:11:20,256 [wrapper] ==== wrapper stderr END ====
[2026-01-15 12:11:20]  *** Error codes and diagnostics ***
[2026-01-15 12:11:20]     "exeErrorCode": 0,
[2026-01-15 12:11:20]     "exeErrorDiag": "",
[2026-01-15 12:11:20]     "pilotErrorCode": 0,
[2026-01-15 12:11:20]     "pilotErrorDiag": "",
[2026-01-15 12:11:20]  *** Listing of results directory ***
[2026-01-15 12:11:20] total 739312
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc    579449 Jan 15 02:34 pilot3.tar.gz
[2026-01-15 12:11:20] -rwx------. 1 boinc boinc     36322 Jan 15 02:37 runpilot2-wrapper.sh
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc      5112 Jan 15 02:40 queuedata.json
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc       100 Jan 15 10:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-15 12:11:20] -rwxr-xr-x. 1 boinc boinc      7986 Jan 15 10:55 run_atlas
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc       105 Jan 15 10:55 job.xml
[2026-01-15 12:11:20] -rw-r--r--. 2 boinc boinc 600569267 Jan 15 10:55 EVNT.32794306._001235.pool.root.1
[2026-01-15 12:11:20] -rw-r--r--. 2 boinc boinc     15847 Jan 15 10:55 start_atlas.sh
[2026-01-15 12:11:20] drwxrwx--x. 2 boinc boinc        68 Jan 15 10:55 shared
[2026-01-15 12:11:20] -rw-r--r--. 2 boinc boinc    592406 Jan 15 10:55 input.tar.gz
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc      9407 Jan 15 10:55 init_data.xml
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc         0 Jan 15 10:55 boinc_lockfile
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc      2508 Jan 15 10:55 pandaJob.out
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc    999480 Jan 15 10:55 agis_schedconf.cvmfs.json
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc   1516246 Jan 15 10:55 agis_ddmendpoints.agis.ALL.json
[2026-01-15 12:11:20] drwx------. 5 boinc boinc      4096 Jan 15 10:55 pilot3
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc 150773132 Jan 15 12:09 HITS.48215263._030865.pool.root.1
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc       530 Jan 15 12:09 boinc_task_state.xml
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc      1014 Jan 15 12:09 memory_monitor_summary.json
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc    249407 Jan 15 12:09 log.48215263._030865.job.log.tgz.1
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc      7767 Jan 15 12:10 heartbeat.json
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc        27 Jan 15 12:11 wrapper_checkpoint.txt
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc      8192 Jan 15 12:11 boinc_mmap_file
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc        95 Jan 15 12:11 pilot_heartbeat.json
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc       746 Jan 15 12:11 pilotlog.txt
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc    653707 Jan 15 12:11 log.48215263._030865.job.log.1
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc       357 Jan 15 12:11 output.list
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc       620 Jan 15 12:11 runtime_log
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc    921600 Jan 15 12:11 result.tar.gz
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc      8775 Jan 15 12:11 runtime_log.err
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc       642 Jan 15 12:11 RSrKDmfzJ08n9Rq4apOajLDm4fhM0noT9bVo0NGKDmG4lKDmRbzCum.diag
[2026-01-15 12:11:20] -rw-r--r--. 1 boinc boinc     22023 Jan 15 12:11 stderr.txt
[2026-01-15 12:11:20] HITS file was successfully produced:
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc 150773132 Jan 15 12:09 shared/HITS.pool.root.1
[2026-01-15 12:11:20]  *** Contents of shared directory: ***
[2026-01-15 12:11:20] total 735232
[2026-01-15 12:11:20] -rw-r--r--. 2 boinc boinc 600569267 Jan 15 10:55 ATLAS.root_0
[2026-01-15 12:11:20] -rw-r--r--. 2 boinc boinc     15847 Jan 15 10:55 start_atlas.sh
[2026-01-15 12:11:20] -rw-r--r--. 2 boinc boinc    592406 Jan 15 10:55 input.tar.gz
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc 150773132 Jan 15 12:09 HITS.pool.root.1
[2026-01-15 12:11:20] -rw-------. 1 boinc boinc    921600 Jan 15 12:11 result.tar.gz
12:11:22 (622172): run_atlas exited; CPU time 12183.465344
12:11:22 (622172): called boinc_finish(0)

</stderr_txt>
]]>

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