Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:04:33 (3081116): wrapper (7.7.26015): starting
22:04:33 (3081116): wrapper: running run_atlas (--nthreads 4)
[2026-01-14 22:04:33] Arguments: --nthreads 4
[2026-01-14 22:04:33] Threads: 4
[2026-01-14 22:04:33] Checking for CVMFS
[2026-01-14 22:04:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-14 22:04:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-14 22:04:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-14 22:04:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-14 22:04:34] 2.9.2.0 2429254 1486 93204 155144 0 57 21690969 36864001 0 130560 0 1706899 99.992 59363 15779 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-14 22:04:34] CVMFS is ok
[2026-01-14 22:04:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-14 22:04:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-14 22:04:34] Further information can be found at the LHC@home message board.
[2026-01-14 22:04:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-14 22:04:34] Checking for apptainer binary...
[2026-01-14 22:04:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-14 22:04:34] Running /usr/bin/apptainer --version
[2026-01-14 22:04:34] apptainer version 1.4.1-1.1
[2026-01-14 22:04:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-14 22:04:34] thA309
[2026-01-14 22:04:34] apptainer works
[2026-01-14 22:04:34] Set ATHENA_PROC_NUMBER=4
[2026-01-14 22:04:34] Set ATHENA_CORE_NUMBER=4
[2026-01-14 22:04:34] Starting ATLAS job with PandaID=6969526197
[2026-01-14 22:04:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-14 22:54:53]  *** The last 200 lines of the pilot log: ***
[2026-01-14 22:54:53] 2026-01-14 21:54:21,324 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-14 22:54:53] 2026-01-14 21:54:21,324 | INFO     | job 6969526197 has completed (purged errors)
[2026-01-14 22:54:53] 2026-01-14 21:54:21,324 | INFO     | overall cleanup function is called
[2026-01-14 22:54:53] 2026-01-14 21:54:22,328 | INFO     | --- collectZombieJob: --- 10, [3091483]
[2026-01-14 22:54:53] 2026-01-14 21:54:22,329 | INFO     | zombie collector waiting for pid 3091483
[2026-01-14 22:54:53] 2026-01-14 21:54:22,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-14 22:54:53] 2026-01-14 21:54:22,329 | INFO     | collected zombie processes
[2026-01-14 22:54:53] 2026-01-14 21:54:22,329 | INFO     | will attempt to kill all subprocesses of pid=3091483
[2026-01-14 22:54:53] 2026-01-14 21:54:22,380 | INFO     | process IDs to be killed: [3091483] (in reverse order)
[2026-01-14 22:54:53] 2026-01-14 21:54:22,417 | WARNING  | found no corresponding commands to process id(s)
[2026-01-14 22:54:53] 2026-01-14 21:54:22,417 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-14 22:54:53] 2026-01-14 21:54:22,419 | INFO     | did not find any defunct processes belonging to 3091483
[2026-01-14 22:54:53] 2026-01-14 21:54:22,421 | INFO     | did not find any defunct processes belonging to 3091483
[2026-01-14 22:54:53] 2026-01-14 21:54:22,421 | INFO     | ready for new job
[2026-01-14 22:54:53] 2026-01-14 21:54:22,421 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-14 22:54:53] 2026-01-14 21:54:22,421 | INFO     | ***************************************
[2026-01-14 22:54:53] 2026-01-14 21:54:22,422 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-14 22:54:53] 2026-01-14 21:54:22,422 | INFO     | ***************************************
[2026-01-14 22:54:53] 2026-01-14 21:54:22,422 | INFO     | 
[2026-01-14 22:54:53] 2026-01-14 21:54:22,422 | INFO     | architecture information:
[2026-01-14 22:54:53] 2026-01-14 21:54:22,422 | INFO     | executing command: cat /etc/os-release
[2026-01-14 22:54:53] 2026-01-14 21:54:22,438 | INFO     | cat /etc/os-release:
[2026-01-14 22:54:53] NAME="CentOS Linux"
[2026-01-14 22:54:53] VERSION="7 (Core)"
[2026-01-14 22:54:53] ID="centos"
[2026-01-14 22:54:53] ID_LIKE="rhel fedora"
[2026-01-14 22:54:53] VERSION_ID="7"
[2026-01-14 22:54:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-14 22:54:53] ANSI_COLOR="0;31"
[2026-01-14 22:54:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-14 22:54:53] HOME_URL="https://www.centos.org/"
[2026-01-14 22:54:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-14 22:54:53] 
[2026-01-14 22:54:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-14 22:54:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-14 22:54:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-14 22:54:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-14 22:54:53] 
[2026-01-14 22:54:53] 2026-01-14 21:54:22,438 | INFO     | ***************************************
[2026-01-14 22:54:53] 2026-01-14 21:54:22,941 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-14 22:54:53] 2026-01-14 21:54:22,960 | INFO     | sufficient remaining disk space (237261291520 B)
[2026-01-14 22:54:53] 2026-01-14 21:54:22,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-14 22:54:53] 2026-01-14 21:54:22,960 | INFO     | current server update state: UPDATING_FINAL
[2026-01-14 22:54:53] 2026-01-14 21:54:22,960 | INFO     | update_server=False
[2026-01-14 22:54:53] 2026-01-14 21:54:22,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-14 22:54:53] 2026-01-14 21:54:22,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-14 22:54:53] 2026-01-14 21:54:22,961 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-14 22:54:53] 2026-01-14 21:54:22,982 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-14 22:54:53] 2026-01-14 21:54:22,983 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-14 22:54:53] 2026-01-14 21:54:22,983 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-14 22:54:53] 2026-01-14 21:54:22,983 | INFO     | will abort loop
[2026-01-14 22:54:53] 2026-01-14 21:54:23,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-14 22:54:53] 2026-01-14 21:54:23,421 | INFO     | all data control threads have been joined
[2026-01-14 22:54:53] 2026-01-14 21:54:23,966 | INFO     | [job] retrieve thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:23,966 | INFO     | [job] queue monitor thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:23,988 | INFO     | [job] job monitor thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:24,013 | INFO     | all payload control threads have been joined
[2026-01-14 22:54:53] 2026-01-14 21:54:24,427 | INFO     | [data] control thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:24,582 | INFO     | [job] validate thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:24,599 | INFO     | all job control threads have been joined
[2026-01-14 22:54:53] 2026-01-14 21:54:24,656 | INFO     | [payload] execute_payloads thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:24,706 | INFO     | [payload] failed_post thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:24,753 | INFO     | [job] create_data_payload thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:24,810 | INFO     | [payload] validate_pre thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:25,018 | INFO     | [payload] control thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:25,081 | INFO     | [data] copytool_out thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:25,297 | INFO     | [payload] validate_post thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:25,395 | INFO     | [data] copytool_in thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:25,604 | INFO     | [job] control thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:26,968 | INFO     | [data] queue_monitor thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:33,134 | INFO     | job.realtimelogging is not enabled
[2026-01-14 22:54:53] 2026-01-14 21:54:34,140 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-14 22:54:53] 2026-01-14 21:54:45,564 | INFO     | [monitor] cgroup control has ended
[2026-01-14 22:54:53] 2026-01-14 21:54:45,809 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140333580998464)>', '<ExcThread(monitor, started 140332276639488)>']
[2026-01-14 22:54:53] 2026-01-14 21:54:50,835 | INFO     | all workflow threads have been joined
[2026-01-14 22:54:53] 2026-01-14 21:54:50,835 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-14 22:54:53] 2026-01-14 21:54:50,836 | INFO     | traces error code: 0
[2026-01-14 22:54:53] 2026-01-14 21:54:50,836 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-14 22:54:53] 2026-01-14 21:54:53,004 | INFO     | PID=3084907 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-14 22:54:53] 2026-01-14 21:54:53,005 | INFO     | found 0 job(s) in 20 queues
[2026-01-14 22:54:53] 2026-01-14 21:54:53,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-14 22:54:53] 2026-01-14 21:54:53,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-14 22:54:53] 2026-01-14 21:54:53,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-14 22:54:53] 2026-01-14 21:54:53,005 | INFO     | [monitor] control thread has ended
[2026-01-14 22:54:53] 2026-01-14 21:54:53,085 [wrapper] ==== pilot stdout END ====
[2026-01-14 22:54:53] 2026-01-14 21:54:53,089 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-14 22:54:53] 2026-01-14 21:54:53,093 [wrapper] pilotpid: 3084907
[2026-01-14 22:54:53] 2026-01-14 21:54:53,097 [wrapper] Pilot exit status: 0
[2026-01-14 22:54:53] 2026-01-14 21:54:53,110 [wrapper] pandaids: 6969526197
[2026-01-14 22:54:53] 2026-01-14 21:54:53,134 [wrapper] cleanup supervisor_pilot 3101204 3084908
[2026-01-14 22:54:53] 2026-01-14 21:54:53,137 [wrapper] Test setup, not cleaning
[2026-01-14 22:54:53] 2026-01-14 21:54:53,141 [wrapper] apfmon messages muted
[2026-01-14 22:54:53] 2026-01-14 21:54:53,145 [wrapper] ==== wrapper stdout END ====
[2026-01-14 22:54:53] 2026-01-14 21:54:53,149 [wrapper] ==== wrapper stderr END ====
[2026-01-14 22:54:53]  *** Error codes and diagnostics ***
[2026-01-14 22:54:53]     "exeErrorCode": 0,
[2026-01-14 22:54:53]     "exeErrorDiag": "",
[2026-01-14 22:54:53]     "pilotErrorCode": 0,
[2026-01-14 22:54:53]     "pilotErrorDiag": "",
[2026-01-14 22:54:53]  *** Listing of results directory ***
[2026-01-14 22:54:53] total 738432
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc    579449 Jan 14 18:34 pilot3.tar.gz
[2026-01-14 22:54:53] -rwx------ 1 boinc boinc     36322 Jan 14 18:37 runpilot2-wrapper.sh
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc      5112 Jan 14 18:40 queuedata.json
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc       100 Jan 14 22:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-14 22:54:53] -rwxr-xr-x 1 boinc boinc      7986 Jan 14 22:04 run_atlas
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc       105 Jan 14 22:04 job.xml
[2026-01-14 22:54:53] -rw-r--r-- 2 boinc boinc 596772120 Jan 14 22:04 EVNT.32794306._001170.pool.root.1
[2026-01-14 22:54:53] -rw-r--r-- 2 boinc boinc    592404 Jan 14 22:04 input.tar.gz
[2026-01-14 22:54:53] -rw-r--r-- 2 boinc boinc     15847 Jan 14 22:04 start_atlas.sh
[2026-01-14 22:54:53] drwxrwx--x 2 boinc boinc      4096 Jan 14 22:04 shared
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc         0 Jan 14 22:04 boinc_setup_complete
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc      6377 Jan 14 22:04 init_data.xml
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc         0 Jan 14 22:04 boinc_lockfile
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc      2509 Jan 14 22:04 pandaJob.out
[2026-01-14 22:54:53] -rw------- 1 boinc boinc    999596 Jan 14 22:04 agis_schedconf.cvmfs.json
[2026-01-14 22:54:53] -rw------- 1 boinc boinc   1516246 Jan 14 22:04 agis_ddmendpoints.agis.ALL.json
[2026-01-14 22:54:53] drwx------ 5 boinc boinc      4096 Jan 14 22:04 pilot3
[2026-01-14 22:54:53] -rw------- 1 boinc boinc 154061782 Jan 14 22:53 HITS.48215263._029233.pool.root.1
[2026-01-14 22:54:53] -rw------- 1 boinc boinc        95 Jan 14 22:53 pilot_heartbeat.json
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc       530 Jan 14 22:54 boinc_task_state.xml
[2026-01-14 22:54:53] -rw------- 1 boinc boinc      1023 Jan 14 22:54 memory_monitor_summary.json
[2026-01-14 22:54:53] -rw------- 1 boinc boinc    245438 Jan 14 22:54 log.48215263._029233.job.log.tgz.1
[2026-01-14 22:54:53] -rw------- 1 boinc boinc      7760 Jan 14 22:54 heartbeat.json
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc        27 Jan 14 22:54 wrapper_checkpoint.txt
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc      8192 Jan 14 22:54 boinc_mmap_file
[2026-01-14 22:54:53] -rw------- 1 boinc boinc       747 Jan 14 22:54 pilotlog.txt
[2026-01-14 22:54:53] -rw------- 1 boinc boinc    458393 Jan 14 22:54 log.48215263._029233.job.log.1
[2026-01-14 22:54:53] -rw------- 1 boinc boinc       357 Jan 14 22:54 output.list
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc       620 Jan 14 22:54 runtime_log
[2026-01-14 22:54:53] -rw------- 1 boinc boinc    727040 Jan 14 22:54 result.tar.gz
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc      8897 Jan 14 22:54 runtime_log.err
[2026-01-14 22:54:53] -rw------- 1 boinc boinc       657 Jan 14 22:54 E5eMDm5yJ08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmF7rKDmwKL1om.diag
[2026-01-14 22:54:53] -rw-r--r-- 1 boinc boinc     11232 Jan 14 22:54 stderr.txt
[2026-01-14 22:54:53] HITS file was successfully produced:
[2026-01-14 22:54:53] -rw------- 1 boinc boinc 154061782 Jan 14 22:53 shared/HITS.pool.root.1
[2026-01-14 22:54:53]  *** Contents of shared directory: ***
[2026-01-14 22:54:53] total 734556
[2026-01-14 22:54:53] -rw-r--r-- 2 boinc boinc 596772120 Jan 14 22:04 ATLAS.root_0
[2026-01-14 22:54:53] -rw-r--r-- 2 boinc boinc    592404 Jan 14 22:04 input.tar.gz
[2026-01-14 22:54:53] -rw-r--r-- 2 boinc boinc     15847 Jan 14 22:04 start_atlas.sh
[2026-01-14 22:54:53] -rw------- 1 boinc boinc 154061782 Jan 14 22:53 HITS.pool.root.1
[2026-01-14 22:54:53] -rw------- 1 boinc boinc    727040 Jan 14 22:54 result.tar.gz
22:54:54 (3081116): run_atlas exited; CPU time 10927.890323
22:54:54 (3081116): called boinc_finish(0)

</stderr_txt>
]]>

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